LOCUS       NZ_CP077681             3895 bp    DNA     circular CON 22-JUL-2023
DEFINITION  Salmonella enterica subsp. enterica serovar Kentucky strain
            YZ20MCS16 plasmid unnamed1, complete sequence.
ACCESSION   NZ_CP077681
VERSION     NZ_CP077681.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN19842584
            Assembly: GCF_019063905.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Kentucky
  ORGANISM  Salmonella enterica subsp. enterica serovar Kentucky
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3895)
  AUTHORS   Mei,C.
  TITLE     Whole genome of Salmonella enterica serovar Kentucky YZ20MCS16
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3895)
  AUTHORS   Mei,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-JUN-2021) Key Laboratory of Prevention and Control of
            Biological Hazard Factors (Animal Origin) for Agrifood Safety and
            Quality, Ministry of Agriculture of China, Yangzhou University,
            No.48 Wenhui East Road, Yangzhou, Jiangsu 225009, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: HGAP v. 4
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100.0x
            Sequencing Technology             :: PacBio RS
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 07/22/2023 01:28:34
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,879
            CDSs (total)                      :: 4,753
            Genes (coding)                    :: 4,645
            CDSs (with protein)               :: 4,645
            Genes (RNA)                       :: 126
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 108
            CDSs (without protein)            :: 108
            Pseudo Genes (ambiguous residues) :: 0 of 108
            Pseudo Genes (frameshifted)       :: 40 of 108
            Pseudo Genes (incomplete)         :: 73 of 108
            Pseudo Genes (internal stop)      :: 21 of 108
            Pseudo Genes (multiple problems)  :: 24 of 108
            Pseudo Genes (short protein)      :: 1 of 108
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP077681.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3895
                     /organism="Salmonella enterica subsp. enterica serovar
                     Kentucky"
                     /mol_type="genomic DNA"
                     /strain="YZ20MCS16"
                     /serovar="Kentucky"
                     /isolation_source="market chicken"
                     /sub_species="enterica"
                     /db_xref="taxon:192955"
                     /plasmid="unnamed1"
                     /geo_loc_name="China:Jiangsu Province,Yangzhou"
                     /lat_lon="32.24 N 119.26 E"
                     /collection_date="2020"
                     /collected_by="Wang Yan"
     gene            51..497
                     /locus_tag="KTJ81_RS24215"
     CDS             51..497
                     /locus_tag="KTJ81_RS24215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000184721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraD"
                     /protein_id="WP_021537414.1"
                     /translation="MTNREEWLSAKIAYINGLKSPSEQQRLLVLLAEKKNRTTTDEKTL
                     SALIRAEKTAEKAAAAKARVTAIIAAERKAAARAERKARDHELYKAAGLMIVAGLVDSK
                     TGKPKFSAAELVGALAGIAELPRNHPKWQEWEKRGKELLAKDSA"
                     /name="conjugal transfer protein TraD"
     gene            complement(758..1777)
                     /locus_tag="KTJ81_RS24220"
     CDS             complement(758..1777)
