LOCUS       NZ_CP074192             1917 bp    DNA     circular CON 13-MAY-2024
DEFINITION  Raoultella planticola strain JBIWA001 plasmid pJBIWA001_10, complete
            sequence.
ACCESSION   NZ_CP074192
VERSION     NZ_CP074192.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN18916998
            Assembly: GCF_019968885.1
KEYWORDS    RefSeq.
SOURCE      Raoultella planticola
  ORGANISM  Raoultella planticola
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Raoultella.
REFERENCE   1  (bases 1 to 1917)
  AUTHORS   Gomi,R., Matsumura,Y., Tanaka,M., Ihara,M., Sugie,Y., Matsuda,T. and
            Yamamoto,M.
  TITLE     Emergence of rare carbapenemases (FRI, GES-5, IMI, SFC and SFH-1) in
            Enterobacterales isolated from surface waters in Japan
  JOURNAL   J Antimicrob Chemother 77 (5), 1237-1246 (2022)
   PUBMED   35137119
REFERENCE   2  (bases 1 to 1917)
  AUTHORS   Gomi,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-MAY-2021) Department of Environmental Engineering,
            Kyoto University, KyotoDaigakuKatsura, Nishikyo-ku, Kyoto-city
            615-8540, Japan
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 135x
            Sequencing Technology             :: DNBSEQ; Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_019968885.1-RS_2024_05_13
            Annotation Date                   :: 05/13/2024 04:14:11
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,989
            CDSs (total)                      :: 5,866
            Genes (coding)                    :: 5,727
            CDSs (with protein)               :: 5,727
            Genes (RNA)                       :: 123
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 85
            ncRNAs                            :: 13
            Pseudo Genes (total)              :: 139
            CDSs (without protein)            :: 139
            Pseudo Genes (ambiguous residues) :: 0 of 139
            Pseudo Genes (frameshifted)       :: 46 of 139
            Pseudo Genes (incomplete)         :: 109 of 139
            Pseudo Genes (internal stop)      :: 34 of 139
            Pseudo Genes (multiple problems)  :: 44 of 139
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP074192.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1917
                     /organism="Raoultella planticola"
                     /mol_type="genomic DNA"
                     /strain="JBIWA001"
                     /isolation_source="lake water"
                     /db_xref="taxon:575"
                     /plasmid="pJBIWA001_10"
                     /geo_loc_name="Japan: Shiga"
                     /lat_lon="35 N 136 E"
                     /collection_date="2020-02-05"
                     /collected_by="Kyoto University"
     gene            complement(143..379)
                     /locus_tag="KGP19_RS29910"
                     /old_locus_tag="KGP19_29770"
     CDS             complement(143..379)
                     /locus_tag="KGP19_RS29910"
                     /old_locus_tag="KGP19_29770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001676031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_031942344.1"
                     /translation="MTRLTNLTPAEKQFLDDAVAAAERASGKKLNQPNRHIVLNRARAQ
                     IESQRHADRQRALREEERQQAEFTWSRPRSPRR"
                     /name="hypothetical protein"
     gene            1080..1193
                     /locus_tag="KGP19_RS29915"
                     /old_locus_tag="KGP19_29775"
     CDS             1080..1193
                     /locus_tag="KGP19_RS29915"
