LOCUS       NZ_CP079129             3692 bp    DNA     circular CON 10-JAN-2024
DEFINITION  Klebsiella pneumoniae subsp. pneumoniae strain WRC03_AI1235PC
            plasmid pAI1235P_P9, complete sequence.
ACCESSION   NZ_CP079129
VERSION     NZ_CP079129.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN20115067
            Assembly: GCF_019286455.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae subsp. pneumoniae
  ORGANISM  Klebsiella pneumoniae subsp. pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 3692)
  AUTHORS   Balaji,V., Snehal,P., Yamuna,B.D. and Monisha,P.
  TITLE     Complete genome of Carbapenem resistant Klebsiella
            pneumoniae_WRC03_AI1235PC
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3692)
  AUTHORS   Balaji,V., Snehal,P., Yamuna,B.D. and Monisha,P.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2021) Clinical Microbiology, Christian Medical
            College, Ida Scudder Road, Vellore, Tamil Nadu 632004, India
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2021
            Assembly Method :: UNICYCLER v. V.0.4.8; CANU v. V.2.1.1
            Assembly Name                     :: WRC03_AI1235PC
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 91.0x
            Sequencing Technology :: Illumina MiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/10/2024 03:15:14
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,786
            CDSs (total)                      :: 5,662
            Genes (coding)                    :: 5,489
            CDSs (with protein)               :: 5,489
            Genes (RNA)                       :: 124
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 88
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 173
            CDSs (without protein)            :: 173
            Pseudo Genes (ambiguous residues) :: 0 of 173
            Pseudo Genes (frameshifted)       :: 74 of 173
            Pseudo Genes (incomplete)         :: 99 of 173
            Pseudo Genes (internal stop)      :: 26 of 173
            Pseudo Genes (multiple problems)  :: 24 of 173
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP079129.1.
            Bacteria and source DNA available from Christian medical college.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3692
                     /organism="Klebsiella pneumoniae subsp. pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="WRC03_AI1235PC"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /sub_species="pneumoniae"
                     /db_xref="taxon:72407"
                     /plasmid="pAI1235P_P9"
                     /geo_loc_name="India"
                     /lat_lon="12.9165 N 79.1325 E"
                     /collection_date="2014"
                     /collected_by="Christian medical college"
     gene            complement(60..326)
                     /locus_tag="KWV87_RS28705"
                     /old_locus_tag="KWV87_28705"
     CDS             complement(60..326)
                     /locus_tag="KWV87_RS28705"
                     /old_locus_tag="KWV87_28705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000262326.1"
                     /GO_function="GO:0008657 - DNA topoisomerase type II
                     (double strand cut, ATP-hydrolyzing) inhibitor activity
                     [Evidence IEA]; GO:0042803 - protein homodimerization
                     activity [Evidence IEA]"
                     /GO_process="GO:0030541 - plasmid partitioning [Evidence
                     IEA]; GO:0051290 - protein heterotetramerization [Evidence
                     IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="WP_000262326.1"
                     /translation="MVWTINYSDRALKSLRKMDKQNARRIVDFMDLRIAVAADPRQSGK
                     PLKGELGEFWRYRVGDYRILCEIRDDELVILAATIGHRREVYD"
                     /name="type II toxin-antitoxin system RelE/ParE family
                     toxin"
     gene            complement(310..534)