                     /locus_tag="KTJ81_RS24220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005221104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_023148269.1"
                     /translation="MSAALQYFEENLPHRPYHTDDLAFGLRISGKGRALLARYIQQNQP
                     HAQFWLVFDVDREGAAIDWSDRNAPAPNITVKNPVNGHAHLLYALNIAVRTAPDASVKA
                     LKYAAAVERSLCEKLCADVNYSGLICKNPFHLEWQVMEWREDAYTLDELADYLDLSASE
                     RRSIDKHYGMGRNCHLFEMTRKWAYRAIRQGWPAFSQWLEAVNQRVEMYNASLPVPLSL
                     AECRAIGKSIAKYTHRNFTPETFAQYVADTHTPEIQAARGRKGGKANSSENQSDKGKKS
                     AAVRWTANDDKRRRALDMYILGASTEDIAVAVGVSSRTIRRWMDNSGEWLTKKQIIKC"
                     /name="replication initiation protein"
     gene            complement(2233..3774)
                     /locus_tag="KTJ81_RS24225"
     CDS             complement(2233..3774)
                     /locus_tag="KTJ81_RS24225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001624483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobA/MobL family protein"
                     /protein_id="WP_049088048.1"
                     /translation="MASYHCTVKTGAKGAALKHADYISRSGEYKSYKSREDLEFSSSGN
                     MPSWAKKNPAELWKAADEFERKNGTAYREIEIALPRELTREQRIELVEDFVQKELGDRH
                     AYQYAIHNPPGAIDGKEQPHAHIMFCERINDGIERDPQQFFKRANSKSPERGGAKKASI
                     PQTAGERKAALVALRSRWADVQNEHLARHGHESRVDHRSLKEQGIKRTPEVHLGPVHAA
                     NLNEGQIAAIQEHRAARQQERAARNPAPERQQELEQKQKIRTVERSPELLAQYRKVMKT
                     VIQGEERLARLGDANPDALKEHKLLQNAKAKKESLSEWSRRIYEGARYLDKLGRNVVSA
                     QRELRELQEQRNALNGIRGLFRGADKREIDARILEQESVLETAEREENEFRYKLQQAES
                     EWKEKYAAFQRTEGYKYVDPTGLDKYREREILAAVSLENTRQKVAEEISVARSQMLSLE
                     PELNMSGDEKAQMRHELLAEMALEQQQQEEKALRIQQTWVREASRSNERDQDMER"
                     /name="MobA/MobL family protein"
     Typing          complement(1003..1777)
                     /name="Col156"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="96.778"
                     /coverage="83.0"
                     /evalue="0.0"
     Typing          complement(2237..3774)
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="92.278"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 tattatgcac aataacaact cacattaacg gcaaaagtgc agaggtaaga atgacaaatc
       61 gtgaagagtg gttaagtgca aaaattgcct acatcaacgg actgaaatca ccgtcagagc
      121 agcagagatt acttgtgtta ctggcagaga aaaaaaaccg aacaacgacg gatgaaaaaa
      181 cgttgtccgc actgatacgg gcagaaaaaa ccgcagagaa agcagccgca gcaaaagcca
      241 gggtaacggc aatcatagcg gcagaacgga aggcagccgc aagggcagaa cgaaaggcgc
      301 gggatcatga actttacaag gccgcaggcc tcatgattgt ggcaggactg gtggacagca
      361 aaaccggaaa accaaagttt agtgctgccg aactggtagg cgcactcgca ggaatcgcag
      421 agctaccgcg caaccatccc aaatggcagg aatgggaaaa acgcgggaaa gagctactcg
      481 ccaaagacag tgcgtaagag cctccgttca cgttccggtt ccctggtgct tcctcgctca
      541 ttcgctcgct acgctcggtc atgagactgc ggcgagcacg accacctcaa tcatgcggta
      601 agcagcacca ttgctgggct gaaaggagaa aaccgccgga aagcccgctg ctcaaaaaga
      661 cgccgaaagg cgctgttatc tgatataggc ttgttcatgt ccgcgaattt aaccaaccat
      721 taacaaaaaa cggggggttt tgttgcttct ttgttaacta gcatttaatt atttgtttct
      781 tggttagcca ttctccagaa ttatccatcc agcgtcgaat agtccggctg ctaacaccaa
      841 ccgccactgc aatatcttcc gttgacgctc ccaagatata catatcaagc gccctacgac
      901 gtttgtcgtc gttagcagtc caccgaacag cggcgctttt tttccctttg tccgactgat
      961 tttctgacga attggccttc ccgcccttgc gaccgcgtgc tgcctgaatt tctggcgtgt
     1021 gcgtatcagc cacatactgt gcgaaagttt ccggcgtgaa gttcctgtgc gtgtatttcg
