LOCUS       NZ_CP077682             3877 bp    DNA     circular CON 22-JUL-2023
DEFINITION  Salmonella enterica subsp. enterica serovar Kentucky strain
            YZ20MCS16 plasmid unnamed2, complete sequence.
ACCESSION   NZ_CP077682
VERSION     NZ_CP077682.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN19842584
            Assembly: GCF_019063905.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Kentucky
  ORGANISM  Salmonella enterica subsp. enterica serovar Kentucky
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3877)
  AUTHORS   Mei,C.
  TITLE     Whole genome of Salmonella enterica serovar Kentucky YZ20MCS16
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3877)
  AUTHORS   Mei,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-JUN-2021) Key Laboratory of Prevention and Control of
            Biological Hazard Factors (Animal Origin) for Agrifood Safety and
            Quality, Ministry of Agriculture of China, Yangzhou University,
            No.48 Wenhui East Road, Yangzhou, Jiangsu 225009, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: HGAP v. 4
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100.0x
            Sequencing Technology             :: PacBio RS
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 07/22/2023 01:28:34
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,879
            CDSs (total)                      :: 4,753
            Genes (coding)                    :: 4,645
            CDSs (with protein)               :: 4,645
            Genes (RNA)                       :: 126
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 108
            CDSs (without protein)            :: 108
            Pseudo Genes (ambiguous residues) :: 0 of 108
            Pseudo Genes (frameshifted)       :: 40 of 108
            Pseudo Genes (incomplete)         :: 73 of 108
            Pseudo Genes (internal stop)      :: 21 of 108
            Pseudo Genes (multiple problems)  :: 24 of 108
            Pseudo Genes (short protein)      :: 1 of 108
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP077682.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3877
                     /organism="Salmonella enterica subsp. enterica serovar
                     Kentucky"
                     /mol_type="genomic DNA"
                     /strain="YZ20MCS16"
                     /serovar="Kentucky"
                     /isolation_source="market chicken"
                     /sub_species="enterica"
                     /db_xref="taxon:192955"
                     /plasmid="unnamed2"
                     /geo_loc_name="China:Jiangsu Province,Yangzhou"
                     /lat_lon="32.24 N 119.26 E"
                     /collection_date="2020"
                     /collected_by="Wang Yan"
     gene            join(2977..3877,1..5)
                     /locus_tag="KTJ81_RS24230"
     CDS             join(2977..3877,1..5)
                     /locus_tag="KTJ81_RS24230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019725130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_094322853.1"
                     /translation="MSNVALKLFNDRLPHKPYFTDELQCGLRIAGKERAILAKYIQFNQ
                     PHAQYWLCFDVDRPGAAIDWSDRNAPAPTLTIMNKANGHAHLLYALKTAVRTAPDGKMK
                     PLKYAAAVESALREKLGADVGYSGLICKNPNHENWQIAVWQPELYTLDWLADSLDLNSA
                     NEKTILPDYGLGRNCTLFDKTRKWAYRAIRQGWPEYEQWLKACYERASAYNLQFISPLD
                     EKEVNGIAKSIANWTYKKFSKVKFEIYVSYTHSSEIQSRRGIASGIKRYIGSLEEQKPW
                     DKLGISRRTYFYKRKKGILK"
                     /name="replication initiation protein"
