LOCUS       NZ_CP073776             2460 bp    DNA     circular CON 04-APR-2024
DEFINITION  Enterobacter hormaechei strain SH19PTE2 plasmid pYUSHP2-5, complete
            sequence.
ACCESSION   NZ_CP073776
VERSION     NZ_CP073776.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN18859124
            Assembly: GCF_018255815.1
KEYWORDS    RefSeq.
SOURCE      Enterobacter hormaechei
  ORGANISM  Enterobacter hormaechei
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex.
REFERENCE   1  (bases 1 to 2460)
  AUTHORS   Wang,J.
  TITLE     Whole genome of Proteus cibarius SH19PTE2
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2460)
  AUTHORS   Wang,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-APR-2021) Key Laboratory of Prevention and Control of
            Biological Hazard Factors (Animal Origin) for Agrifood Safety and
            Quality, Ministry of Agriculture of China, Yangzhou University,
            No.48 Wenhui East Road, Yangzhou, Jiangsu 225009, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: SPAdes v. 3.10.0
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100.0x
            Sequencing Technology             :: PacBio
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_018255815.1-RS_2024_04_04
            Annotation Date                   :: 04/04/2024 06:03:56
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,100
            CDSs (total)                      :: 4,981
            Genes (coding)                    :: 4,891
            CDSs (with protein)               :: 4,891
            Genes (RNA)                       :: 119
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 91
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 91
            Pseudo Genes (frameshifted)       :: 22 of 91
            Pseudo Genes (incomplete)         :: 72 of 91
            Pseudo Genes (internal stop)      :: 21 of 91
            Pseudo Genes (multiple problems)  :: 19 of 91
            Pseudo Genes (short protein)      :: 1 of 91
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP073776.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2460
                     /organism="Enterobacter hormaechei"
                     /mol_type="genomic DNA"
                     /strain="SH19PTE2"
                     /isolation_source="pig feces"
                     /db_xref="taxon:158836"
                     /plasmid="pYUSHP2-5"
                     /geo_loc_name="China:Shanghai"
                     /lat_lon="31.23 N 121.47 E"
                     /collection_date="2019"
                     /collected_by="Wang Yan"
     gene            359..841
                     /locus_tag="KFO54_RS25380"
                     /old_locus_tag="KFO54_25380"
     CDS             359..841
                     /locus_tag="KFO54_RS25380"
                     /old_locus_tag="KFO54_25380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001565850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_202974839.1"
                     /translation="MNTKKISKLERHTYMDESGEIKQDSKIETFSIPAEPPYVKLYIAD
                     IAMIHGLSKSQNDVLLQLAMLIGWDGFVSVSKTRFEKTIQPRVHIEYQTFKNIIAALVD
                     KQIFLRAGRGELEANPFLFARGDWPSIYERRKKIELRISYDSNGRTVQTTVTDDER"
                     /name="hypothetical protein"
     gene            828..1058
                     /locus_tag="KFO54_RS25385"
                     /old_locus_tag="KFO54_25385"
     CDS             828..1058
                     /locus_tag="KFO54_RS25385"
                     /old_locus_tag="KFO54_25385"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_029488008.1"
                     /translation="MMNAEDKLFKKVDRLMLHDSLKKNEVLTVWERTFLSSTYSIYRRT
                     SGNEFSTKGLSPKQKSTAFSILKKYNYHLMD"
                     /name="hypothetical protein"
     gene            complement(1157..2125)
                     /gene="mobV"
                     /locus_tag="KFO54_RS25390"
