LOCUS       NZ_CP076013             4245 bp    DNA     circular CON 10-JAN-2024
DEFINITION  Klebsiella pneumoniae subsp. pneumoniae strain WGR351 plasmid
            p5WGR351, complete sequence.
ACCESSION   NZ_CP076013
VERSION     NZ_CP076013.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN18317431
            Assembly: GCF_018623335.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae subsp. pneumoniae
  ORGANISM  Klebsiella pneumoniae subsp. pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 4245)
  AUTHORS   Nicholas,L., Sunil,K., Mohammad,F., Prashant,J.R., Balaji,V. and
            Yamuna,B.D.
  TITLE     Complete genome of Klebsiella pneumoniae_WGR351
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4245)
  AUTHORS   Nicholas,L., Sunil,K., Mohammad,F., Prashant,J.R., Balaji,V. and
            Yamuna,B.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-MAR-2021) Clinical Microbiology, Christian Medical
            College, Ida Scudder Road, Vellore, Tamil Nadu 632004, India
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2021
            Assembly Method :: CANU v. v.1.7; UNICYCLER HYBRID v. v.0.4.6
            Assembly Name                     :: WGR351
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 133.0x
            Sequencing Technology :: Illumina HiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/10/2024 02:02:17
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,689
            CDSs (total)                      :: 5,565
            Genes (coding)                    :: 5,440
            CDSs (with protein)               :: 5,440
            Genes (RNA)                       :: 124
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 88
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 125
            CDSs (without protein)            :: 125
            Pseudo Genes (ambiguous residues) :: 0 of 125
            Pseudo Genes (frameshifted)       :: 46 of 125
            Pseudo Genes (incomplete)         :: 71 of 125
            Pseudo Genes (internal stop)      :: 22 of 125
            Pseudo Genes (multiple problems)  :: 12 of 125
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP076013.1.
            Bacteria and source DNA available from Wockhardt Research Centre.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4245
                     /organism="Klebsiella pneumoniae subsp. pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="WGR351"
                     /isolation_source="Pus"
                     /host="Homo sapiens"
                     /sub_species="pneumoniae"
                     /db_xref="taxon:72407"
                     /plasmid="p5WGR351"
                     /geo_loc_name="India"
                     /lat_lon="12.9165 N 79.1325 E"
                     /collection_date="2017"
                     /collected_by="Wockhardt Research Centre"
     gene            complement(310..846)
                     /locus_tag="J4H97_RS28210"
                     /old_locus_tag="J4H97_28210"
     CDS             complement(310..846)
                     /locus_tag="J4H97_RS28210"
                     /old_locus_tag="J4H97_28210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002069891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_076978332.1"
                     /translation="MKKVYTAIILIVLLCGGVLSANYIFLQRHMNEVLKEDPRNDGISV
                     WVYYKWFVNSSEINYDLRSVSAENSSLDVSRVMLQFAEKVKDYDFSKVYLSYRGKDKFY
                     LKGEYFKTLGQEYGIQNPVYTLRTIPENVYMLNGERAYSVWEGGLLGVMGKQMEDLSGF
                     SKAWYLDDFIKSMSD"
                     /name="hypothetical protein"
     gene            complement(1130..1366)
                     /locus_tag="J4H97_RS28215"
                     /old_locus_tag="J4H97_28215"
     CDS             complement(1130..1366)
                     /locus_tag="J4H97_RS28215"
