LOCUS       NZ_CP073777             2317 bp    DNA     circular CON 04-APR-2024
DEFINITION  Enterobacter hormaechei strain SH19PTE2 plasmid pYUSHP2-6, complete
            sequence.
ACCESSION   NZ_CP073777
VERSION     NZ_CP073777.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN18859124
            Assembly: GCF_018255815.1
KEYWORDS    RefSeq.
SOURCE      Enterobacter hormaechei
  ORGANISM  Enterobacter hormaechei
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex.
REFERENCE   1  (bases 1 to 2317)
  AUTHORS   Wang,J.
  TITLE     Whole genome of Proteus cibarius SH19PTE2
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2317)
  AUTHORS   Wang,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-APR-2021) Key Laboratory of Prevention and Control of
            Biological Hazard Factors (Animal Origin) for Agrifood Safety and
            Quality, Ministry of Agriculture of China, Yangzhou University,
            No.48 Wenhui East Road, Yangzhou, Jiangsu 225009, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: SPAdes v. 3.10.0
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100.0x
            Sequencing Technology             :: PacBio
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_018255815.1-RS_2024_04_04
            Annotation Date                   :: 04/04/2024 06:03:56
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,100
            CDSs (total)                      :: 4,981
            Genes (coding)                    :: 4,891
            CDSs (with protein)               :: 4,891
            Genes (RNA)                       :: 119
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 91
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 91
            Pseudo Genes (frameshifted)       :: 22 of 91
            Pseudo Genes (incomplete)         :: 72 of 91
            Pseudo Genes (internal stop)      :: 21 of 91
            Pseudo Genes (multiple problems)  :: 19 of 91
            Pseudo Genes (short protein)      :: 1 of 91
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP073777.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2317
                     /organism="Enterobacter hormaechei"
                     /mol_type="genomic DNA"
                     /strain="SH19PTE2"
                     /isolation_source="pig feces"
                     /db_xref="taxon:158836"
                     /plasmid="pYUSHP2-6"
                     /geo_loc_name="China:Shanghai"
                     /lat_lon="31.23 N 121.47 E"
                     /collection_date="2019"
                     /collected_by="Wang Yan"
     gene            629..865
                     /locus_tag="KFO54_RS25395"
                     /old_locus_tag="KFO54_25395"
     CDS             629..865
                     /locus_tag="KFO54_RS25395"
                     /old_locus_tag="KFO54_25395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001676031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_016947370.1"
                     /translation="MKRLINLTPAEKRFLDDAVAAAERASGKKLNQPNRHIVLNRARAQ
                     IESQRQAERQRSAREEERQQAEFTWSRPRAPRR"
                     /name="hypothetical protein"
     gene            1154..1690
                     /locus_tag="KFO54_RS25400"
                     /old_locus_tag="KFO54_25400"
     CDS             1154..1690
                     /locus_tag="KFO54_RS25400"
                     /old_locus_tag="KFO54_25400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002069891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_023150440.1"
                     /translation="MKKVYTAIILIVLLCGGVLSANYIFLQRHMNEVLKEDPRNDGISV
                     WVYYKWFVNSSEINYDLRSVSAENSSLDVSRVMLQFAEKVKDYDFSKVYLSYRGKDKFY
                     LKGEYFKTLGQEYGIQNPVYTLRTIPENVYMLNGERAYSVWEGGLLGVMGKQMEDLSDF
                     SKAWYLDDFIKSMSD"
                     /name="hypothetical protein"
     gene            complement(2071..2184)
                     /locus_tag="KFO54_RS25750"
