LOCUS       NZ_CP074191             2723 bp    DNA     circular CON 13-MAY-2024
DEFINITION  Raoultella planticola strain JBIWA001 plasmid pJBIWA001_9, complete
            sequence.
ACCESSION   NZ_CP074191
VERSION     NZ_CP074191.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN18916998
            Assembly: GCF_019968885.1
KEYWORDS    RefSeq.
SOURCE      Raoultella planticola
  ORGANISM  Raoultella planticola
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Raoultella.
REFERENCE   1  (bases 1 to 2723)
  AUTHORS   Gomi,R., Matsumura,Y., Tanaka,M., Ihara,M., Sugie,Y., Matsuda,T. and
            Yamamoto,M.
  TITLE     Emergence of rare carbapenemases (FRI, GES-5, IMI, SFC and SFH-1) in
            Enterobacterales isolated from surface waters in Japan
  JOURNAL   J Antimicrob Chemother 77 (5), 1237-1246 (2022)
   PUBMED   35137119
REFERENCE   2  (bases 1 to 2723)
  AUTHORS   Gomi,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-MAY-2021) Department of Environmental Engineering,
            Kyoto University, KyotoDaigakuKatsura, Nishikyo-ku, Kyoto-city
            615-8540, Japan
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 135x
            Sequencing Technology             :: DNBSEQ; Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_019968885.1-RS_2024_05_13
            Annotation Date                   :: 05/13/2024 04:14:11
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,989
            CDSs (total)                      :: 5,866
            Genes (coding)                    :: 5,727
            CDSs (with protein)               :: 5,727
            Genes (RNA)                       :: 123
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 85
            ncRNAs                            :: 13
            Pseudo Genes (total)              :: 139
            CDSs (without protein)            :: 139
            Pseudo Genes (ambiguous residues) :: 0 of 139
            Pseudo Genes (frameshifted)       :: 46 of 139
            Pseudo Genes (incomplete)         :: 109 of 139
            Pseudo Genes (internal stop)      :: 34 of 139
            Pseudo Genes (multiple problems)  :: 44 of 139
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP074191.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2723
                     /organism="Raoultella planticola"
                     /mol_type="genomic DNA"
                     /strain="JBIWA001"
                     /isolation_source="lake water"
                     /db_xref="taxon:575"
                     /plasmid="pJBIWA001_9"
                     /geo_loc_name="Japan: Shiga"
                     /lat_lon="35 N 136 E"
                     /collection_date="2020-02-05"
                     /collected_by="Kyoto University"
     gene            1..894
                     /locus_tag="KGP19_RS29895"
                     /old_locus_tag="KGP19_29755"
     CDS             1..894
                     /locus_tag="KGP19_RS29895"
                     /old_locus_tag="KGP19_29755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019725130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_080816845.1"
                     /translation="MHNAALGLFNDRLPHKPYFSDDLHFGVRIAGKERALLAKYIQFNQ
                     PHAMFWLGFDVDRAGAAIDWSDRNAPAPTLTITNPENGHAHLLYALETSIRTAPDGRMK
                     PLKYAAAVENALRKKLDADTGYSGLLCKNPNHGHWKIAVWQPELYTLDWLADFLDLNAA
                     NNKEIVADYGLGRNCTLFDKTRKWAYRAIRQGWPEYDQWLQACYERASAYNLQFSSPLD
                     DNEVIGIAKSIAKWTRANFSEGTFSDYVFRTHSSEIQSLRGRKSKGGGRPSLNEVWVDL
                     GVSRRTYFRMKSKLKG"
                     /name="replication initiation protein"
     gene            complement(924..1706)
                     /locus_tag="KGP19_RS29900"
                     /old_locus_tag="KGP19_29760"
     CDS             complement(924..1706)
                     /locus_tag="KGP19_RS29900"
                     /old_locus_tag="KGP19_29760"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_080901937.1"
                     /translation="MENHYEYLKLDMSASIDEIRDAIELNKNNDEARIRKIKSILLNER
                     FKSEYDEKLISYLINNGDSSRKADEKKQSLYIEQIKNLDNGELHNSYIYAAFFLLVLNF
                     SLSLVVSTQVDYVISFIVNILTIFVLYKDWKILEKNNLAVFSKWWVLISPVYLFKRSNA
