LOCUS       NZ_CP075660             1586 bp    DNA     linear   CON 27-JUN-2023
DEFINITION  Escherichia coli strain STEC17-183 plasmid pSTEC17_183-h.
ACCESSION   NZ_CP075660
VERSION     NZ_CP075660.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16993368
            Assembly: GCF_016404015.2
KEYWORDS    RefSeq.
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1  (bases 1 to 1586)
  AUTHORS   Nusch-Inderbinnen,M., Stevens,M.J.A., Cernela,N., Muller,A.,
            Biggel,M. and Stephan,R.
  TITLE     Distribution of virulence factors, antimicrobial resistance genes
            and phylogenetic relatedness among Shiga toxin-producing Escherichia
            coli serogroup O91 from human infections
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1586)
  AUTHORS   Nusch-Inderbinnen,M., Stevens,M.J.A., Cernela,N., Muller,A.,
            Biggel,M. and Stephan,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-MAY-2021) Institute for Food Safety and Hygiene,
            University of Zurich, Winterthurerstrasse 272, Zurich, Zurich 8057,
            Switzerland
REFERENCE   3  (bases 1 to 1586)
  AUTHORS   Stevens,M.J.A., Stephan,R. and Nusch-Inderbinnen,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-DEC-2020) Institute for Food Safety and Hygiene,
            University of Zurich, Winterthurerstrasse 272, Zurich, Zurich 8057,
            Switzerland
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: MAY-2021
            Assembly Method                   :: unicycler v. 0.4.9b
            Assembly Name                     :: STEC17-183
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 80.0x
            Sequencing Technology :: Illumina MiniSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 06/27/2023 06:06:25
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,332
            CDSs (total)                      :: 5,212
            Genes (coding)                    :: 4,986
            CDSs (with protein)               :: 4,986
            Genes (RNA)                       :: 120
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 90
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 226
            CDSs (without protein)            :: 226
            Pseudo Genes (ambiguous residues) :: 0 of 226
            Pseudo Genes (frameshifted)       :: 99 of 226
            Pseudo Genes (incomplete)         :: 115 of 226
            Pseudo Genes (internal stop)      :: 53 of 226
            Pseudo Genes (multiple problems)  :: 39 of 226
            Pseudo Genes (short protein)      :: 4 of 226
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP075660.1.
            Bacteria and source DNA available from Institute Food Hygiene and
            Safety, University Zurich.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..1586
                     /organism="Escherichia coli"
                     /mol_type="genomic DNA"
                     /strain="STEC17-183"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:562"
                     /plasmid="pSTEC17_183-h"
                     /geo_loc_name="Switzerland: Zurich"
                     /lat_lon="47.40 N 8.55 E"
                     /collection_date="2017"
                     /collected_by="ILS/NENT"
     gene            <1..267
                     /locus_tag="JFX43_RS26410"
                     /old_locus_tag="JFX43_026410"
     CDS             <1..267
                     /locus_tag="JFX43_RS26410"
                     /old_locus_tag="JFX43_026410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000830439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Exc2 family lipoprotein"
                     /protein_id="WP_215735943.1"
                     /translation="SDTIRMMLPFFQQFRDMGMKDKAAGVSAETAQQRVKEFHSEKFFH
                     SLRSTTTFAGRKYTNSDMPSPKKMKLMADTISAVYLDGYEGRQ"
                     /name="Exc2 family lipoprotein"
ORIGIN
        1 tcagacacca tacgtatgat gctccctttc tttcagcagt tccgggatat ggggatgaaa
       61 gacaaagcag ccggagtatc agcagaaacg gcacagcaac gtgtaaaaga attccactca
      121 gaaaaatttt ttcactcact ccggagcaca acaacctttg ctggcagaaa atacacaaac
      181 agcgatatgc cttcgccgaa aaaaatgaaa ctaatggcag acaccatttc tgcggtttat
      241 ctcgatggat acgagggcag acagtaaggg atttaccata atcccttatt gtacgcaccg
      301 ctgaaacgcg ctcagcgcga ttctggcgca aaaaccgcaa aaagagatgt tttcccccgg
      361 gtaaaccgga aaaatacgtc aggattgttt tcatggcact gcatgactat gcatgaaact
      421 gaatggcgat cggtttgggc gcgcctgatg cccataaggc gcattttcgg acgttttcag
      481 ccctgatgag aagaaatcag acagtagtta cagacgagtc gtgagcgatt caccccggga
      541 gtcatcagcg agtcatccag tatttttcct cgcgactctc tggcgactcg ctttttctga
      601 acaccagaga gacagtgtgt tgagtcatcg ataaatcacc gacgactcgt tgccgaatca
      661 tccagtagtc gccgacaact cgcttttgta taaatctgaa taagaaaata tatttttcaa
      721 accataacaa catgatttaa aaagcaaatc agaaaaaagt tggttttgcg tggggggtgg
      781 gcatccgggg catgagaaca gactcgcgtt tttctggaga aactgcgggg atttttgatt
      841 aaacaatact catcgcagag cggaatttta tgcaacgccg gctgtgcggc acagggattt
      901 ttaatcccca gcatgtcaga gggtgcggat gacggttccc gtctggcgtt ttcatgggcg
      961 ccggttgtca aaaaatacca gcgtgatcgg tcgaaggata agcgcagatt aatcagtgat
     1021 gattgagcgc gaatctgaca acgagtatag cgacacagca acaaaaaaga cgccagaaac
     1081 gcgctcagag gctttgtaac gcgatttttt acatgaggca atggtttcgc tttgaggcgt
     1141 tcagccgtgt tcagggcgcg attctggtac atacctgact gtaatcatcc ctacgaacta
     1201 ctctttgcac cagaaacgcg cagggtgttt tagcgtgtct ccggcgtgat gtcgagttgt
     1261 gcggtaatga gtgagcgaaa aaaatcccct ggattacagg gggaacccat tatcagactt
     1321 tgaagtttat ttgttatttg atggagtgag ctcgaatccc agagatgacg ttcaggtggc
     1381 aaggaaacgc gctcagacgc tttctaacgc acttttttgc atctggcaat gtttcattat
     1441 gttttggtgg gttcaggctg ttagagacgt tttgagcgcg tttctggcgc ttgctgctac
     1501 tgccaaacca tccccatggc cagttgatgc cagaaacgcg caggagtttt gtagcgcgtc
     1561 tccggtccct gatcaatgaa ttcccg
//