     1081 caatgctctt gccaatagcc cgacattcag ccagtgaaag cggaacggga agcgatgcat
     1141 tgtacatttc gacacgctgg ttcaccgctt caagccactg tgagaacgct ggccagccct
     1201 gacgaatcgc cctgtaagcc catttgcgcg tcatttcgaa caggtggcag tttcgcccca
     1261 tcccgtaatg tttatcgatg ctacgacgct ctgaggcgct caaatcgaga taatctgcca
     1321 gttcatcgag ggtataggcg tcctcgcgcc actccatcac ctgccattcc aggtggaacg
     1381 gatttttgca aatcaggccg ctgtagttca catcagcaca aagtttctca cacagcgaac
     1441 gttcaaccgc tgcggcatat ttcagcgcct taaccgaggc atcaggcgcg gttctcacgg
     1501 cgatgttgag tgcgtagagc aggtgagcgt gtccgttcac aggattttta acggtgatgt
     1561 tcggcgcggg ggcgttccgg tcgctccagt caatcgcagc cccctcgcgg tcaacgtcaa
     1621 aaaccagcca gaactgcgca tgaggctggt tctgctggat gtaccgcgca agaagcgcac
     1681 gccctttgcc ggagatgcga aggccgaaag cgagatcatc cgtgtgatag gggcggtggg
     1741 gtaaattttc ttcgaagtat tgaagcgcgg cgctcatgtg ttacgattcc ttccaggtta
     1801 tcgaccgacc tcgcccctgt attctcgtga caatcttggc ggagagacac gaatttcagg
     1861 ggcgtttgtt tttcagtcgc ttacactacc cccaacaaca aaacctgtcg agccttcccg
     1921 caaaaccgat ccatttacca taactcccgt tgtgcgcccc ccttaaaacg ctctcagacg
     1981 ctttctgacg caaaaaacgc agaaatacaa ggaaacacca ggaagaacca gaaaaacgcg
     2041 gcagaattgt ttttaggagg ctgcataact attcacgaaa gcaatgcgcg atctgtttcg
     2101 agcgttcaga agggcgaacg ggtcaaaaca gcaaactttc tcatcagaaa acggtgaacg
     2161 ggacgcggaa ttttttcgcg ttccgtgaaa cgttggcggg gttcggggcg cagtcccgat
     2221 attgctacat tttcaacgct ccatatcttg atcacgttcg ttactacgag atgcctctct
     2281 gacccaggtt tgctgtatac gcagcgcttt ttcttcctgt tgctgctgtt ccaacgccat
     2341 ttctgccagt aactcatgtc gcatttgagc tttttcatct ccagacatat taagttcagg
     2401 ctccagagat aacatctggc tacgggcaac ggatatttct tcggcaactt tttgcctggt
     2461 gttctctaaa gagactgcgg ccagaatctc acgttctctg tacttgtcca gccccgtagg
     2521 atcaacgtac ttatatccct cggtacgctg aaaagcagcg tatttctctt tccactcgga
     2581 ctcagcttgc tgtagcttgt acctgaactc attctcttca cgttcggcgg tttccagcac
     2641 gctttcttgc tccagaatac gcgcatcaat ctcccttttg tcagcccccc gaaacaggcc
     2701 acgaatccca ttcagagcat tgcgttgttc ctgtaactct cgtagctccc tttgtgcgga
     2761 aacaacatta cgccccagtt tgtctaaata ccgtgcccct tcatatattc gcctgctcca
     2821 ttcggaaaga gattcttttt tagctttcgc attctgaagc agcttatgtt ctttgagcgc
     2881 atcggggttg gcatccccta aacgagcaag cctttcctct ccctgaatga ccgttttcat
     2941 aaccttgcgg tactgagcca gtaactccgg tgaacgctca actgtcctga ttttttgctt
     3001 ttgctccagt tcctgttggc gctctggcgc tgggttgcgt gctgcgcgtt cttgctgacg
     3061 cgccgccctg tgctcctgaa ttgccgcgat ctgcccctcg ttcagattgg cggcgtgaac
     3121 agggccaaga tgaacttccg gcgtgcgctt gatgccctgt tctttcagcg aacgatgatc
     3181 tacgcgcgac tcgtgaccgt gtcgcgcaag gtgctcattc tgcacatcag cccagcggga
     3241 acgtagcgca acaagggcgg cttttcgctc tccggcggtc tggggaatac tcgccttttt
     3301 tgcgcctccc cgctccggtg atttgctgtt ggcgcgttta aaaaattgct gcggatcgcg
     3361 ttcaatacca tcattaatcc gctcgcaaaa catgatatgc gcgtgtggct gttcctttcc
     3421 gtcgattgca cctggcggat tgtggatcgc gtactggtag gcatggcgat cgccaagttc
     3481 cttttgcacg aaatcttcaa caagttctat ccgttgttcg cgtgtcagtt cacgcggtaa
     3541 tgcgatctca atttcacggt atgccgtccc gttttttcgt tcaaattcat ctgcggcttt
     3601 ccacagttct gcgggatttt tcttcgccca tgatggcatg ttaccggatg acgaaaactc
     3661 cagatcctcc cgcgatttgt agctcttata ttcgccggat ctggaaatgt aatcagcatg
     3721 ttttaaggct gcgccttttg ctccggtttt aacggtgcaa tggtagcttg ccatctgcct
     3781 tttagccctc cgcaggagcg cacagtttct tgatgaaatc gagaaactac taagtgcgca
     3841 tccctgaatt aatcagggat gattttacgg tctcacacgc aggcaaacaa ggtga
//