                     /old_locus_tag="J4H97_28215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001676031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_016947370.1"
                     /translation="MKRLINLTPAEKRFLDDAVAAAERASGKKLNQPNRHIVLNRARAQ
                     IESQRQAERQRSAREEERQQAEFTWSRPRAPRR"
                     /name="hypothetical protein"
     gene            2442..3428
                     /locus_tag="J4H97_RS28220"
                     /old_locus_tag="J4H97_28220"
     CDS             2442..3428
                     /locus_tag="J4H97_RS28220"
                     /old_locus_tag="J4H97_28220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001529700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_016245711.1"
                     /translation="MQNPKLQNLTDYSPSDAPWDAHKSVSDDVGGIYLLAAEYERYGAR
                     MASCGGLLRFGWSTLKETGETRLRLREAHFCRVRHCPVCQWRRSLMWQARFYQSLPRIV
                     ADYPDARWMFLTLTVRNCAIGELGETLNRMNMAFQRLKDRKEFRPVQGWIRTTEVTRGS
                     DGSAHPHFHTLMMVPPSMFTRDYVKHDRWVELWRECLRVNYDPNVDVRAVKPRKPKDGE
                     SLASATAELVRGAVAETLKYSTKPADMVADPEWFLELTKQTHKRRFVATGGALKDILKL
                     DQETDADMVIGDDIPEGDDDGSRIAFEWKTESKKYRRSPSKDKAESD"
                     /name="protein rep"
     gene            4061..4174
                     /locus_tag="J4H97_RS28660"
                     /old_locus_tag="J4H97_28225"
     CDS             4061..4174
                     /locus_tag="J4H97_RS28660"
                     /old_locus_tag="J4H97_28225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005761324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_071789001.1"
                     /translation="MHEPPVQSDCCALSGNYRLESNPVRHAKAPLAAATGN"
                     /name="replication initiation protein"
     Typing          complement(3530..3708)
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="84.066"
                     /coverage="83.0"
                     /evalue="3.53e-41"
     Typing          complement(3155..3343)
                     /name="ColpVC"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="88.947"
                     /coverage="98.0"
                     /evalue="1.39e-59"
     Typing          3685..4174
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="92.105"
                     /coverage="94.0"
                     /evalue="0.0"
ORIGIN
        1 tcctctaact agccagttac ctcggttcaa agagttgctg ctctgagaac cttcgagaaa
       61 accgccttgc tgggcggttt tttcgtttac agagcaagat attacgacgc aacagaaagg
      121 atctcaagaa gttccttgct gtattgctac tatcctagag atctgaccca ttaggggcat
      181 tatcagatga cggccttgta atccacgggg agcaggtcac acatctaaag catctacgag
      241 taaaaacacc ccagtgacca atgagcgatt tgcgtgagct aatcgtcaat gtatactgat
      301 cgcttcaaat taatcgctca tgcttttaat gaaatcatct aagtaccaag ccttagagaa
      361 accactaaga tcttccatct gttttcccat tacacccaga agcccaccct cccaaacact
      421 ataagctctc tctccattta acatatacac gttttccgga attgttctta atgtatatac
      481 ggggttttga ataccatatt cctgcccaag agttttaaaa tactctcctt ttaagtaaaa
      541 cttatctttc cctctgtaac taagataaac cttactaaaa tcataatctt tcactttttc
      601 agcaaattgc agcatcaccc tactaacatc cagtgaacta ttttctgcag aaacagaacg
      661 aaggtcataa ttaatctcgg aagagtttac aaaccactta taataaaccc aaacgctaat
      721 accatcattc cttggatctt ctttcagaac ctcattcatg tgcctttgaa gaaaaatgta
      781 gttggcagat aaaacaccac cacataagag tactattaat atgattgctg tatatacttt
      841 tttcatttct ataatccatc tcaactgctc taaagtttac cctgagattt ttaagctaag
      901 gtgccataag ttagcaataa gcatcgattt accataacgt cttcttacgc gcaccgcgaa
      961 aacggcctca gggcgtttct gcgccttcag ccacaaaaga gcacgtctta cccccagaaa
     1021 accgcccgga atcgctctgg tgagttttac ggtggcgaat gactatgcac cggagtgaat
     1081 accacgctgt ttcgccctga actccccaca aaaccgacga aagtggcaat cagcgacgcg
     1141 gcgcccgcgg acgcgaccag gtaaattccg cctgctgccg ctcctcctca cgcgcagatc