                     KKESKKLFSLWMAIIIIFVASSLIFAGGKSTVESAACGVVSDIYRTQFHQPGLTCKSVT
                     ITESEGKNHYGIAEISDGSVKDITIKELSDGQIYVTVE"
                     /name="hypothetical protein"
     gene            2105..2341
                     /locus_tag="KGP19_RS29905"
                     /old_locus_tag="KGP19_29765"
     CDS             2105..2341
                     /locus_tag="KGP19_RS29905"
                     /old_locus_tag="KGP19_29765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001676031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001676031.1"
                     /translation="MNRLTNLTPAEKKFLDDAIAAAERASGKKLNQPNRHIVLNRARAQ
                     IESQRYADRQRALREDERQQSEFAWSRPRAPRR"
                     /name="hypothetical protein"
ORIGIN
        1 ttgcataacg ccgcactcgg actttttaac gaccgactcc cgcacaagcc gtacttctcg
       61 gacgatctgc acttcggtgt gcgtatcgca gggaaagaac gcgcactctt ggcaaagtac
      121 atccagttta atcagccgca tgccatgttc tggctgggct tcgacgtcga tcgcgccggt
      181 gcggccatcg actggagtga ccggaacgcg cccgcgccca cgctgaccat caccaacccg
      241 gaaaacgggc acgcgcacct gctatacgca ctggaaacct cgatacgtac tgcgccggac
      301 ggcagaatga aacctctgaa gtatgcagct gccgtggaaa acgcgctgcg taaaaaactg
      361 gatgctgata cagggtattc tggcctgctc tgcaagaatc cgaaccacgg tcactggaaa
      421 attgccgttt ggcagccaga actctacacg ctggactggc ttgctgattt cctcgatctg
      481 aacgcggcaa acaacaaaga gatcgttgcc gactatggct taggccgcaa ctgcactctg
      541 ttcgataaaa cacggaagtg ggcttatcgc gctatccgtc agggctggcc tgaatatgac
      601 cagtggctgc aagcttgcta tgaacgtgcc agtgcttaca acctgcaatt ttcatcgcct
      661 ctggatgata atgaggtgat tggcatagct aaaagtattg cgaaatggac tcgtgctaat
      721 tttagtgaag gtactttcag tgattatgtt tttcgtacgc attcatctga aatacaaagc
      781 ctccgaggga ggaaaagcaa aggtgggggg aggccgtcat taaatgaagt gtgggttgat
      841 ttgggtgtta gcagaagaac atatttcaga atgaagtcaa aactaaaagg ttagtggctg
      901 ggatcaacca gccactaact ttgttattca acagtgacgt atatttgccc atcactaagt
      961 tctttgatag tgatatcttt tacagatccg tcagatatct cagctatgcc atagtgattt
     1021 ttcccttcac tttctgtgat cgtcacagat ttgcaagtta gtcctggttg atggaactgt
     1081 gttctgtata tgtcgcttac gactccacag gctgcacttt ccactgtaga cttaccgcca
     1141 gcaaagatta agctactagc aacaaaaata atgattatcg ccatccacaa agagaagagt
     1201 tttttacttt ctttctttgc attggatctt ttaaataaat aaacaggtga tattaatacc
     1261 caccacttag aaaatacagc aaggttgttt ttttctaata ttttccagtc tttataaagc
     1321 acaaaaatgg tcaatatgtt cactatgaaa ctaattacat agtctacttg tgtgctaacc
     1381 actaatgata aagagaagtt taaaaccaac aggaaaaacg cggcgtatat gtatgagtta
     1441 tgcaactccc cattatctaa gttttttatc tgttcaatgt ataaactttg ttttttttca
     1501 tctgcttttc ttgatgagtc accattattt atcaagtatg atattaattt ctcatcatat
     1561 tcacttttga atcgctcatt aagtaagatt gattttatct tccttattct agcttcatca
     1621 ttatttttgt ttagctcaat agcatctctg atttcatcga ttgaagcaga catgtcaagt
     1681 ttcaggtatt cgtaatgatt ttccatgtaa ttccttgcag taagtacctt ctaaaaggtt
     1741 gattatacgc attaagaata gtcttaaaaa gggttctcgg cagttggcac taaacaacct
     1801 atatcagata acagccctct tttgtcagat ggctgttttt tgcagcaatt cctactcagt
     1861 catgggagcg cagcgtcacc attaagccag tatacactcc gctagcgcta cgtgactggt
     1921 tcagggctgc gccccgaaac ccgctaaaac cactgccgcg cctgcggctt gcccaacgtc
     1981 tcacgtcacc ggattaaaat ccgctcccgt tcaccgtttc tggctgtctt tcagcaccgc
     2041 cagcgcttca tcggttctgc tgtgtctggc agactgtgcg gagttattct gacgggagaa
     2101 tgctatgaac agactgacaa acctgacacc tgcagagaaa aaatttcttg atgatgctat
     2161 tgccgcagct gagagagcgt caggcaaaaa gctaaatcag ccgaaccggc atatcgtcct
     2221 gaacagagcg cgtgcgcaga ttgagtcgca gcgttacgcc gaccgccagc gtgcattacg
     2281 tgaggatgag cggcagcagt ccgagtttgc ctggtcacgt ccgcgcgcgc cgcgccgctg
     2341 attgcgcctt ttggcggttt agtggtgctg acactccgaa atcgtctgcc attcacccgc
     2401 gtgcatagcc atgcaggtac gcagaaatca tcaggggcgt tttttctcga tatgggcaca
     2461 gaaaggtgta tgtttcaggc cggaggcctc agaaacgcgc tgagggcgtt tgaggcggtg
     2521 cggccaacgg atgttatggt aaatcgtggt gagatcgaca gaagcctgcg gacggtgtaa
     2581 cgttaacccc agaaaaaaca aagccccgga aatcatgtca tatcttggcg gatcgcatga
     2641 ttaccagggc taggtcgaaa ccttgaaagg atattagcac atgaaccgtg ccagaaaaca
     2701 gcccgccata agcgtagggc gca
//
