LOCUS       NZ_CP075610             2056 bp    DNA     circular CON 13-SEP-2023
DEFINITION  Enterococcus faecalis strain 1207/14 plasmid p1207_6, complete
            sequence.
ACCESSION   NZ_CP075610
VERSION     NZ_CP075610.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN19292310
            Assembly: GCF_018986755.2
KEYWORDS    RefSeq.
SOURCE      Enterococcus faecalis
  ORGANISM  Enterococcus faecalis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Enterococcaceae;
            Enterococcus.
REFERENCE   1  (bases 1 to 2056)
  AUTHORS   Wardal,E., Sadowy,E., Zabicka,D. and Hryniewicz,W.
  TITLE     VanA Enterococcus faecalis in Poland
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2056)
  AUTHORS   Wardal,E., Sadowy,E., Zabicka,D. and Hryniewicz,W.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-MAY-2021) Molecular Microbiology, National Medicines
            Institute, Chelmska 30/34, Warsaw 00-725, Poland
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.7
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 400.0x
            Sequencing Technology :: Oxford Nanopore MinION; Illumina MiSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 09/13/2023 03:24:38
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,539
            CDSs (total)                      :: 3,453
            Genes (coding)                    :: 3,367
            CDSs (with protein)               :: 3,367
            Genes (RNA)                       :: 86
            rRNAs                             :: 4, 4, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 4, 4 (5S, 16S, 23S)
            tRNAs                             :: 70
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 86
            CDSs (without protein)            :: 86
            Pseudo Genes (ambiguous residues) :: 0 of 86
            Pseudo Genes (frameshifted)       :: 39 of 86
            Pseudo Genes (incomplete)         :: 38 of 86
            Pseudo Genes (internal stop)      :: 22 of 86
            Pseudo Genes (multiple problems)  :: 12 of 86
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP075610.1.
            Bacteria and source DNA available from National Medicines
            Institute, Poland.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2056
                     /organism="Enterococcus faecalis"
                     /mol_type="genomic DNA"
                     /strain="1207/14"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:1351"
                     /plasmid="p1207_6"
                     /geo_loc_name="Poland: Ostrow Mazowiecka"
                     /lat_lon="52.8071 N 21.8796 E"
                     /collection_date="2014"
                     /collected_by="National Medicines Institute"
     gene            546..701
                     /locus_tag="KKP64_RS17475"
                     /old_locus_tag="KKP64_17485"
     CDS             546..701
                     /locus_tag="KKP64_RS17475"
                     /old_locus_tag="KKP64_17485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002299939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CopG family transcriptional regulator"
                     /protein_id="WP_002299939.1"
                     /translation="MISNEKKRVVVTLTKEVADNLDKIAKQMGLSKSGLITIWVNANGK
                     ENEQKK"
                     /name="CopG family transcriptional regulator"
     gene            768..1370
                     /locus_tag="KKP64_RS17480"
                     /old_locus_tag="KKP64_17490"
     CDS             768..1370
                     /locus_tag="KKP64_RS17480"
                     /old_locus_tag="KKP64_17490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002323513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication protein"
                     /protein_id="WP_010729575.1"
                     /translation="MTSRKTKDERTRNWTFVVYPESAPENWREFLDELHVPWVESPLHD
                     KDVNPDGELKKPHWHVLIMFSGKKTYDQIREITQKIRSPNPQKCANAKGMVRYFAHMDN
                     PEKFQYAKSDIIAHGGAEIASYLSVTSAERYELIREMMSFVDSKNITEIKDLIDYAMSE
                     RFDDWFPLLCDNSAYIIGQYIKSNRHGGSVNSKINKG"
                     /name="replication protein"