     gene            2..685
                     /locus_tag="KTJ81_RS24235"
     CDS             2..685
                     /locus_tag="KTJ81_RS24235"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_094322852.1"
                     /translation="MKKILPFIFMLASCGHYVDGYDGYTKAQLERMDQDIIRYYNKTPV
                     NDGTVFGYNFTKLSNRQYLNQSGFINVISDHKSVDVYEKKNISDGILKTSMIVIKNNKP
                     ITLYVAFETLNKGDIPDSFIDAINNLIANNYGVEPIVGTKIKLMTKSDYKYKYIKNRPS
                     KSDYINYKSGISNIIESISYSYDKSKSRYDFNKVVYRIDFVGFAMQQQKYLSAQERSRV
                     DFIGS"
                     /name="hypothetical protein"
     gene            926..1255
                     /locus_tag="KTJ81_RS24240"
     CDS             926..1255
                     /locus_tag="KTJ81_RS24240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006674374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_094322851.1"
                     /translation="MEKRTKEIKIRLTDDEHQRLLERSQRTHLAEWLRELGLGERTPSK
                     RRKLPDVDPQLFRQIAGTSNNLNQIARKLNQMESLVAEDKIRLLSLLTSIDRQLTEILE
                     QHRDR"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            1245..2768
                     /locus_tag="KTJ81_RS24480"
     CDS             1245..2768
                     /locus_tag="KTJ81_RS24480"
                     /inference="COORDINATES: protein motif:HMM:NF015397.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /protein_id="WP_239637988.1"
                     /translation="MIVKFNSRGAGAGSGPVDYLLGKERNREQAKTLRGDPERVKTLID
                     TCDFARTYTSGVLSFEEKDLPDVDKQQLMDELEQTLLPGLDKDQYSILWVEHQDKGRLE
                     LNFVIPNIELHSGKRLQPYYDRADRPRVNAWQTLTNDRLGLSDPNDPERRRELTPGRDL
                     PKNSQKAAESITAGLSHLAMQGLVRNRQDVINVLESAGMTIARETKSSISIASPDGGKN
                     LRLKGALYERDFRFSESLRGELEAAGATYRDARESRISEAERCYQRGIELKREEYQQRY
                     PRRDPTTPTALENHLPAGNEMAVDWPVIHRPDLRRTDRGNLLVSEPATRGNTDQRTESS
                     RAEFQNGQGDRGTERDRQIPRSVLHHPAEARQQHTDLPLPETNGSELQRQITQERSPEP
                     LSDDLTHSGKESHDRDRKTLVERIRELTTRLKDTAASLTRQFQEFTGHVRENTARESSL
                     SQSLHEAEPASRGLEQASKRLEQHSESLSQTVAAKELSQLKENDRGMSL"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
ORIGIN
        1 aatgaaaaaa atactacctt ttatatttat gctcgcatct tgcggacatt atgttgatgg
       61 atatgacgga tatactaagg ctcagctaga gcggatggat caagatatca ttagatatta
      121 caataaaacc ccagtgaatg atgggactgt ttttggttat aatttcacca agttatctaa
      181 caggcaatat ttgaatcagt ctggttttat aaatgtcatt tccgaccata agtcagtaga
      241 tgtttacgag aaaaaaaata ttagtgatgg cattttgaaa acatccatga tcgtaattaa
      301 aaataataaa ccaattactc tctacgtggc ttttgaaact ttaaataaag gagatatccc
      361 tgatagtttt attgatgcta ttaataatct aatagctaat aattatggtg tagaaccaat
      421 tgtcggaacc aaaattaaat taatgacaaa aagtgattac aaatataaat atatcaaaaa
      481 taggccatcg aagtctgatt atataaatta taaatcaggg ataagtaaca ttatagaatc
      541 catctcatat agctatgata aatcaaaatc caggtatgat tttaacaaag tcgtatatcg
      601 cattgatttt gtcggttttg ctatgcaaca acagaagtac ttgtctgcac aggaaaggtc
      661 cagagtcgat ttcatcggta gctagacttc tattcttttt gcactcgaac ctatatcaga
      721 taacagcccc tttatggggc ttttttattt ttccgtgact tgatatttta agtagataaa
      781 tatacttata agccagtaca cacggagtcc cctctaacga gggttcaccg tgactggttc
      841 agggggctcg ccgccccccg aaaccccggg catccactgc gaaactttcg cacttggcgt
      901 gcaaaacttt ctcagcggag tcggtatgga aaagcgcacc aaagaaatca aaatcaggct
      961 caccgatgat gaacatcaac gacttcttga gcggagtcag agaacccatc tagcggagtg
     1021 gttacgtgaa cttggattag gtgaacggac accctcaaag cgtcgtaaat taccggatgt
