LOCUS       NZ_CP077962             2271 bp    DNA     circular CON 20-AUG-2023
DEFINITION  Mammaliicoccus sciuri strain WHA07 plasmid unnamed2, complete
            sequence.
ACCESSION   NZ_CP077962
VERSION     NZ_CP077962.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN19844626
            Assembly: GCF_019272915.1
KEYWORDS    RefSeq.
SOURCE      Mammaliicoccus sciuri
  ORGANISM  Mammaliicoccus sciuri
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Mammaliicoccus.
REFERENCE   1  (bases 1 to 2271)
  AUTHORS   TengFei,Z. and YiLuo,C.
  TITLE     Comparision of the genomes of a MRSA and a MSSA strains isolated
            from a chicken farm reveals an insertion of SCCmec type XII element
            in MRSA ST9
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2271)
  AUTHORS   TengFei,Z. and YiLuo,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-JUN-2021) Institute of Animal Husbandry and
            Veterinary, Hubei Academy of Agricultural Sciences, Nanhu RD, Wuhan,
            Hubei 430064, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: SOAPdenovo v. MAY-2020
            Genome Representation             :: Full
            Expected Final Version            :: No
            Genome Coverage                   :: 100.0x
            Sequencing Technology             :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 08/20/2023 04:08:46
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,174
            CDSs (total)                      :: 3,093
            Genes (coding)                    :: 3,045
            CDSs (with protein)               :: 3,045
            Genes (RNA)                       :: 81
            rRNAs                             :: 7, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 58
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 10 of 48
            Pseudo Genes (incomplete)         :: 35 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 4 of 48
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP077962.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2271
                     /organism="Mammaliicoccus sciuri"
                     /mol_type="genomic DNA"
                     /strain="WHA07"
                     /isolation_source="bioaerosol of a chicken farm"
                     /db_xref="taxon:1296"
                     /plasmid="unnamed2"
                     /geo_loc_name="China: WuHan"
                     /collection_date="2018-07"
     gene            join(1559..2271,1..292)
                     /locus_tag="KTR69_RS15790"
     CDS             join(1559..2271,1..292)
                     /locus_tag="KTR69_RS15790"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_032489338.1"
                     /translation="MQYNTTRYVDENQDNETLKDMTKSGKQRPWREKKVDNVSYADILE
                     ILKIKKAFNVKQCGNVLEFKPTDEGYLKLHKTWFCKSKLCPVCNWRRAMKNSYQAQKVI
                     EEVVKEKPKARWLFLTLSARNAIDGEHLEQSLKHMSKAFNKLKMYTKVKKNLIGFLRST
                     EVTVNKNDGSYNQHMHVLLCVENSYFKNKVNYITQEEWVTLWQKALQVNYRPVANIKAI
                     KPNQKGDKDIQAAIKETSKYSVKSSDFLTDDDERNQEIVNDLEKGLYRKRMLSYGGLLK
                     QKHKILNLDDAEDGNLINTSDEDKTTDEEEKAHSITAIWNFEKQNYYLKDLKR"
                     /name="protein rep"
     gene            complement(960..1283)
                     /gene="qacG"
                     /locus_tag="KTR69_RS15795"
     ARG             complement(964..1283)
                     /name="qacG"
                     /gene="qacG"
                     /gene_name="quaternary ammonium compound efflux SMR