                     /locus_tag="KWV87_RS28710"
                     /old_locus_tag="KWV87_28710"
     CDS             complement(310..534)
                     /locus_tag="KWV87_RS28710"
                     /old_locus_tag="KWV87_28710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000879771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6290 family protein"
                     /protein_id="WP_000879771.1"
                     /translation="MLAIRLSDEIESRLDSLAKQTGRTKTFYAREAILAHLEDLEDYYL
                     SAETAARVRRGDEAVHSSEDVRKSLGLDD"
                     /name="DUF6290 family protein"
     gene            1080..1268
                     /locus_tag="KWV87_RS28715"
                     /old_locus_tag="KWV87_28715"
     CDS             1080..1268
                     /locus_tag="KWV87_RS28715"
                     /old_locus_tag="KWV87_28715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_000165998.1"
                     /translation="MTKQESAALNMAKFIRAQSLLLLEKLDVLDLDDEAADCERMHEQA
                     EALYQKLSARFGIQDGE"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            complement(1316..1543)
                     /locus_tag="KWV87_RS28720"
                     /old_locus_tag="KWV87_28720"
     CDS             complement(1316..1543)
                     /locus_tag="KWV87_RS28720"
                     /old_locus_tag="KWV87_28720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001046776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_224019247.1"
                     /translation="MFGFSPGELMNLCPDERLLFVRMISAMLRRSGGDAGAVMFEAYRH
                     IVSDTNQARRSYMLDLLESVRHDYVHGGYT"
                     /name="hypothetical protein"
     gene            2688..3119
                     /locus_tag="KWV87_RS28725"
                     /old_locus_tag="KWV87_28725"
     CDS             2688..3119
                     /locus_tag="KWV87_RS28725"
                     /old_locus_tag="KWV87_28725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003511628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6530 family protein"
                     /protein_id="WP_053274236.1"
                     /translation="MNIPTHLKHKPIIAVENYDRIDGPYADDTDAMGLSVGIAQWNTPG
                     YTELSAKVWRNTGEKWSRQSEELPLHRVIDLATLICIAMDYSKHGRLSSSDDFPVSRSG
                     GNPELSRHIDLMKNELKENHEYLDESLKRLAAELKRLGY"
                     /name="DUF6530 family protein"
     gene            3211..3690
                     /locus_tag="KWV87_RS28730"
                     /old_locus_tag="KWV87_28730"
     CDS             3211..3690
                     /locus_tag="KWV87_RS28730"
                     /old_locus_tag="KWV87_28730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017896843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_227525340.1"
                     /translation="MRKTLLLCVPLFLLAGCAQQKQQMPDANYEKFAKVEVASDACLKS
                     NFITAQEAGQAHSNISLFLSSWAYDYVRYSNLLAQGHEEVKKIKITQEGCNLLRAKIYQ
                     DNIEAQRYQKQMEMAAQQKALADQQALQSIQNMQNTLPKTTYCNQIGTQTICNSY"
                     /name="hypothetical protein"
     Typing          1883..2402
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="84.686"
                     /coverage="89.0"
                     /evalue="4.31e-144"
ORIGIN
        1 ataaattgat ttaccataac atccgttgtc aacatcaaaa aaagcccgca tagcgggctt
       61 cagtcgtaaa cttcgcggcg atggccaatg gtggcggcaa ggataaccag ctcgtcatcc
      121 cggatctcac acagaatgcg ataatctccc acccgatagc gccagaactc gcccagctca
      181 cctttgagcg gcttccctga ctggcgagga tcggcagcaa ctgcaatgcg taaatccata
      241 aaatccacaa tccgtcgtgc gttctgtttg tccatcttgc gtaacgattt gagcgcccgg
      301 tcggaatagt taatcgtcca gaccaagtga cttcctcacg tcttcagacg aatgcacggc
      361 ttcatcacca cggcgaacgc gtgcggcagt ttctgctgaa agataataat cttccaggtc
      421 ttccagatgc gccagtattg cttcccgcgc atagaacgtc tttgttctgc cggtttgctt
      481 cgccagcgag tccagacggg actcaatctc atcagataac cggatagcaa gcatataaac
