LOCUS       NZ_CP076866             2509 bp    DNA     linear   CON 10-JAN-2024
DEFINITION  Klebsiella pneumoniae strain V3 plasmid unnamed3.
ACCESSION   NZ_CP076866
VERSION     NZ_CP076866.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN19730657
            Assembly: GCF_019038575.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 2509)
  AUTHORS   Janssen,L., Almeida,F., Campos,T., Pappas,G., Martins,V. and
            Damasceno,T.
  TITLE     A novel multidrug resistant, non-Tn4401 genetic element
            (NTEKPC)-bearing, strain type of Klebsiella pneumoniae isolated from
            an urban lake with drinking and recreational water reuse
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2509)
  AUTHORS   Janssen,L. and Almeida,F.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-JUN-2021) Department of Cell Biology, University of
            Brasilia, Campus Universitario Darcy Ribeiro, Instituto de Ciencias
            Biologicas, Bloco K, 1 andar, Brasilia, DF 70910-900, Brazil
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Flye v. 2.7-b1585
            Assembly Name                     :: KpV3
            Genome Representation             :: Full
            Expected Final Version            :: No
            Genome Coverage                   :: 470.0x
            Sequencing Technology             :: Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/10/2024 02:23:25
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,343
            CDSs (total)                      :: 5,223
            Genes (coding)                    :: 5,007
            CDSs (with protein)               :: 5,007
            Genes (RNA)                       :: 120
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 216
            CDSs (without protein)            :: 216
            Pseudo Genes (ambiguous residues) :: 0 of 216
            Pseudo Genes (frameshifted)       :: 84 of 216
            Pseudo Genes (incomplete)         :: 57 of 216
            Pseudo Genes (internal stop)      :: 102 of 216
            Pseudo Genes (multiple problems)  :: 20 of 216
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP076866.1.
            Bacteria and source DNA available from Laboratorio de Analises
            Moleculares de Patogenos, Block I, Institute of Biological
            Sciences, University of Brasilia, Brasilia, Brazil.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..2509
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="V3"
                     /isolation_source="lake"
                     /db_xref="taxon:573"
                     /plasmid="unnamed3"
                     /geo_loc_name="Brazil: Paranoa Lake, Brasilia"
                     /lat_lon="15.740962 S 47.881235 W"
                     /collection_date="2019-02"
                     /collected_by="Luis Janssen"
     gene            complement(<1..>2509)
                     /locus_tag="KRP25_RS26295"
                     /old_locus_tag="KRP25_26295"
                     /pseudo=""
     CDS             complement(<1..>2509)
                     /locus_tag="KRP25_RS26295"
                     /old_locus_tag="KRP25_26295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001114181.1"
                     /note="incomplete; too short partial abutting assembly gap;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="Ig-like domain repeat protein"