                     /old_locus_tag="KFO54_25405"
     CDS             complement(2071..2184)
                     /locus_tag="KFO54_RS25750"
                     /old_locus_tag="KFO54_25405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005761324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_071789001.1"
                     /translation="MHEPPVQSDCCALSGNYRLESNPVRHAKAPLAAATGN"
                     /name="replication initiation protein"
     Typing          221..396
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="84.358"
                     /coverage="82.0"
                     /evalue="3.53e-41"
     Typing          complement(2..238)
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="86.722"
                     /coverage="93.0"
                     /evalue="2.45e-66"
     Typing          complement(1867..2315)
                     /name="rep_cluster_2358"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="84.519"
                     /coverage="90.0"
                     /evalue="2.31e-121"
ORIGIN
        1 agggggaaac gcctgggatc tttaagtcct gtcgggtttc gccgccactg atttgagcgt
       61 cagattttgt gatgcttgtc aggggggcgg agcctatgga aaaacggcag cgccgcatcc
      121 tttttcgggc ccttcttgac ctcagcttca tttcgttacc tcgtcattcg tgagcaggta
      181 acgcccgccg cagtctcacg gcaggagcgt agcgaccgag tgagcgagga ggcgtcattt
      241 caccatcatc agcattttgc acttacgcac cgcagccgca tttttcccct gccacatgaa
      301 gcacttccct gagccaccac gcccaactaa catattaagc cagtatacac tccgctagcg
      361 ctacgtgact ggtccggcgc tgcgcccgga acccgcaaat tcagaaactg aaagcgggac
      421 aagatgtgtt tttggagtac cgccatcatg atgccggcac caaaacgata tctcagggct
      481 gcgccccgat accccgccaa cgcttcacgg caccggatta aaatccgttc ccgttcaccg
      541 tttctcaggg ccgttcccgg ctgcaggttc ttcatgaggt tcgccgtgtc tggcagactg
      601 tgcagagtta ttctgaccgg agaacgccat gaaacgactg ataaacctga cgcctgccga
      661 gaaaagattt ctcgacgatg ctgttgccgc cgctgagaga gcgtcaggca agaagctgaa
      721 tcagcccaac aggcacattg tccttaacag ggctcgtgca cagatcgaat cgcagcgcca
      781 ggcagaacgg cagcgatctg cgcgtgagga ggagcggcag caggcggaat ttacctggtc
      841 gcgtccgcgg gcgccgcgtc gctgattgcc actttcgtcg gttttgtggg gagttcaggg
      901 cgaaacagcg tggtattcac tccggtgcat agtcattcgc caccgtaaaa ctcaccagag
      961 cgattccggg cggttttctg ggggtaagac gtgctctttt gtggctgaag gcgcagaaac
     1021 gccctgaggc cgttttcgcg gtgcgcgtaa gaagacgtta tggtaaatcg atgcttaatt
     1081 ccttgctaac ttatggcacc ttagcttaaa aatctcaggg taaactttag agcagttgag
     1141 atggattata gaaatgaaaa aagtatatac agcaatcata ttaatagtac tcttatgtgg
     1201 tggtgtttta tctgccaact acatttttct tcaaaggcac atgaatgagg ttctgaaaga
     1261 agatccaagg aatgatggta ttagcgtttg ggtttattat aagtggtttg taaactcttc
     1321 cgagattaat tatgaccttc gttctgtttc tgcagaaaat agttcactgg atgttagtag
     1381 ggtgatgctg caatttgctg aaaaagtgaa agattatgat tttagtaagg tttatcttag
     1441 ttacagaggg aaagataagt tttacttaaa aggagagtat tttaaaactc ttgggcagga
     1501 atatggtatt caaaaccccg tatatacatt aagaacaatt ccggaaaacg tgtatatgtt
     1561 aaatggagag agagcttata gtgtttggga gggtgggctt ctgggtgtaa tgggaaaaca
     1621 gatggaagat cttagtgatt tctctaaggc ttggtactta gatgatttca ttaaaagcat
     1681 gagcgattaa tttgaagcga tcagtataca ttgacgatta gctcacgcaa atcgctcatt
     1741 ggtcactggg gtgtttttac tcgtagatgc tttagatgtg tgacctgctc cccgtggatt
     1801 acaaggccgt catctgataa tgcccctaat gggtcagatc tctaggatag tagcaataca
     1861 gcaaggaact tcttgagatc ctttctgttg cgtcgtaatc tcttgctctg taaacgaaaa
     1921 aaccgcccag caaggcggtt ttctcgaagg ttctcagagc agcaactctt tgaaccgagg
     1981 taactggcta gttagaggag cgcagtcacc aaaactgttc gtttagttta gccttaactg
     2041 gcgcatgact tcaagactat ctcctctaaa tcagttacca gtggctgctg ccagtggcgc
     2101 ttttgcatgt cttaccgggt tggactcaag acgatagtta ccggataagg cgcagcagtc
     2161 ggactgaacg gggggttcgt gcatacagtc cagcttggag cgaactgcct acccggaact
     2221 gagtgtcagg cgtggaatga gataaacgcg gccataacag cggaatgaca ccggtaaacc
     2281 gaaaggcagg aacaggagag cgcacgaggg agccacc
//