     1081 tgatccgcag ttattccgac agatagccgg cacgagtaac aaccttaacc agatagctcg
     1141 taaacttaat cagatggaga gtctggtcgc tgaggacaaa atccggttac tgagcttact
     1201 cacgagtatc gatcgccagt taactgagat actggagcag catcgtgatc gttaaattta
     1261 attcccgtgg tgcgggtgct ggcagtggtc ccgtggatta tcttctcggc aaagaacgta
     1321 atcgtgaaca ggccaaaacc ttacggggtg atcccgaacg ggtaaaaacc ctgatagaca
     1381 cctgcgattt cgctcgaacc tatacgtctg gtgtcctctc gtttgaagag aaagatctcc
     1441 ctgacgtaga caaacagcag ctgatggacg aacttgagca aacgctactc cctggacttg
     1501 ataaagacca atacagcatc ctttgggttg agcatcagga caaaggccgg ttagagctta
     1561 attttgtcat cccgaacatc gaattacaca gcggtaaacg tctacaaccc tattacgacc
     1621 gtgccgaccg ccctcgggtc aatgcatggc aaacgctgac caatgaccga ctcggattaa
     1681 gtgaccccaa cgacccagaa cgccggcgtg aactcacccc gggcagagac ttgccgaaaa
     1741 acagccaaaa agcggcggag tccattacgg caggactctc tcacctcgcc atgcaagggc
     1801 ttgttcgtaa ccgtcaggat gtcatcaacg tcctagaatc tgccggcatg accattgccc
     1861 gagaaaccaa atccagcatc agcatcgcct caccggacgg cggtaaaaac ctcagactca
     1921 aaggagcact ctatgagcgg gatttccgat ttagcgaaag ccttcgagga gaactcgaag
     1981 cagcaggcgc aacataccga gacgcacgtg aaagccgaat ttcagaagct gaacgctgct
     2041 atcagcgagg aattgaactc aagcgtgaag agtatcaaca gcgctatcca agacgcgacc
     2101 caacaacacc aacagcactt gaaaaccatt taccggccgg taatgaaatg gctgtggatt
     2161 ggcctgttat tcatcgccct gatttgcgcc gcactgatcg ggggaaccta ctggtatctg
     2221 aaccagcaac tcgaggaaat acagaccaac gaacagagtc tagccgtgct gaattccaaa
     2281 acgggcaagg ggatcgtggt acagaaaggg acaggcaaat accaaggtca gtactacatc
     2341 atcctgccga agcgcgccag caacatacag acttacccct accagaaaca aacggtagtg
     2401 aattacagcg tcaaataacc caagagcgct caccagagcc tctcagcgac gatttaaccc
     2461 actcaggcaa agaatcccat gaccgagaca gaaaaactct tgttgagcgc attagagagc
     2521 ttacaacacg actcaaagac acagcagcaa gccttactcg acagtttcag gagtttacag
     2581 gccatgtacg agaaaacacg gcaagagaat caagccttag ccaatcactg cacgaggctg
     2641 aaccagcaag tcgagggctt gagcaagcaa gtaaacgact tgagcaacac agtgaatcgc
     2701 ttagccagac tgtagccgcc aaagagctga gccagcttaa agaaaatgac cgagggatga
     2761 gcctgtaatt tgttggtata cggagaaatt attcgaggaa ctcgacagaa actgtcattt
     2821 gcgtgtaact ttaatgccat tagaaaagac aacgccccga attcatatct caacttggcg
     2881 gaagggaata tgaaatcagg gcgcaggtaa aaacctaaga aggatattag cacatgagac
     2941 gtgcaacaca acagcccgcc ataagcgcag ggctcattga gtaacgtagc actcaaactt
     3001 tttaacgaca gattgcccca caaaccgtac ttcacggacg aactgcaatg cggtttacgt
     3061 atcgcaggaa aagagcgggc aatccttgcc aaatatatcc agtttaacca acctcacgct
     3121 caatactggc tctgctttga cgtagacaga ccgggcgctg ccattgattg gagcgaccgt
     3181 aacgctcctg cgcccacact cactatcatg aacaaagcca atggccatgc acacctactt
     3241 tacgccctaa aaacagcggt acgcacggca ccagatggaa aaatgaaacc actcaaatat
     3301 gcagcggcgg ttgagagtgc gctgcgtgaa aaattaggcg ctgacgtggg gtattcgggg
     3361 ttaatttgca agaatccaaa ccacgaaaac tggcaaatcg ctgtttggca gccagaactg
     3421 tataccctcg actggcttgc agactcactt gatctgaact cagccaacga aaaaactatc
     3481 ctccccgatt atggcttagg ccgtaactgc acactgttcg ataaaacgag aaagtgggct
     3541 taccgcgcta tccgtcaagg ttggcctgag tatgagcagt ggctaaaagc ctgttatgaa
     3601 agagctagtg cttataatct gcaatttata tcaccactgg atgaaaaaga ggttaatgga
     3661 attgctaaaa gtattgcgaa ttggacttac aaaaaattta gtaaagttaa attcgaaatt
     3721 tatgtgagtt atactcattc ttcagaaatt caatctcgcc gaggtattgc ttccggaatt
     3781 aaaaggtata tcggtagttt agaagaacaa aaaccatggg ataagttagg aattagcagg
     3841 agaacttatt tctataaaag gaaaaaagga atattaa
//
