LOCUS       NZ_CP075894             1782 bp    DNA     circular CON 10-JAN-2024
DEFINITION  Klebsiella pneumoniae strain GR390 plasmid p4GR390, complete
            sequence.
ACCESSION   NZ_CP075894
VERSION     NZ_CP075894.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN18317283
            Assembly: GCF_018604385.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 1782)
  AUTHORS   Nicholas,L., Sunil,K., Mohammad,F., Prashant,J.R., Balaji,V. and
            Yamuna,B.D.
  TITLE     Complete genome of Klebsiella pneumoniae_GR390
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1782)
  AUTHORS   Nicholas,L., Sunil,K., Mohammad,F., Prashant,J.R., Balaji,V. and
            Yamuna,B.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-MAR-2021) Clinical Microbiology, Christian Medical
            College, Ida Scudder Road, Vellore, Tamil Nadu 632004, India
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2021
            Assembly Method :: CANU v. v.1.7; UNICYCLER HYBRID v. v.0.4.6
            Assembly Name                     :: GR390
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 175.0x
            Sequencing Technology :: Illumina HiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/10/2024 02:10:42
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,770
            CDSs (total)                      :: 5,645
            Genes (coding)                    :: 5,514
            CDSs (with protein)               :: 5,514
            Genes (RNA)                       :: 125
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 88
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 131
            CDSs (without protein)            :: 131
            Pseudo Genes (ambiguous residues) :: 0 of 131
            Pseudo Genes (frameshifted)       :: 53 of 131
            Pseudo Genes (incomplete)         :: 72 of 131
            Pseudo Genes (internal stop)      :: 15 of 131
            Pseudo Genes (multiple problems)  :: 9 of 131
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP075894.1.
            Bacteria and source DNA available from Wockhardt Research Centre.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1782
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="GR390"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="p4GR390"
                     /geo_loc_name="India"
                     /lat_lon="12.9165 N 79.1325 E"
                     /collection_date="2015"
                     /collected_by="Wockhardt Research Centre"
     gene            311..1300
                     /locus_tag="J4H96_RS28710"
                     /old_locus_tag="J4H96_28710"
     CDS             311..1300
                     /locus_tag="J4H96_RS28710"
                     /old_locus_tag="J4H96_28710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001529700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_023569045.1"
                     /translation="MKNPELQNLTDYSPSDAPWDAHRSVSDDVGGIYLLAAEYERYGAR
                     MASCGGLLRFGWSTLKETGETRLRLREAHFCRVRHCPVCQWRRSLMWQARFYQSLPRIV
                     ADYPDSRWMFLTLTVRNCAIGELGDTLSRMNTAFQRLKDRKEFRPVQGWIRTTEVTRGS
                     DGSAHPHFHTLMMVPPGMLNGKSYVKHARWVELWRECLRVSYDPNVDVRAVKPRKPKDG
                     ESLACATAELVRGAVAETLKYSTKPADMVADPEWFLELTRQTHKRRFVATGGALKDVLK
                     LDQETDADMVIGDDISEGDDDGSRIAFEWKTEVRKYRRSPTKDKTESE"
                     /name="protein rep"
     Typing          complement(1029..1218)
                     /name="ColpVC"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="96.859"
                     /coverage="99.0"
                     /evalue="3.7200000000000003e-85"
ORIGIN
        1 tgggggtgat ttaacgcggt tttcgggtgg caaaattcgc gcgcgttcct tgtatttata
       61 cttaagggat aactctggcg ttaaaaataa gcctcagccc ttgtgccgca agggtttcag
      121 cgtgatttgc ctgaaaatga ctttgaagtt attctgtcgg gagtggtcgc gttaaaagcg
      181 acccccgcaa cgacggccat cgttcggggg cgtgaccacc tgtaggaatt ctattttgcg
      241 acagacaaca caggtgatac ggcaatgata acacgtcaag tgagccatcg cccagtatgg
      301 ggcggtgcgc atgaaaaatc ctgaactcca gaacctcacg gactattccc cctcagatgc
      361 gccctgggac gctcacagaa gcgtttctga cgacgtggga gggatttacc tgcttgcggc
      421 cgaatatgag cgctacgggg cgcgtatggc ctcctgcggc ggtttactgc gtttcgggtg
      481 gtctaccctc aaagaaaccg gagaaacgcg cctgaggctg cgtgaggcgc atttctgccg
      541 tgtccggcac tgtcctgtct gccagtggag gcgctccctg atgtggcaag cccgtttcta
      601 ccagtccctg ccgcgtatcg tggcggatta ccccgattcc cgctggatgt tcctgaccct
      661 gaccgtgcgc aactgtgcga tcggggagct gggcgatacg ctgagccgga tgaacacggc
      721 tttccagcgg ctgaaggatc gcaaagagtt cagaccagtt cagggatgga tccgcaccac
      781 ggaagtcacc cgcggcagtg acggcagcgc acacccgcac ttccacacac tgatgatggt
      841 tccgcctggc atgcttaacg ggaagagtta cgtcaaacat gcgcgctggg ttgagctgtg
      901 gcgggagtgc cttcgggtca gctacgatcc gaatgtcgat gtccgggcag tgaaaccccg
      961 gaagccgaag gacggcgaat cgctggcctg cgcgaccgcc gaactggtgc gcggcgcggt
     1021 ggccgagacc ctgaaatatt ccacgaagcc ggccgacatg gtcgccgatc ctgaatggtt
     1081 cctcgaactg acccgccaga cgcacaagcg ccgctttgtg gcgactggcg gcgcactcaa
     1141 agacgtactg aagctcgatc aggaaaccga cgcagacatg gtgatcgggg atgatatttc
     1201 cgagggcgac gatgacggtt cccgcatcgc gttcgagtgg aaaactgagg tcagaaagta
     1261 ccgtcgctca ccgacgaaag ataaaaccga atcagagtaa cggggtgtcg gggctgcgcc
     1321 ctgaccatga ggactttggg catccgtcac cttggtggcg gtgtaccaaa gtcacatctt
     1381 gtccgattgg ttttactccg atgcaggata gggctaacgc cgcaaagtgc tagcactcga
     1441 ttgcctagtt cggaatccga acttagggtt ttgcgatccg taatacggat tttttttgac
     1501 gggacaagat gtgtttttgg agtaccgcca tcacgatgcg ggtaccaaaa acgatccgtc
     1561 agggctgcgc cccgacaccc tgccaacacc tcacgccgcc agattgaaat ctgccagcgt
     1621 tcgccgttcc tgaaatcgtc aaacgctaaa tcgtggggtc ccgctggctt gccagtgggt
     1681 tccgatttag tgattgacga ccgcgcccgt aaaacactgc cgacaggtgg ttgtgatcac
     1741 gcagtgagcg caaccacctg gtaagcggtt ttgggttttt tt
//
