LOCUS       NZ_CP076016             1240 bp    DNA     circular CON 10-JAN-2024
DEFINITION  Klebsiella pneumoniae subsp. pneumoniae strain WGR351 plasmid
            p8WGR351, complete sequence.
ACCESSION   NZ_CP076016
VERSION     NZ_CP076016.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN18317431
            Assembly: GCF_018623335.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae subsp. pneumoniae
  ORGANISM  Klebsiella pneumoniae subsp. pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 1240)
  AUTHORS   Nicholas,L., Sunil,K., Mohammad,F., Prashant,J.R., Balaji,V. and
            Yamuna,B.D.
  TITLE     Complete genome of Klebsiella pneumoniae_WGR351
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1240)
  AUTHORS   Nicholas,L., Sunil,K., Mohammad,F., Prashant,J.R., Balaji,V. and
            Yamuna,B.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-MAR-2021) Clinical Microbiology, Christian Medical
            College, Ida Scudder Road, Vellore, Tamil Nadu 632004, India
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2021
            Assembly Method :: CANU v. v.1.7; UNICYCLER HYBRID v. v.0.4.6
            Assembly Name                     :: WGR351
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 133.0x
            Sequencing Technology :: Illumina HiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/10/2024 02:02:17
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,689
            CDSs (total)                      :: 5,565
            Genes (coding)                    :: 5,440
            CDSs (with protein)               :: 5,440
            Genes (RNA)                       :: 124
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 88
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 125
            CDSs (without protein)            :: 125
            Pseudo Genes (ambiguous residues) :: 0 of 125
            Pseudo Genes (frameshifted)       :: 46 of 125
            Pseudo Genes (incomplete)         :: 71 of 125
            Pseudo Genes (internal stop)      :: 22 of 125
            Pseudo Genes (multiple problems)  :: 12 of 125
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP076016.1.
            Bacteria and source DNA available from Wockhardt Research Centre.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1240
                     /organism="Klebsiella pneumoniae subsp. pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="WGR351"
                     /isolation_source="Pus"
                     /host="Homo sapiens"
                     /sub_species="pneumoniae"
                     /db_xref="taxon:72407"
                     /plasmid="p8WGR351"
                     /geo_loc_name="India"
                     /lat_lon="12.9165 N 79.1325 E"
                     /collection_date="2017"
                     /collected_by="Wockhardt Research Centre"
     gene            complement(278..787)
                     /locus_tag="J4H97_RS28270"
                     /old_locus_tag="J4H97_28270"
     CDS             complement(278..787)
                     /locus_tag="J4H97_RS28270"
                     /old_locus_tag="J4H97_28270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016243913.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_052923824.1"
                     /translation="MIVASEHQTKLRQKEIQEIDRKASKEHEEAKKNSNFTQTYPKGWQ
                     RIRELVRDKQGAAAIGLYSFFAEHIDPTCGAVVCDQQFLANQMGVSTRTIRRWLDYLEE
                     KGALVRIPVAGKVCAYALDPHEVWKGYNTSKDYSAFVTKTLVNKDGEIKRRIMAMFSGE
                     ESGQEQ"
                     /name="helix-turn-helix domain-containing protein"
ORIGIN
        1 cggtaaatcg tgatgaggct tccaattaag ccaataattg tgatgattgt tgaagtgatc
       61 atgatgacct ccttgtcgat taattttctg tattacattc ctggctaagt acttttagtc
      121 ccaaagggat gcggcacatt acaaaagtga tgtgctgttt tatttattta tgggatttac
      181 tgcttaaagg gcggtttatc atggggatgg ctcgctgtgg cgaaccatcc cccttttcga
      241 gggtgggggt cgttccgagc cgtcaagagt cgcttcgcta ctgctcttga ccgctctcct
      301 ctccggaaaa catagccatt atccgacgtt ttatttctcc atctttgttc actaacgtct
      361 tggtaacaaa ggctgagtag tctttggatg tgttatatcc tttccagact tcatggggat
      421 ctaaagcgta agcacagacc ttgccagcaa ctggtattct taccaatgca cccttctctt
      481 ccaaataatc taaccaacga cgaattgtcc gagtagaaac acccatctga ttagctaaaa
      541 attgctggtc gcagaccacg gcaccacaag taggatctat gtgttcagcg aaaaatgagt
      601 aaagacctat agcagcagca ccctgtttgt ccctcacaag ctctctaatg cgttgccagc
      661 cctttgggta tgtctgggtg aagttgctat tcttcttcgc ctcctcatgc tctttagagg
      721 ccttcctgtc gatttcctgt atttctttct gtcttagttt tgtttgatgt tctgaggcta
      781 cgatcatatt tatccctccg tgtctttttg ataggacatt tttgtcccat cataggactt
      841 gcggtgtccc atgtccagac acatgcggac accagctgtg tcctcacgtg cggacaccag
      901 ctgtgtccta tcagaaaaaa acaattctat aaaaatcagt aatttattat tttcccctat
      961 tctcttctat gaaaaccaac agacaacacc aaagttcaag gtagctccct ccctccggtc
     1021 gggcattttg agggtcaggg ttcgccatag gcgaccgcgt tagcggcttg accttgacga
     1081 tcaaaatgcc cgcttaacct tgtatctggt gatggctcgc attgtgagcc atcaccatgc
     1141 atgacggttt taaggggttt cggggcaaag ccctgaacca gtcactccgc tagcggagtg
     1201 tatactggct aattagtgct tatccttagg gtatatctct
//
