LOCUS       NZ_CP074193             1610 bp    DNA     circular CON 13-MAY-2024
DEFINITION  Raoultella planticola strain JBIWA001 plasmid pJBIWA001_11, complete
            sequence.
ACCESSION   NZ_CP074193
VERSION     NZ_CP074193.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN18916998
            Assembly: GCF_019968885.1
KEYWORDS    RefSeq.
SOURCE      Raoultella planticola
  ORGANISM  Raoultella planticola
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Raoultella.
REFERENCE   1  (bases 1 to 1610)
  AUTHORS   Gomi,R., Matsumura,Y., Tanaka,M., Ihara,M., Sugie,Y., Matsuda,T. and
            Yamamoto,M.
  TITLE     Emergence of rare carbapenemases (FRI, GES-5, IMI, SFC and SFH-1) in
            Enterobacterales isolated from surface waters in Japan
  JOURNAL   J Antimicrob Chemother 77 (5), 1237-1246 (2022)
   PUBMED   35137119
REFERENCE   2  (bases 1 to 1610)
  AUTHORS   Gomi,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-MAY-2021) Department of Environmental Engineering,
            Kyoto University, KyotoDaigakuKatsura, Nishikyo-ku, Kyoto-city
            615-8540, Japan
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 135x
            Sequencing Technology             :: DNBSEQ; Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_019968885.1-RS_2024_05_13
            Annotation Date                   :: 05/13/2024 04:14:11
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,989
            CDSs (total)                      :: 5,866
            Genes (coding)                    :: 5,727
            CDSs (with protein)               :: 5,727
            Genes (RNA)                       :: 123
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 85
            ncRNAs                            :: 13
            Pseudo Genes (total)              :: 139
            CDSs (without protein)            :: 139
            Pseudo Genes (ambiguous residues) :: 0 of 139
            Pseudo Genes (frameshifted)       :: 46 of 139
            Pseudo Genes (incomplete)         :: 109 of 139
            Pseudo Genes (internal stop)      :: 34 of 139
            Pseudo Genes (multiple problems)  :: 44 of 139
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP074193.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1610
                     /organism="Raoultella planticola"
                     /mol_type="genomic DNA"
                     /strain="JBIWA001"
                     /isolation_source="lake water"
                     /db_xref="taxon:575"
                     /plasmid="pJBIWA001_11"
                     /geo_loc_name="Japan: Shiga"
                     /lat_lon="35 N 136 E"
                     /collection_date="2020-02-05"
                     /collected_by="Kyoto University"
     gene            complement(join(1402..1610,1..301))
                     /locus_tag="KGP19_RS29925"
                     /old_locus_tag="KGP19_29785"
     CDS             complement(join(1402..1610,1..301))
                     /locus_tag="KGP19_RS29925"
                     /old_locus_tag="KGP19_29785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016243913.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_069377321.1"
                     /translation="MIVASEHQAKLRQKEIQEIDRKASKEHEEAKKNSNFTQTYPKGWQ
                     RIRELLRDKQGAAAIGLYSFFAEHIDPTCGAVVCDQQFLANQMGVSTRTIRRWLDYLEE
                     KGALVRIPVAGKVCAYALDPHEVWKGYNTSKDYSAFVTKTLVNKDGEIKRRIMAMFSVE
                     ESGQEQ"
                     /name="helix-turn-helix domain-containing protein"
ORIGIN
        1 aatctaacca acgacgaatt gtccgagtag aaacacccat ctgattagct aaaaactgct
       61 ggtcgcagac cacggcaccg catgtaggat ctatatgttc agcgaaaaat gagtaaagac
      121 ctatagcggc agcaccctgt ttgtccctca aaagctctct aatgcgttgc cagccctttg
      181 ggtatgtctg agtgaagtta ctgttcttct tcgcctcctc gtgctcttta gatgccttcc
      241 tgtcgatttc ctgtatttct ttctgcctga gctttgcttg gtgttctgaa gctacgatca
      301 tctttatccc tcggtgtctt ttttatagga catttttgtc ccatcatagg acttgtggtg
      361 tcctatgtcc agccacgtgc ggacacagct ggtgtccgca cgtgcggaca cagctggtgt
      421 cctatcagaa aaaatcaaaa ctataaaaat caataactta ttatttatct ctattctctt
      481 ctatgaaaac caacaaacaa caccaaagtt caaggtagct ccctccctcc ggtcgggcat
      541 tttgagggtc atggttcgcc ataggcgacc gcgttagcgg cttgaccttg acgatcaaaa
      601 tgcccattta accttgtatc tggtgatggc tcgcatagtg agccatcacc atgactgacg
      661 gttttcaggg gtttcggggc gaagccctga accagtcact ccgctagcgg agtgtatact
      721 ggctatgttg tatttagcct cagagcgtaa gaagaacctg caagttctga tgatctggtg
      781 cctcctcgct cactcggtcg ctacgctcct gccgtgaggc tgcggcgggc actactgatt
      841 cactgatgct ggcttgatac cgtcaatgac gagcttgcga gtttatttat cattgacggc
      901 gcactgttgg gtaaactacc tctggtgcaa tgtggcgcgt ggcgccgcct tgcacttggt
      961 aagcggtttt tgttttttta ttatattaac cggcgccaga tagtgcgtct gtggtttttc
     1021 attattacta tcaccgcgta acaaagctac acatattaat attaagcata atctgtttat
     1081 ttttattttt atattcattt tattctccta tttttattat tattttattg ttgtaatgga
     1141 atgtatatat ttaaaaaata ggaaaatcaa atatatttaa tgaaaatata taaatatatt
     1201 ttatcgtagc ttgtttttta ttttaagtgt ttgtttttga ttgttttgtt tattttataa
     1261 attaagatac ctttgccggg tggtggtata taatcgctcc ctactattta aatggcggat
     1321 tatcatgggg atagttcgct gtggcgaacc atcccccttt ccgagggtgg tggtcgttcc
     1381 gatccgtcaa gagtcgcttc gttactgctc ttgaccgctc tcctctacgg aaaacatagc
     1441 cattattcga cgttttattt ctccatcctt gttcactaat gtcttggtaa caaaggctga
     1501 gtagtctttt gatgtgttat atcccttcca gacttcgtga ggatctaaag cgtaagcaca
     1561 aacctttcca gcaactggta ttcttaccaa agcacctttc tcctccaaat
//