                     transporter QacG"
                     /tool="amrfinderplus"
                     /drug_class="QUATERNARY AMMONIUM"
                     /identity="100.0"
                     /coverage="100.0"
     Typing          105..292
                     /name="rep_cluster_1017"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="96.296"
                     /coverage="100.0"
                     /evalue="2.18e-82"
     Typing          1560..2271
                     /name="rep_cluster_1017"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="99.018"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 aacctctaaa tattcggtta agtcatctga ttttttaact gatgatgacg aaagaaatca
       61 agaaatcgtg aacgatttag aaaaaggttt ataccgaaaa cgtatgttga gttatggtgg
      121 attgcttaaa caaaaacata aaattttaaa tttagacgat gccgaagatg gcaatttaat
      181 taatacaagt gacgaagata aaacaacaga cgaagaagaa aaggcgcatt caattactgc
      241 gatttggaat tttgaaaaac aaaattatta cttaaaagat ttgaaacgtt agcttaaaag
      301 ctagcgtttt tttatgtgtt tttgcccctg cgggaactat agcgttcaac cggcatggtt
      361 gcccagtttt tatcgcgaaa aataattttg tgcgtaactg ggcagtgtct aaattttttt
      421 gccattacat gctaaatttt aatttgcatg taaatgggca gtgtttaaaa aattcgacac
      481 tggttttgct caaatttttg tttgtggaat tagaatatat ttatttggct catatttgcg
      541 ttttaaaagc ttgtttaggt ttttaggtat aaaactatat gatttaccct taaatcttta
      601 aaatgccccc ttagaattca aaataaaggt atttaaaatt tggtatcttt gaaaatttaa
      661 aaataaaaaa tgctaagtgc aacaataaaa aagttgtact tagcaataac acaaataata
      721 gaaaagctaa ttaatttaat ttttgagtac tatatttttc ctactcaatt tgcttaatta
      781 taacataatt aaagcacgca tttatgccga gaaaatttat tgatgttgag aagaaccctt
      841 aactaaactt gcagacgaat gtcggcatag cgtgagctat taagccgacc attcgacaag
      901 ttttgggatt gttaagggtt ccgaggctca acgtcaataa agcaattgga ataaaataat
      961 caatggcttt ctccaaatac atttaagagc actacaccta taacaattaa gccaatagaa
     1021 attatactaa ttaaattaac attttcttta aaaacgataa ctgagattat tgttgttaat
     1081 actaatccta gacctgccca tgttgcgtaa gttatattta agggcaaaaa ttttattgtt
     1141 aaacttaaaa aataaaagca aattccaaac gaaagtagtg tacctaatgt tggccataac
     1201 tttgtgaaac cttctgatgt ttttaaaaaa ctagttccga ttatttctgt tgcaattgag
     1261 ataaataaat ataaataatg cattaagctt ctcctttaat ttctatttga tagcttatat
     1321 tttaatttat attaagtgaa agaaaaagtt ttaagatttg tattttaaaa cgagttgaaa
     1381 acgagtttct tcttgtcttg atactatata gaaataactc aaagatataa aaagtcattt
     1441 gaatgttgat ataacagtat ttttggttgt ttttgttgtt gaaagaaaat ttgacatgaa
     1501 aaaaccccag ttatatgatt aaggtgtcga atcaaaatca aaactggggg ctttttatat
     1561 gcaatataat actactagat atgtagacga aaatcaagat aatgaaacat taaaagatat
     1621 gacgaaaagt gggaaacaac gcccatggag agagaagaaa gttgataatg taagttatgc
     1681 agatatacta gaaattttaa aaataaaaaa ggcttttaac gtaaaacaat gtggtaacgt
     1741 cttagagttc aagccaactg atgaaggtta tttgaaatta cataaaacat ggttttgtaa
     1801 atcaaaatta tgcccagttt gtaattggag gcgtgctatg aaaaatagtt atcaagctca
     1861 aaaagtgatt gaagaagtgg ttaaagaaaa gccaaaagca cgttggttat ttcttacgct
     1921 atcagcacga aatgcaatag acggtgaaca tttagaacaa agtttaaagc atatgtctaa
     1981 ggcttttaat aaattaaaaa tgtatacaaa agttaaaaag aatttaatcg gatttttacg
     2041 ttcaaccgaa gtaacggtta ataaaaatga cggtagttat aatcaacata tgcacgtttt
     2101 attgtgtgtt gaaaatagct attttaagaa taaagttaat tatataactc aagaagaatg
     2161 ggttacttta tggcaaaaag cattacaagt aaattatcga ccagtagcaa atattaaagc
     2221 gatcaaacca aatcaaaaag gagataaaga tattcaagca gctatcaaag a
//
