LOCUS       NZ_CP074194             1443 bp    DNA     circular CON 13-MAY-2024
DEFINITION  Raoultella planticola strain JBIWA001 plasmid pJBIWA001_12, complete
            sequence.
ACCESSION   NZ_CP074194
VERSION     NZ_CP074194.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN18916998
            Assembly: GCF_019968885.1
KEYWORDS    RefSeq.
SOURCE      Raoultella planticola
  ORGANISM  Raoultella planticola
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Raoultella.
REFERENCE   1  (bases 1 to 1443)
  AUTHORS   Gomi,R., Matsumura,Y., Tanaka,M., Ihara,M., Sugie,Y., Matsuda,T. and
            Yamamoto,M.
  TITLE     Emergence of rare carbapenemases (FRI, GES-5, IMI, SFC and SFH-1) in
            Enterobacterales isolated from surface waters in Japan
  JOURNAL   J Antimicrob Chemother 77 (5), 1237-1246 (2022)
   PUBMED   35137119
REFERENCE   2  (bases 1 to 1443)
  AUTHORS   Gomi,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-MAY-2021) Department of Environmental Engineering,
            Kyoto University, KyotoDaigakuKatsura, Nishikyo-ku, Kyoto-city
            615-8540, Japan
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 135x
            Sequencing Technology             :: DNBSEQ; Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_019968885.1-RS_2024_05_13
            Annotation Date                   :: 05/13/2024 04:14:11
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,989
            CDSs (total)                      :: 5,866
            Genes (coding)                    :: 5,727
            CDSs (with protein)               :: 5,727
            Genes (RNA)                       :: 123
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 85
            ncRNAs                            :: 13
            Pseudo Genes (total)              :: 139
            CDSs (without protein)            :: 139
            Pseudo Genes (ambiguous residues) :: 0 of 139
            Pseudo Genes (frameshifted)       :: 46 of 139
            Pseudo Genes (incomplete)         :: 109 of 139
            Pseudo Genes (internal stop)      :: 34 of 139
            Pseudo Genes (multiple problems)  :: 44 of 139
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP074194.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1443
                     /organism="Raoultella planticola"
                     /mol_type="genomic DNA"
                     /strain="JBIWA001"
                     /isolation_source="lake water"
                     /db_xref="taxon:575"
                     /plasmid="pJBIWA001_12"
                     /geo_loc_name="Japan: Shiga"
                     /lat_lon="35 N 136 E"
                     /collection_date="2020-02-05"
                     /collected_by="Kyoto University"
     gene            complement(217..711)
                     /locus_tag="KGP19_RS29930"
                     /old_locus_tag="KGP19_29790"
     CDS             complement(217..711)
                     /locus_tag="KGP19_RS29930"
                     /old_locus_tag="KGP19_29790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000469298.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_016240432.1"
                     /translation="MFVNPELHGKKRQEQLDENVRKATREHEEAKKNSRFTQVSPKGWE
                     RVRELLTDKQGVAALRLYSFLAEHIDPSCGAVVADQQFLADKMGVNRSTIIRWLNYLES
                     KNALVRIPVAGKVCAYALDPHEVWKGYNTSKDYSAFVTKTLVNNDGDIKRRIMSMFSSN
                     E"
                     /name="helix-turn-helix domain-containing protein"
ORIGIN
        1 tacgcatatt attatcacaa cagccttatt tatttttatt ttcataaagg ctccatttta
       61 ttattatgcc gaaatcgacg ataaatatat aatatatttt taatataaaa agcaaatata
      121 ttttgcgata ttatcaaaat atatttgctg agatttttta ttttattgtt ttacattaaa
      181 aaacaataac ttatatattt aagtatcttg ctttggctat tcattggaag aaaacatcga
      241 catgattctt ctcttaatgt cgccatcatt gttaactaaa gtctttgtca caaatgctga
      301 gtagtctttt gatgtgttat atcccttcca cacttcatga ggatctaatg catatgcgca
      361 gacctttcct gcaacgggga tcctaaccaa tgcgtttttt gactctaagt aatttagcca
      421 ccttattatt gtcgatctat tcacacccat tttatcggca agaaattgct gatctgcaac
      481 aactgctcca catgaaggat cgatatgttc tgctaaaaat gagtagagtc gtagcgccgc
      541 taccccttgt ttgtcagtga ggagctctct aacacgttcc cagcctttag gtgatacctg
      601 ggtgaacctg gagttctttt tcgcttcctc atgctctcta gtggcttttc tgacgttctc
      661 atcaagttgc tcttgccgtt tttttccgtg taactctgga ttcacaaaca tgacattttc
      721 gcctttggtt ttgatggtac attgctgttc caaaaatgct acatcttgtt gcatttacgc
      781 gtcaaggtgt tccgtattgt tgcacgcagg gtgcaacaac gttgttgcac cctgcgtgca
      841 acaggtcaaa ggtatgtttc ccagcaaaaa caataagtta ttatttttgc tatatctaat
      901 ctttaaagac ctaacagcaa acatcaaaag ttaggtacct cccaccttta atcgggcatt
      961 tttgagggtc aaggttcacg taagtgaccg cggagcggct cgaccttgat gctcaaaaat
     1021 gcctaacaag cttcgcggag gtggttgtga tcacgcagtg agcgcaacca cctgccagac
     1081 gcatttgatt ttagccattg cgggttccgg gcgcagcgcc ggaccagtca cgtagcgcta
     1141 gcggagtgta tactggctta ggtgtgtaag cagaaaatgt ggggtgttgg ttatcttgcg
     1201 cctccttcgt tcattcgctc actacgttcg gtcatgaact gcggcaggca ctcttggctc
     1261 ttaaccttaa tggtttcgat accaatcgct gatactgtca acagcgagct actcgagttt
     1321 atttacgtcg acagcgtatt gttagatgat cgtgtgcaga tgttttgtta gattatttat
     1381 ttgtaattat aaaaaaacag ccattcggct gttttcttta ctgctatcgc catgtaataa
     1441 aaa
//
