LOCUS       NZ_CP079130             1449 bp    DNA     circular CON 10-JAN-2024
DEFINITION  Klebsiella pneumoniae subsp. pneumoniae strain WRC03_AI1235PC
            plasmid pAI1235P_P10, complete sequence.
ACCESSION   NZ_CP079130
VERSION     NZ_CP079130.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN20115067
            Assembly: GCF_019286455.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae subsp. pneumoniae
  ORGANISM  Klebsiella pneumoniae subsp. pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 1449)
  AUTHORS   Balaji,V., Snehal,P., Yamuna,B.D. and Monisha,P.
  TITLE     Complete genome of Carbapenem resistant Klebsiella
            pneumoniae_WRC03_AI1235PC
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1449)
  AUTHORS   Balaji,V., Snehal,P., Yamuna,B.D. and Monisha,P.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2021) Clinical Microbiology, Christian Medical
            College, Ida Scudder Road, Vellore, Tamil Nadu 632004, India
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2021
            Assembly Method :: UNICYCLER v. V.0.4.8; CANU v. V.2.1.1
            Assembly Name                     :: WRC03_AI1235PC
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 91.0x
            Sequencing Technology :: Illumina MiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/10/2024 03:15:14
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,786
            CDSs (total)                      :: 5,662
            Genes (coding)                    :: 5,489
            CDSs (with protein)               :: 5,489
            Genes (RNA)                       :: 124
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 88
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 173
            CDSs (without protein)            :: 173
            Pseudo Genes (ambiguous residues) :: 0 of 173
            Pseudo Genes (frameshifted)       :: 74 of 173
            Pseudo Genes (incomplete)         :: 99 of 173
            Pseudo Genes (internal stop)      :: 26 of 173
            Pseudo Genes (multiple problems)  :: 24 of 173
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP079130.1.
            Bacteria and source DNA available from Christian medical college.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1449
                     /organism="Klebsiella pneumoniae subsp. pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="WRC03_AI1235PC"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /sub_species="pneumoniae"
                     /db_xref="taxon:72407"
                     /plasmid="pAI1235P_P10"
                     /geo_loc_name="India"
                     /lat_lon="12.9165 N 79.1325 E"
                     /collection_date="2014"
                     /collected_by="Christian medical college"
     gene            187..1449
                     /locus_tag="KWV87_RS28735"
                     /old_locus_tag="KWV87_28735"
     CDS             187..1449
                     /locus_tag="KWV87_RS28735"
                     /old_locus_tag="KWV87_28735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_031587700.1"
                     /GO_function="GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /GO_process="GO:0006313 - DNA transposition [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS1380-like element ISEcp1 family transposase"
                     /protein_id="WP_000608644.1"
                     /translation="MINKIDFKAKNLTSNAGLFLLLENAKSNGIFDFIENDLVFDNDST
                     NKIKMNHIKTMLCGHFIGIDKLERLKLLQNDPLVNEFDISVKEPETVSRFLGNFNFKTT
                     QMFRDINFKVFKKLLTKSKLTSITIDIDSSVINVEGHQEGASKGYNPKKLGNRCYNIQF
                     AFCDELKAYVTGFVRSGNTYTANGAAEMIKEIVANIKSDDLEILFRMDSGYFDEKIIET
                     IESLGCKYLIKAKSYSTLTSQATNSSIVFVKGEEGRETTELYTKLVKWEKDRRFVVSRV
                     LKPEKERAQLSLLEGSEYDYFFFVTNTTLLSEKVVIYYEKRGNAENYIKEAKYDMAVGH
                     LLLKSFWANEAVFQMMMLSYNLFLLFKFDSLDSSEYRQQIKTFRLKYVFLAAKIIKTAR
                     YVIMKLSENYPYKGVYEKCLV"
                     /name="IS1380-like element ISEcp1 family transposase"
ORIGIN
        1 cctagattct acgtcagtac ttcaaaaagc ataatcaaag ccttgataaa tatgcattcc
       61 ttcgaaattc agctttcacc cattgggtga aagaaaagtg ctcaaaaata tgttaaatta
      121 tcagctttta tgactcgata tatggtaaaa taatagtaag aaaagtagta aaaaggggtt
      181 ctaattatga ttaataaaat tgatttcaaa gctaagaatc taacatcaaa tgcaggtctt
      241 tttctgctcc ttgagaatgc aaaaagcaat gggatttttg attttattga aaatgacctc
      301 gtatttgata atgactcaac aaataaaatc aagatgaatc atataaagac catgctctgc
      361 ggtcacttca ttggcattga taagttagaa cgtctaaagc tacttcaaaa tgatcccctc
      421 gtcaacgagt ttgatatttc cgtaaaagaa cctgaaacag tgtcacggtt tctaggaaac
      481 ttcaacttca agacaaccca aatgtttaga gacattaatt ttaaagtctt taaaaaactg
      541 ctcactaaaa gtaaattgac atccattacg attgatattg atagtagtgt aattaacgta
      601 gaaggtcatc aagaaggtgc gtcaaaagga tataatccta agaaactggg aaaccgatgc
      661 tacaatatcc aatttgcatt ttgcgacgaa ttaaaagcat atgttaccgg atttgtaaga
      721 agtggcaata cttacactgc aaacggtgct gcggaaatga tcaaagaaat tgttgctaac
      781 atcaaatcag acgatttaga aattttattt cgaatggata gtggctactt tgatgaaaaa
      841 attatcgaaa cgatagaatc tcttggatgc aaatatttaa ttaaagccaa aagttattct
      901 acactcacct cacaagcaac gaattcatca attgtattcg ttaaaggaga agaaggtaga
      961 gaaactacag aactgtatac aaaattagtt aaatgggaaa aagacagaag atttgtcgta
     1021 tctcgcgtac tgaaaccaga aaaagaaaga gcacaattat cacttttaga aggttccgaa
     1081 tacgactact ttttctttgt aacaaatact accttgcttt ctgaaaaagt agttatatac
     1141 tatgaaaagc gtggtaatgc tgaaaactat atcaaagaag ccaaatacga catggcggtg
     1201 ggtcatctct tgctaaagtc attttgggcg aatgaagccg tgtttcaaat gatgatgctt
     1261 tcatataacc tatttttgtt gttcaagttt gattccttgg actcttcaga atacagacag
     1321 caaataaaga cctttcgttt gaagtatgta tttcttgcag caaaaataat caaaaccgca
     1381 agatatgtaa tcatgaagtt gtcggaaaac tatccgtaca agggagtgta tgaaaaatgt
     1441 ctggtataa
//