                     /name="Ig-like domain repeat protein"
ORIGIN
        1 aggtatcaac tgttactgtc acgtctgcat ctgcaacatc cacgttacct tgtggatcga
       61 ctgcttctgc atggatcgct acagggcctt cgcctgtgac aggaatcgct gctgtgatga
      121 agccgttagt aaggtcagct gctgtcacgg tgtagttagt accgttcaca ttcaccactg
      181 tgccgtcgat tgcatctggt cccaacgcca cttgtgcatt gaaggtacca tctgtgccta
      241 gctcgtctgc atttaagata ccgtcgccat ttaagtcttc aggaatcgtg atcgcaccga
      301 tcaggtctgc aggtaaggta tcaactgtta ctgtcacgtc tgcatctgca acatccacgt
      361 taccttgtgg atcgactgct tctgcatgga tcgctacagg gccttcgcct gtgacaggaa
      421 tcgctgctgt gatgaagccg ttagtaaggt cagctgctgt cacggtgtag ttagtaccgt
      481 tcacattcac cactgtgccg tcgattgcat ctggtcccaa cgccacttgt gcattgaagg
      541 taccgtctgt gcctagctcg tctgcattta agataccgtc gccatttaag tcttcaggaa
      601 tcgtgatcgc accgatcagg tctgcaggta aggtatcaac tgttactgtc acatctgcat
      661 ctgcaacatc cacgttacct tgtggatcga ctgcttctgc atggatcgct acagggcctt
      721 cgcctgtgac aggaatcgct gctgtgatga agccgttagt aaggtcagct gctgtcacgg
      781 tgtagttagt accgttcaca ttcaccactg tgccgtcgat tgcatctggt cccaacgcca
      841 cttgtgcatt gaaggtaccg tctgtgccta gctcgtctgc atttaagata ccgtcgccat
      901 ttaagtcttc aggaatcgtg atcgcaccga tcaggtctgc aggtaaggta tcaactgtta
      961 ctgtcacgtc tgcatctgca acatccacgt taccttgtgg atcgactgct tctgcatgga
     1021 tcgctacagg gccttcgcct gtgacaggaa tcgctgctgt gatgaagccg ttagtaaggt
     1081 cagctgctgt cacggtgtag ttagtaccgt tcacattcac cactgtgcca tcgattgcat
     1141 ctggtcccaa cgccacttgt gcattgaagg taccgtctgt gcctagctcg tctgcattta
     1201 agataccgtc gccatttaag tcttcaggaa tcgtgatcgc accgatcagg tctgcaggta
     1261 aggtatcaac tgttactgtc acgtctgcat ctgcaacatc cacgttacct tgtggatcga
     1321 ctgcttctgc atggatcgct acagggcctt cgcctgtgac aggaatcgct gctgtgatga
     1381 agccgttagt aaggtcagct gctgtcacgg tgtagttagt accgttcaca ttcaccactg
     1441 tgccgtcgat tgcatctggt cccaacgcca cttgtgcatt gaaggtaccg tctgtgccta
     1501 gctcgtctgc atttaagata ccgtcgccat ttaagtcttc aggaatcgtg atcgcaccga
     1561 tcaggtctgc aggtaaggta tcaactgtta ctgtcacgtc tgcatctgca acatccacgt
     1621 taccttgtgg atcgactgct tctgcatgga tcgctacagg gccttcgcct gtgacaggaa
     1681 tcgctgctgt gatgaagccg ttagtaaggt cagctgctgt cacggtgtag ttagtaccgt
     1741 tcacattcac cactgtgccg tcgattgcat ctggtcccaa cgccacttgt gcattgaagg
     1801 taccgtctgt gcctagctcg tctgcattta agataccgtc gccatttaag tcttcaggaa
     1861 tcgtgatcgc accgatcagg tctgcaggta aggtatcaac tgttactgtc acgtctgcat
     1921 ctgcaacatc cacgttacct tgtggatcga ctgcttctgc atggatcgct acagggcctt
     1981 cgcctgtgac aggaatcgct gctgtgatga agccgttagt aaggtcagct gctgtcacgg
     2041 tgtagttagt accgttcaca ttcaccactg tgccatcgat tgcatctggt cccaacgcca
     2101 cttgtgcatt gaaggtaccg tctgtgccta gctcgtctgc atttaagata ccgtcgccat
     2161 ttaagtcttc aggaatcgtg atcgcaccga tcaggtctgc aggtaaggta tcaactgtta
     2221 ctgtcacgtc tgcatctgca acatccacgt taccttgtgg atcgactgct tctgcatgga
     2281 tcgctacagg gccttcgcct gtgacaggaa tcgctgctgt gatgaagccg ttagtaaggt
     2341 cagctgctgt cacggtgtag ttagtaccgt tcacattcac cactgtgcca tcgattgcat
     2401 ctggtcccaa cgccacttgt gcattgaagg taccgtctgt gcctagctcg tctgcattta
     2461 agataccgtc gccatttaag tcttcaggaa tcgtgatcgc accgatcag
//
