LOCUS       NZ_CP075284             1896 bp    DNA     circular CON 05-JAN-2024
DEFINITION  Klebsiella pneumoniae strain YTF44-1 plasmid pYTF44-1-1896bp,
            complete sequence.
ACCESSION   NZ_CP075284
VERSION     NZ_CP075284.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN19107302
            Assembly: GCF_018449065.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 1896)
  AUTHORS   Peng,K. and Li,R.
  TITLE     Plasmids shapes the current prevalence of tmexCD1-toprJ1 among
            Klebsiella pneumoniae in food production chain
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1896)
  AUTHORS   Peng,K. and Li,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-MAY-2021) College of Veterinary Medicine, Yangzhou
            University, No. 567, wenchang middle road, hanjiang district, yangz,
            yangzhou, jiangsu 225000, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. v0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100.0x
            Sequencing Technology :: Oxford Nanopore MiniION; Illumina HiSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/05/2024 12:29:59
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,717
            CDSs (total)                      :: 5,592
            Genes (coding)                    :: 5,456
            CDSs (with protein)               :: 5,456
            Genes (RNA)                       :: 125
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 88
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 136
            CDSs (without protein)            :: 136
            Pseudo Genes (ambiguous residues) :: 0 of 136
            Pseudo Genes (frameshifted)       :: 53 of 136
            Pseudo Genes (incomplete)         :: 82 of 136
            Pseudo Genes (internal stop)      :: 17 of 136
            Pseudo Genes (multiple problems)  :: 15 of 136
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP075284.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1896
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="YTF44-1"
                     /isolation_source="a feces sample of swine origin"
                     /db_xref="taxon:573"
                     /plasmid="pYTF44-1-1896bp"
                     /geo_loc_name="China: Yangzhou, jiangsu province"
                     /lat_lon="32.40 N 119.40 E"
                     /collection_date="2020-07"
                     /collected_by="College of Veterinary Medicine, Yangzhou
                     University"
     gene            <2..1117
                     /locus_tag="KI725_RS00005"
                     /old_locus_tag="KI725_00005"
                     /pseudo=""
     CDS             <2..1117
                     /locus_tag="KI725_RS00005"
                     /old_locus_tag="KI725_00005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018387990.1"
                     /GO_function="GO:0008863 - formate dehydrogenase (NAD+)
                     activity [Evidence IEA]; GO:0051287 - NAD binding [Evidence
                     IEA]"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent formate dehydrogenase"
                     /name="NAD-dependent formate dehydrogenase"
     gene            complement(1420..>1896)
                     /locus_tag="KI725_RS00010"
                     /old_locus_tag="KI725_00010"
                     /pseudo=""
     CDS             complement(1420..>1896)
                     /locus_tag="KI725_RS00010"
                     /old_locus_tag="KI725_00010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011152976.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="CatA-like O-acetyltransferase"
                     /name="CatA-like O-acetyltransferase"
     ARG             complement(1421..1896)
                     /name="catA1"
                     /gene="catA1"
                     /gene_name="chloramphenicol acetyltransferase (CAT)"
                     /tool="rgi"
                     /drug_class="phenicol antibiotic"
                     /identity="100.0"
                     /coverage="72.15"
ORIGIN
        1 ttacccgggt ggccagaccc tgccgacccc gaaagcgatt gacttcaccc cgggtcaact
       61 gctgggcagc gttagcggcg agctgggtct gcgtaagtac ctggaaagca acggtcacac
      121 cctggtggtt accagcgaca aagatggccc ggatagcgtg ttcgagcgtg aactggttga
      181 cgcggatgtg gttatcagcc aaccgttttg gccggcgtat ctgaccccgg agcgtattgc
      241 gaaggcgaaa aacctgaagc tggcgctgac cgcgggtatt ggcagcgacc atgtggacct
      301 gcaaagcgcg attgaccgta acgtgaccgt tgcggaagtg acctactgca acagcatcag
      361 cgttgcggaa cacgtggtta tgatgattct gagcctggtg cgtaactatc tgccgagcca
      421 tgagtgggcg cgtaagggtg gctggaacat cgcggactgc gttagccacg cgtacgatct
      481 ggaagcgatg catgtgggca ccgttgcggc gggtcgtatt ggtctggcgg tgctgcgtcg
      541 tctggcgccg tttgacgttc acctgcacta caccgatcgt caccgtctgc cggagagcgt
      601 ggagaaagaa ctgaacctga cctggcacgc gacccgtgaa gacatgtatc cggtttgcga
      661 tgtggttacc ctgaactgcc cgctgcaccc ggagaccgaa cacatgatca acgatgagac
      721 cctgaagctg ttcaaacgtg gtgcgtacat tgtgaacacc gcgcgtggca agctgtgcga
      781 ccgtgatgcg gttgcgcgtg cgctggaaag cggtcgtctg gcgggttatg cgggtgatgt
      841 ttggtttccg caaccggcgc cgaaagatca cccgtggcgt accatgccgt acaacggtat
      901 gaccccgcac attagcggca ccaccctgac cgcgcaagcg cgttatgcgg cgggcacccg
      961 tgagatcctg gagtgcttct ttgagggccg tccgatccgt gacgaatatc tgattgttca
     1021 gggtggcgcg ctggcgggca ccggtgcgca cagctatagc aaaggcaacg cgaccggtgg
     1081 cagcgaggaa gcggcgaaat tcaagaaagc ggtttaactc gagcaccacc accaccacca
     1141 ctgagatccg gctgctaaca aagcccgaaa ggaagctgag ttggctgctg ccaccgctga
     1201 gcaataacta gcataacccc ttggggcctc taaacgggtc ttgaggggtt ttttgaccgg
     1261 taaaccagca atagacataa gcggctattt aacgaccctg ccctgaaccg acgaccgggt
     1321 cgaatttgct ttcgaatttc tgccattcat ccgcttatta tcacttattc aggcgtagca
     1381 accaggcgtt taagggcacc aataactgcc ttaaaaaaat tacgccccgc cctgccactc
     1441 atcgcagtac tgttgtaatt cattaagcat tctgccgaca tggaagccat cacaaacggc
     1501 atgatgaacc tgaatcgcca gcggcatcag caccttgtcg ccttgcgtat aatatttgcc
     1561 catggtgaaa acgggggcga agaagttgtc catattggcc acgtttaaat caaaactggt
     1621 gaaactcacc cagggattgg ctgagacgaa aaacatattc tcaataaacc ctttagggaa
     1681 ataggccagg ttttcaccgt aacacgccac atcttgcgaa tatatgtgta gaaactgccg
     1741 gaaatcgtcg tggtattcac tccagagcga tgaaaacgtt tcagtttgct catggaaaac
     1801 ggtgtaacaa gggtgaacac tatcccatat caccagctca ccgtctttca ttgccatacg
     1861 gaattccgga tgagcattca tcaggcgggc aagaat
//