     gene            complement(1506..1763)
                     /locus_tag="KKP64_RS17485"
                     /old_locus_tag="KKP64_17495"
     CDS             complement(1506..1763)
                     /locus_tag="KKP64_RS17485"
                     /old_locus_tag="KKP64_17495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002377879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_002377879.1"
                     /translation="MPKETTINVEQLEKLLESYSNDFIELTGGKVEETTDLFDLLLTNI
                     LELNSEEQKEHKGKLIAPSYRKAAKSAVPTGFLTKQPYIF"
                     /name="hypothetical protein"
     gene            complement(1764..1985)
                     /locus_tag="KKP64_RS17490"
                     /old_locus_tag="KKP64_17500"
     CDS             complement(1764..1985)
                     /locus_tag="KKP64_RS17490"
                     /old_locus_tag="KKP64_17500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002299940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_002299940.1"
                     /translation="MRVIKSEKFTLAEIMTTSELAQELDYNQAYVLRLAKEHLTEGKEY
                     RSAGRRNYLFSPEALKKLEKVITTKEGE"
                     /name="hypothetical protein"
     Typing          complement(1429..1604)
                     /name="MOBV"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="2.01e-87"
     Typing          769..1298
                     /name="rep_cluster_2351"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="99.812"
                     /coverage="96.0"
                     /evalue="0.0"
ORIGIN
        1 taagttttct gtgttgtggt caattttata ttatcgaaat gactagtaga aaaaatcaat
       61 gctctaaaaa gggtctattt tgcgttttaa gcgatttagc gtctatttcg tttagttatc
      121 ggcgcaatcg ttaaaacacg taagagaagc gagaatggag cctgtaaggc gactggtagc
      181 gaaacggtcg tgttagattg caaaagccga tagctgaacg aaatagtaag cgtggcgcct
      241 gcatatattt cggtagaagg aggtcggggt tcggggcgga gccctgaggt ttgttttttg
      301 gttttggtgt ttatgaattg ggcggaggag ggggggacta cgacaccccc cttattggtc
      361 attggtcatt ggtcgatagc tgtttagcct tactctccca agggtttcag cgtttttttt
      421 tgacaaaatc agtaatgcca agggtttaag gcctattatt cgctaattag tatctaaact
      481 gttgcacctt agttactttt ttgttactat ggtttttaag aaaaagtcgt tggaggatac
      541 gaattatgat cagtaatgaa aaaaagagag tcgttgtaac gcttactaag gaagtggcag
      601 ataatcttga taaaattgcg aaacaaatgg gtcttagtaa gtctggtctt attacaattt
      661 gggttaatgc taacggaaag gaaaatgagc aaaaaaaata gcaaaagcat tagtgttggc
      721 gcactgcttt tgctgttaga ctgttgttca attaaggtga ttatagcatg acgagtagaa
      781 aaactaaaga tgaacgcaca aggaattgga cgtttgtagt ctatcctgaa tcggctcctg
      841 aaaattggag ggagttttta gatgagttac atgttccttg ggttgagagt ccacttcatg
      901 ataaagatgt gaatcctgac ggtgaattga aaaagcctca ttggcatgtt ttgataatgt
      961 ttagcggtaa aaagacgtat gatcaaatac gtgagataac tcaaaagatt cggtctccaa
     1021 acccgcaaaa atgtgctaat gcaaaaggta tggtgcgata ttttgctcat atggataatc
     1081 cagaaaaatt tcaatatgct aaaagtgata ttatcgctca tggtggtgca gaaattgcta
     1141 gttatttgtc agtaacgagt gcagaacgat atgagttgat tagagagatg atgtcgtttg
     1201 ttgattctaa gaatatcact gaaatcaaag atttaattga ctatgcaatg tcagaaagat
     1261 ttgatgattg gtttccgctt ctttgtgata attcagctta tattatcggg caatatataa
     1321 aatcgaatcg tcatggtgga agtgtaaatt caaaaataaa taaaggataa gagctgttaa
     1381 tttcagctct ttttttgtgc gtgaaagtct tagtcactat gaccaaaact acggacgaaa
     1441 ctatgaccaa aagtaggtac tatattatga ccgaaaatag gtccaaaatg gatttttttg
     1501 tgatatcaaa aaatataagg ttgttttgta agaaaaccag ttggcacagc cgacttagcc
     1561 gccttcctgt aggaaggtgc tatcagtttt cccttatgct ctttttgttc ttcagagttt
     1621 aattccagaa tatttgtgag aagtaggtca aagaggtcgg tggtttcttc gacttttccg
     1681 ccggtcaatt cgataaaatc attggaatat gattctagca atttttctag ttgttcaacg
     1741 ttgatagttg tttctttagg catttactca ccttctttgg tggttatgac tttttctagt
     1801 tttttaaggg cttctgggct gaaaagatag tttcttctac cggcagagcg atattctttt
     1861 ccttcagtca gatgttcttt cgctaagcgc aaaacgtaag cttggttgta atcaagttct
     1921 tgtgcaagtt cgctggtcgt cataatttcg gccaaagtga atttttctga ttttatcact
     1981 ctcatttatg ctccttccat ttaacgtccg tctatattac gtgagtacgt cggacttacg
     2041 acataagctt ataata
//
