LOCUS       NZ_CP075594             3056 bp    DNA     circular CON 22-NOV-2023
DEFINITION  Klebsiella pneumoniae strain ST17 plasmid pKp2177_3, complete
            sequence.
ACCESSION   NZ_CP075594
VERSION     NZ_CP075594.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA8550523
            Assembly: GCF_025920785.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 3056)
  AUTHORS   Hetland,M.A.K., Hawkey,J., Bernhoff,E., Bakksjo,R.-J., Kaspersen,H.,
            Rettedal,S.I., Sundsfjord,A., Holt,K.E. and Lohr,I.H.
  TITLE     Within-host and global evolutionary dynamics of Klebsiella
            pneumoniae ST17
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3056)
  AUTHORS   Hetland,M.A.K., Hawkey,J., Bernhoff,E., Bakksjo,R.-J., Kaspersen,H.,
            Rettedal,S.I., Sundsfjord,A., Holt,K.E. and Lohr,I.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2021) Department of Medical Microbiology,
            Stavanger University Hospital, Gerd Ragna Bloch Thorsens gate 8,
            Stavanger 4011, Norway
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: SPAdes v. 3.13.0
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 50.0x
            Sequencing Technology             :: Illumina MiSeq; Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 11/22/2023 06:49:29
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,585
            CDSs (total)                      :: 5,457
            Genes (coding)                    :: 5,328
            CDSs (with protein)               :: 5,328
            Genes (RNA)                       :: 128
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 17
            Pseudo Genes (total)              :: 129
            CDSs (without protein)            :: 129
            Pseudo Genes (ambiguous residues) :: 0 of 129
            Pseudo Genes (frameshifted)       :: 54 of 129
            Pseudo Genes (incomplete)         :: 75 of 129
            Pseudo Genes (internal stop)      :: 13 of 129
            Pseudo Genes (multiple problems)  :: 12 of 129
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP075594.1.
            Bacteria and source DNA available from Stavanger University
            Hospital.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3056
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="ST17"
                     /isolation_source="Breast milk"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="pKp2177_3"
                     /geo_loc_name="Norway"
                     /collection_date="2008-11-26"
                     /genotype="ST17"
     gene            447..1331
                     /locus_tag="KJE29_RS27860"
                     /old_locus_tag="KJE29_27755"
     CDS             447..1331
                     /locus_tag="KJE29_RS27860"
                     /old_locus_tag="KJE29_27755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001517860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_117259896.1"
                     /translation="MSNAALNLFNERLPHKPYFSDDLHFGVRIADKERAILAKYIQFNQ
                     PHAMFWLGFDVDRAGAAIDWSDRNAPAPTLTITNPENGHAHLLYALKTSIRTAPDGKMK
                     PLRYAAAVENALRKKLEADTGYSGLICKNPNHSHWKIAVWQPELYTLDWLADYLDLTTA
                     NDKEIVADYGLGRNCTLFDKTRRWAYRAIRQGWPEYDQWLQACYERASAYNLQFALPLD
                     ENEVMGIAKSIAKWTECKFSKDLFLEYVKNTHSSEIQSKRGKMSKGGGRKSLGEPWVEL
                     GVSRATYFRHRKK"
                     /name="replication initiation protein"
     gene            1334..1969
                     /locus_tag="KJE29_RS27865"
                     /old_locus_tag="KJE29_27760"
     CDS             1334..1969
                     /locus_tag="KJE29_RS27865"
                     /old_locus_tag="KJE29_27760"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_135726274.1"
                     /translation="MKNWLIPLIAWIVIFMGLKLILGGGCNDGWGSSSIGRMGACSHHG
                     GVNHTPGFIAFFISTAIAAYLFFKIDEMDTRKIKNAHSIQASYFEMESTSAPFNPCYSL
                     RLSSKEINFTHSFSWDGDKTVINIPSSPEELKYILSLSEKIKKDIENFREENTTFGCDG
                     ESVSIKTFNGFQEMSFVTPMLFISFESISPATLEMMTYLRNRLGFDLH"
                     /name="hypothetical protein"
     gene            2331..2522
                     /locus_tag="KJE29_RS27870"
                     /old_locus_tag="KJE29_27765"
     CDS             2331..2522