                     /old_locus_tag="KGP19_29775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005761324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_032634168.1"
                     /translation="MHEPPVQSDCCALSGNYRLESNPERHAKAPLAAATGN"
                     /name="hypothetical protein"
     gene            1502..1804
                     /locus_tag="KGP19_RS29920"
                     /old_locus_tag="KGP19_29780"
     CDS             1502..1804
                     /locus_tag="KGP19_RS29920"
                     /old_locus_tag="KGP19_29780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005161566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TM2 domain-containing protein"
                     /protein_id="WP_031942343.1"
                     /translation="MSSMVYCRGCGKEIHETAKSCPHCGATNASSGSGEKSRIAAALLA
                     FFLGGFGAHKFYLGKIGQGFLYLIFCWTFIPAIIAFIEFIIYLCDSDEKFARKYG"
                     /name="TM2 domain-containing protein"
     Typing          complement(546..719)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="2.5600000000000002e-86"
     Typing          705..1189
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="93.648"
                     /coverage="80.0"
                     /evalue="0.0"
ORIGIN
        1 catgccgatt tccggcacct ttccccgggg aaaaccccga aaaacgttcc tgatgatttc
       61 tgcgcgtctg catggctatg cacggaaatg ccttgcctgc agtttcatca caaaactgca
      121 gcagaaacct cataacagcc actcaccggc gcggcgatcg cggacgtgac caggtaaatt
      181 cggcctgctg ccgttcttcc tcacgtagag cgcgctgccg gtcggcgtgc cgctgcgact
      241 caatctgcgc tcttgcccgg ttgagcacga tatgtcggtt cggctggttg agtttcttgc
      301 cggaagcacg ctctgcagct gcaacagcat catcaagaaa ttgcttctct gccggcgtca
      361 gattggtcag tcgcgtcatg taggtctcct gttcagcatc acgctggcca gtctgccaga
      421 caaggtggaa gcaatgaagc agcggcggaa tgtcagaacc atcagaaacg gtgaacggga
      481 gcggatttta atcaggtgcc gtgaagcgtt gggcaagccg tcaggcgcgc cagtggtcct
      541 ggcgggtttc ggggcgcagc cctgaaccag tcacgtagcg ctagcggagt gtatactggc
      601 ttaatatgtt ggcacggatg cggatgtcag tgaagtgctt catgtagcag gagaaaaagg
      661 cggcaccggc gcgtcagcag aacatgtagt aacgggagat gtgccgcttc ctcgctcact
      721 gactcgctgc gctcggtcgt tcggctgcgg cgagcggtac cggcttacgg gtgaggtgga
      781 aatttcctgg tggatgccag gaaggaactt aacagggaaa cgatgaggct gcggcgaagc
      841 cgtttttcca taggctccgc ccccctgaca agcatcacga aatctgacgc tcaaatcagt
      901 ggcggcgaaa cccgacagga ctataaagat cccaagggtt tccccctggt agctccctcg
      961 tgcgctctcc tgttcctgcc tttcggttta ccggtgtcat tccgctgtta tggccgcggt
     1021 ttctcattcc acgcctgaca ctcagttccg ggtaggcagt tcgctccaag ctggactgta
     1081 tgcacgaacc ccccgttcag tccgactgct gcgccttatc cggtaactat cgtcttgagt
     1141 ccaacccgga aagacatgca aaagcgccac tggcagcagc cactggtaac tgatttagag
     1201 gagttagtct tgaagttatg cgccggttaa ggctaaactg aaaggacaag ttttggtgac
     1261 tgcgctcctc caagccagtt acctcggttc aaagagttag tagctcagag aaccttcgaa
     1321 aaaccgcctt gcagggcggt tttttcgttt ccagagcaag agattacgac gctacagaaa
     1381 ggatctcaag aagatccttc accataatgg aaatctatcc cacccgagca tataggatgc
     1441 atatcgttat aaaacattgg atattatgca tcccaactaa aaataagctc gaggataaaa
     1501 aatgagttca atggtttact gccgaggatg cggcaaggaa atacacgaaa cagcaaagtc
     1561 atgcccacac tgcggagcca caaacgcctc ttcaggttca ggtgaaaaaa gtagaatcgc
     1621 agccgcgcta ttagcattct tccttggtgg atttggcgca cataaatttt acttaggtaa
     1681 aataggacag ggattcctgt atctaatttt ttgctggaca ttcatacccg cgatcatcgc
     1741 gtttattgag tttattattt atctatgcga ttccgatgaa aaattcgcaa gaaaatatgg
     1801 ctaactcata gcaaaaaagc cctgcggggc tttttttgta ccagtctgtg aggcacattt
     1861 accataacat cccttatcgg taccgcctaa gacgctctca gcgcgtttct gcggcct
//