      541 ctcctgaaca ccatttgata tacatgtata gcaatagtat cgcaatcaac ctaaaagaac
      601 aaaaaataat cttgctggcc cctcttgata atccgtaacg ctgtcaatat atccagcttg
      661 agggctttcc tcttaactat tgaaaggata acgattatgg gtcttaagcc gggtccgaaa
      721 cgaattgccg attcaacagg ggaacctgat aaacgccagc gtgacaataa aaaaacgccg
      781 gggaatactg acaaattgaa acccagcaaa tcctcaaaaa aataagtcag tagttaaaag
      841 ccctccgggg ctttttttgt acccgcagat cagtctgatt gaacataaca tctgttgccc
      901 gcaccacctc aggcgccctc agggcgtttc tgaggactcc ggcctgaaac atacaccttt
      961 ctgtgcccat atcgagaaaa aacgcccctg atgatttctg cgtacctgca tggctatgca
     1021 ctcaagtgaa tgaagtaaga tttcagtctg cgatcaccat aaaaccggga aaaagccgta
     1081 tgacaaaaca ggaatcagcc gcactgaaca tggcaaaatt tatccgggcg cagtcgctgc
     1141 tgctgctcga aaaactcgac gtgctcgatc ttgatgacga ggcagccgac tgtgagcgaa
     1201 tgcacgaaca ggcagaagcg ctttatcaga agctgagcgc acgcttcggt atacaggacg
     1261 gcgaataaag agacgaaaat aacgctcact tagacgaaaa gcgtatccat ggcaactatg
     1321 tatatccacc gtgtacatag tcatgcctga cgctttcgag caggtcgagc atgtaggaac
     1381 gacgagcttg attggtatcg gacacaatat ggcgatacgc ctcaaacata acagcacccg
     1441 catcaccgcc cgaacggcga agcatagcgg aaatcatccg cacaaagagc agacgttcat
     1501 cggggcaaag gttcataagt tctcctggtg aaaaaccaaa catgaagcac ccatctatta
     1561 acgtcagctg tgaacgcttc attagaagaa aataggtaaa cccgggaaaa agatccaaac
     1621 gttaacatca caggtaaaca gaaacgtcgg gtcgatcggg aaattctttc ccggacggcg
     1681 cggggttggg caagccgcag gcgcgtcagt gcttttagcg ggtgtcaggg cacagccccg
     1741 acaccccaga gccgactgta ggtcactggg cgaacgcggc ggaatgatgt cggatgacgt
     1801 cattttgcgg cgtctgccct atcctgcatc gtattaaaaa atgcagctat ggcgcgtacg
     1861 gtgccaaaga taagcccgga gatattccgc ttcctcgctc actgactcgc tccgctcggt
     1921 cgttcggctg cggcgagcgg taccggctta ctggcggggc ggaaatttcc tggcatcttc
     1981 caggaagaag cttaacaggg aagcaagaag gccacggcga agccgttttt ccataggctc
     2041 cgcccccctg acaagcatca cgaaatctga cgctcaaatc agtggtggcg aaacccgaca
     2101 ggactataaa gataccaggc gtttccacct gatggctccc tcttgcgctc tcctgttccc
     2161 gtcatgcggc gtccgtgttg tggtggaagc tttacctaaa tcaccacgcc ccgttccgtt
     2221 tagacagttc gctccaagct gggctgtatg caagaacccc ccgttcagcc cgactaccac
     2281 gtcgtcccgg taactatcac ttgagtccaa cccggaacag acacgaaaaa tcgccagtgg
     2341 cggtagccat tggtaactga gatgtgcgag agatttatct ggagttcttg aagtgggagc
     2401 ctgagtccgg ctacactgga aggacagttt aggtgactcg tctcgcacaa gacagttacc
     2461 tggttaagca gttccccaac tgacctaacc ttcgaaaaac cacctcccca ggtggttttt
     2521 tcgttttcag agcaagagat tacgctcagc cataaatgat ctcaagaaga tccactccaa
     2581 caaattcaaa tccaacaatt cataaaatgt tacatttact aattagtaaa tttatttgtt
     2641 ttcttgttta ctgattaaga agccaaattc acactgcaga gaatgatatg aacatcccta
     2701 ctcatctgaa acacaaaccg attatcgctg tagaaaacta tgatcgaatt gatggcccct
     2761 atgctgatga cactgatgct atggggcttt ccgttggaat tgctcaatgg aacacccccg
     2821 gatataccga gctatcagca aaagtctggc gcaacaccgg agaaaagtgg tcacggcaat
     2881 ctgaagagtt acctcttcac cgtgtcatcg acttagcaac gcttatctgc atagcgatgg
     2941 attacagcaa acatggtcgc ttatcttcca gcgacgactt tccggtcagt cgttcaggag
     3001 gtaatcctga gttatctcgt catattgatt tgatgaaaaa cgaattaaaa gagaatcacg
     3061 agtatttaga tgaaagtctt aagcgtttag cagcagaact aaaacgttta ggttattaag
     3121 tagacgaagg tcgctacgct cccccgtgat tttttatata cccaccacgg ggcattaggt
     3181 ttttcttgtc aaaaaaggat aaaacactaa atgagaaaaa cgttattact ttgcgttccg
     3241 ttgtttttac ttgctggttg cgcccaacaa aaacaacaaa tgccagatgc taattacgaa
     3301 aagttcgcaa aggtcgaggt tgcctctgat gcctgcttaa aatccaactt cattacagca
     3361 caggaagcag gtcaggcaca ttccaacata tccttatttt taagttcatg ggcgtatgac
     3421 tacgttcgtt actcaaacct cttggcgcaa ggacatgaag aagtaaaaaa aatcaagata
     3481 acacaggaag gctgcaacct tttgcgcgca aaaatctatc aagacaacat cgaggcacag
     3541 agatatcaaa aacagatgga gatggctgca caacaaaaag ccttagcaga tcagcaggcg
     3601 ttacaatcaa ttcaaaatat gcaaaacacc ttacctaaaa caacttactg taaccagatt
     3661 ggcacacaga caatctgtaa cagctactga tc
//