                     /locus_tag="KJE29_RS27870"
                     /old_locus_tag="KJE29_27765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001041614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_001041614.1"
                     /translation="MNKQQKTAVNMAKFIQDQSLLLLDRLNELDLDHEADFCEKLHEDA
                     ERLYRSLSARLNEQQDGA"
                     /name="Rop family plasmid primer RNA-binding protein"
ORIGIN
        1 gccggcaacg cctcacggcc acgcaataaa ttgcgcatcc gttcaccgtt atcggggtgg
       61 ttcgtggtgg ctttcagggc gttcatcgga ttttagccgc taaaatcccg gccaggtatg
      121 tccgtgcata gccatgcagt cgcgccagaa tcatcagggg cgttttttct cgatatgggc
      181 acagaaaggt gtgtgtttca ggccggaggc ctcagaaacg ccctcagagg ctctgaggcg
      241 gtgcacgcaa cggatgttat ggtaaatcgt tgtgggatcg acagacgtta ccggacggtg
      301 taacgttaga gccagaaaaa acaaagcccc ggaaatcatg tcatatcttg gcggatcgca
      361 tgataaccag ggctaggtcg aaaccttgaa ggaatcttag cacatgaacc gtgccagaca
      421 acagcccgcc ataagcgcag ggcgcattga gtaacgctgc acttaatctt ttcaacgagc
      481 gcttgccgca caagccgtac ttttcggacg atctgcactt tggtgtacgc attgccgata
      541 aggaacgcgc catcttggcg aaatacattc agttcaatca gcctcatgcc atgttctggc
      601 tgggattcga tgtcgatcgc gccggtgccg ccatagactg gagcgaccgc aacgcgcccg
      661 cgcccacgct gaccatcacc aatcccgaaa acggacacgc gcacctgctc tatgcgctga
      721 aaacttcgat ccgtactgcg ccagacggaa aaatgaagcc gctgcgctac gccgccgctg
      781 tagagaacgc gctacgtaaa aaattagagg ccgatacggg ttattcagga ctaatctgca
      841 aaaacccgaa ccatagccat tggaaaattg ccgtgtggca gccagaactg tacacactgg
      901 actggctagc tgactatctc gacttgacca ccgcgaacga taaagaaatc gttgctgatt
      961 acggcttagg ccgtaactgc actttgttcg ataaaacccg ccgatgggca taccgagcta
     1021 ttcgtcaggg ctggcctgaa tatgaccagt ggctgcaagc ctgctatgaa cgtgccagcg
     1081 cttacaacct gcagtttgca ttacctctgg atgaaaatga ggttatggga atagcaaaaa
     1141 gcattgctaa atggactgag tgtaaattca gcaaagattt gtttttggaa tacgtaaaaa
     1201 atacgcattc ttcagaaata caatcaaaaa gaggcaaaat gagtaaaggt ggaggtagaa
     1261 agtctcttgg cgaaccgtgg gttgaattag gtgtgagtag agctacttac tttaggcatc
     1321 ggaaaaaatg agattgaaaa actggcttat cccacttatt gcatggattg ttatttttat
     1381 ggggttaaag ttaattttag gtggcgggtg caatgatgga tggggttcgt cctcaatagg
     1441 aaggatgggg gcctgctctc atcatggcgg tgttaaccat accccaggct tcattgcttt
     1501 tttcatttcc acggccattg ccgcctatct tttttttaaa atagatgaaa tggatacaag
     1561 gaaaataaaa aacgcccata gcattcaagc aagttatttt gaaatggagt ctactagcgc
     1621 tcctttcaat ccttgctatt cgttaaggtt aagttcaaag gaaatcaatt tcactcacag
     1681 ttttagttgg gatggtgaca agactgttat taatatccca tcctcccccg aggagttaaa
     1741 atacattctc tctttatcag agaaaataaa aaaagacatt gaaaatttta gagaagaaaa
     1801 cactactttt ggatgtgacg gggagtcagt gtccattaaa acttttaatg gcttccaaga
     1861 gatgagcttt gttaccccaa tgctattcat tagctttgaa agtatatctc ccgcaacgct
     1921 tgaaatgatg acttacctaa ggaataggtt aggttttgac cttcattgaa ggtcatctta
     1981 gctttagtga gactaaacaa cctatatcag ataacagccc tctctagaag agggctgttt
     2041 ttttgccgcc agcatagaat ctgacatact gcacctatct tcagccagta cacacggcgt
     2101 cccctctggc gagggtccac cgtgactggt tcaggggatt gcatcccccg aaacccccgt
     2161 gagaatggtg cgaatctttt gcgaattatt cccacattca ctgcgaatat tctcaccgtg
     2221 attagccggt aacgctcgcc gcagtctcat gaccgaacgg agtgagcgaa tgagcgagga
     2281 agcggaaaac aatcagaacg tacagtaagc actttcgcgc cggggccttc atgaacaaac
     2341 aacaaaagac agccgttaac atggctaaat tcatccagga tcagtccctg cttcttctgg
     2401 acaggcttaa tgagctggat ctggatcatg aggctgattt ctgcgagaaa ctccatgagg
     2461 atgcggaacg cctttaccga agcctgtcag cgcgcctgaa tgagcagcag gacggtgcgt
     2521 aatggctccg ttgtgggtat taccggagta ataccggcat cgccttaatt ttcattgttt
     2581 tggcgcttaa tattattacc ccggtaatac ccagaatccc tttatttttt cttttttatt
     2641 tatttttcat gaagttgcga tgaaaatcgc agctgcgtta ggtgtatgtc attttttagt
     2701 atataaaacg accactcccg agtgctggcg ccgcaggtta aggatgattc tggctaaaaa
     2761 gcgtcctttt ccgggaaagg gtcatgctcg tatgacccta tgggttcagc gactacacat
     2821 aaactacaaa attgcatctg cttttacccc agaacgcggg tgtacaacag aattacatca
     2881 aaagtacatc aaaattacat cacttttacg tcagatcgcg ggtgtacaac agaattacat
     2941 caaaagtaca tcacttttac atcattttta cgtcagatct gacctctgaa ctattcgtac
     3001 atccgccccc tcttcctggg cctcctgcac gtgctgaaaa tggtttttcc ggctgt
//