     1201 gctgccgttc tgcctggcgc tgcgattcga tctgtgcacg agccctgtta aggacaatgt
     1261 gcctgttggg ctgattcagc ttcttgcctg acgctctctc agcggcggca acagcatcgt
     1321 cgagaaatct tttctcggca ggcgtcaggt ttatcagtcg tttcatggcg ttctccggtc
     1381 agaataactc tgcacagtct gccagacacg gcgaacctca tgaagaacct gcagccggga
     1441 acggccctga gaaacggtga acgggaacgg attttaatcc ggtgccgtga agcgttggcg
     1501 gggtatcggg gcgcagccct gagatatcgt tttggtgccg gcatcatgat ggcggtactc
     1561 caaaaacaca tcttgtccta ttggttctac tccgatgcag gatagggcta acgccgcaaa
     1621 gtgacgtcac tcaattactg agttcggttt ccgaactcag ttgggacaag atgtgttttt
     1681 ggtacaccgc catcacgatg tcggtgccaa aacgattcgt cagggctgcg ccccgacacc
     1741 ctgccaacac ctcacgcagt cagattaaaa tctgccagcg ctcgctgttt ccgaaatcgt
     1801 caaactctaa atcgtggggt cccgctggct tgccagtggg ttccgattta gtgattgacg
     1861 acattgctga ttgaaaaatt ggctgaggtg gttggattca cgaagtgagg ccaaccacct
     1921 ggaagacggt ttttaattgt ctggtaccgg atacaaccag aacgaatgga gttggttctg
     1981 tcgtgatgcg aaaaagtatg ggttcgcaaa tcacagacta aatagattta cccaattcca
     2041 ttcgagtgag gttgttatgt tttttgaggt tcttaatcat gttgatagtg cgttgagcgt
     2101 tgctgtttcg ctcctggcgt tgtggcagtt tttggtggcg ggtgggcgtt gaatggctgg
     2161 ttcgatccgc gcgcgatcct tgtatttata cttaagggat aactctggcg ataaaaaatg
     2221 gcatcaagcc ttgcgtacca aggcttcggg gcttatttgc gttgtagaag gttttggaag
     2281 tattctgttg ggagtggtcg ccttaaaagc gacccccgca acgacggcca tcgttcgggg
     2341 gtgtgaccac ctgcagaaat tcgattcgaa gcgacaacca acaggtgata cggcaatgat
     2401 aacacgtcaa atgagccatc gcccagcatg ggacggtgtg catgcaaaac cctaaactcc
     2461 agaacctcac ggattactcc ccctcagacg cgccctggga cgctcacaaa agcgtttctg
     2521 acgacgtagg tgggatttac cttctcgcag ccgaatatga gcgctacggg gcgcgtatgg
     2581 cttcctgtgg cggtttactg aggtttggtt ggtctaccct caaagaaact ggagaaactc
     2641 gccttaggct acgtgaggcg catttctgtc gtgtccggca ctgtcctgtc tgccagtgga
     2701 ggcgatccct gatgtggcaa gcccgttttt atcagtccct gccgcgtatt gttgcggatt
     2761 atccagatgc acgctggatg ttcctgaccc tcacagtgcg aaactgcgcg atcggggaat
     2821 tgggtgagac acttaaccga atgaacatgg ccttccagcg acttaaggat cgcaaagagt
     2881 ttcgacctgt tcagggctgg atccgcacca cggaagttac acgtggaagt gacggtagtg
     2941 cgcacccgca ctttcacact ctgatgatgg ttcctccctc aatgttcacg cgagattacg
     3001 ttaaacatga ccgctgggta gagctttggc gagagtgttt gcgtgtgaat tacgatccga
     3061 atgttgatgt tcgagcagta aaaccccgca agcctaagga cggagaatca ttggcttctg
     3121 caactgcgga acttgtacgg ggcgcagtgg ctgaaaccct gaaatattcc acgaagccgg
     3181 ctgacatggt tgctgatcct gaatggttcc tcgaattgac taagcagaca cataagcgcc
     3241 gatttgtggc taccggtggc gcactcaaag acatactgaa actcgatcag gaaactgatg
     3301 ccgatatggt aatcggggat gatattcccg aaggcgatga tgatggttca cgcattgctt
     3361 ttgagtggaa aaccgaatcc aaaaagtacc gtcgctcacc gtcaaaagat aaagctgaat
     3421 cagactgaca gggtgtcggg gcgcagccct gaccacgacg tttttgagag gacgccgctt
     3481 gtcggcggta ctccaaaaac acatcttgtc ccgctttcag tttctgaatt tgcgggttcc
     3541 gggcgcagcg ccggaccagt cacgtagcgc tagcggagtg tatactggct taatatgtta
     3601 gttgggcgtg gtggctcagg gaagtgcttc atgtggcagg ggaaaaatgc ggctgcggtg
     3661 cgtaagtgca aaatgctgat gatggtgaaa tgacgcctcc tcgctcactc ggtcgctacg
     3721 ctcctgccgt gagactgcgg cgggcgttac ctgctcacga atgacgaggt aacgaaatga
     3781 agctgaggtc aagaagggcc cgaaaaagga tgcggcgctg ccgtttttcc ataggctccg
     3841 cccccctgac aagcatcaca aaatctgacg ctcaaatcag tggcggcgaa acccgacagg
     3901 acttaaagat cccaggcgtt tccccctggt ggctccctcg tgcgctctcc tgttcctgcc
     3961 tttcggttta ccggtgtcat tccgctgtta tggccgcgtt tatctcattc cacgcctgac
     4021 actcagttcc gggtaggcag ttcgctccaa gctggactgt atgcacgaac cccccgttca
     4081 gtccgactgc tgcgccttat ccggtaacta tcgtcttgag tccaacccgg taagacatgc
     4141 aaaagcgcca ctggcagcag ccactggtaa ctgatttaga ggagatagtc ttgaagtcat
     4201 gcgccagtta aggctaaact aaacgaacag ttttggtgac tgcgc
//