                     /old_locus_tag="KFO54_25390"
     CDS             complement(1157..2125)
                     /gene="mobV"
                     /locus_tag="KFO54_RS25390"
                     /old_locus_tag="KFO54_25390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000024818.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /GO_process="GO:0006310 - DNA recombination [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobV family relaxase"
                     /protein_id="WP_000024818.1"
                     /translation="MANYAIMRCKKLTGMGSVASALQHCYRERETPNANAERTPENYCS
                     VSKSTDQAMGRVRELLPEKRRKDAVLAVEYVMTASPEWWKEATPRQQAEFFARSEQWLE
                     KKYGKDRVVAAVVHRDEATPHLSAFVVPLTQDGRLSAKEFIGGRSKMREDQSTYAESVK
                     KLGLERGIEGSRATHQTVQHYYESINRGTRSQVSISPEALEPRVLRKGIFTKDVEDQAA
                     IAKRLSHAVNDGFAGTIAMASQSAQNAKRARELQKTMDAQQKRLQSVTEPFKGLSREQM
                     TEILMMAQRFKQQNQEKEKQQRIEREKQRQTRSRGMGGMER"
                     /name="mobV"
     Typing          complement(1161..2134)
                     /name="MOBV"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="95.077"
                     /coverage="96.0"
                     /evalue="0.0"
ORIGIN
        1 gccgcgagtc tgtccgttcg aggaagcgga atttccactc cccggacata gaaatccgta
       61 cgctccagac tcaaaaaagc tcgtttttcg atgtttaaaa atggcgtttt tcagccttta
      121 ttttccccct taatatatag atatagatac gggaacccgc gcacaccaag ggctagagag
      181 aagaatcgta ctcacctcaa gtactaatcg tacttacctc aagtactaat cgtacttacc
      241 tcaagtacta atcgtactca cctcaagtac taatcgtact ttaggtaagg tacttgacta
      301 ccggcatctt tagtacttaa atgtgagtac taaaaacatg ctgatacatg gggctagagt
      361 gaatacaaaa aagatttcta agcttgaacg gcatacatac atggacgaga gcggagagat
      421 taaacaagac tctaagatcg agactttttc tatcccggct gaaccgccct acgtcaagct
      481 ttacatcgca gacattgcga tgattcatgg tttgtcaaaa tctcaaaatg atgtgctttt
      541 gcagttggca atgctgattg gatgggatgg ctttgtatct gtatcaaaaa ctagatttga
      601 gaagaccata caacctaggg ttcatattga atatcagacg tttaaaaaca taatcgctgc
      661 ccttgttgat aaacaaatct ttctccgggc agggcgggga gagcttgaag ccaatccgtt
      721 tctttttgct cggggagact ggccttcaat ttacgaaaga agaaaaaaaa tagagttaag
      781 aatcagttat gattccaatg gaaggacagt acaaacaacg gtaacggatg atgaacgctg
      841 aagataagct attcaaaaaa gtagatagat taatgctgca tgactctcta aaaaagaatg
      901 aggttttgac tgtttgggag cgtacttttt taagtagtac atacagcata tatcgcagaa
      961 caagcggtaa tgaattttca actaagggat tgtcaccaaa acaaaaaagc accgcttttt
     1021 ctattttgaa aaaatacaat taccatctga tggattagct ggactcagcg ttatacaggg
     1081 cggcagaacc tgatctctgg aatgccgcaa atgacgtcac tttgcggcgt tagccctatc
     1141 ctgcatcgca tcaaaactaa cgctccatac cacccatgcc acgcgatcgc gtctgtcgct
     1201 gtttttcacg ttcaatacgc tgctgttttt ccttttcctg gttttgctgc ttaaaccgct
     1261 gagccatcat caggatttcg gtcatctgct ctctggaaag ccccttaaaa ggctctgtaa
     1321 cgctctgtag gcgtttctgc tgcgcatcca tagtcttctg tagctcacgc gctctttttg
     1381 cgttctgggc gctctgagag gccatagcga tggttcctgc aaagccatcg ttcactgcgt
     1441 ggcttagacg tttggctatg gctgcctgat cttccacgtc tttggtgaaa atgcccttcc
     1501 gcaatacacg cggctccagc gcctccggcg agatcgatac ctggctacgg gtgccacggt
     1561 ttatcgattc gtagtagtgc tgaactgtct gatgcgtggc gcggcttccc tcgatgccgc
     1621 gctcaagacc cagttttttt actgattcag cgtaggtgct ctgatcttca cgcatctttg
     1681 accgcccgcc aataaactct ttcgcggaca gccgtccatc ctgcgtcaat ggcaccacga
     1741 acgcagacag gtgcggggtg gcctcgtccc ggtgaaccac cgccgccaca acacgatcct
     1801 tcccgtattt cttctccagc cattgctcag agcgggcgaa aaactccgcc tgctgccgtg
     1861 gtgtggcctc tttccaccac tcagggcttg ctgtcataac gtattcaacg gccagtaccg
     1921 catctttacg gcgtttttcc ggcagcagct cccgcacacg ccccattgcc tgatccgttg
     1981 atttggacac agagcagtag ttttctggtg tccgttcagc gttagcgttc ggcgtctcac
     2041 gctctcggta gcagtgctgc aacgcgctgg ccacgctccc catccccgtc agctttttgc
     2101 agcgcattat cgcgtagttc gccatgttcc cccctgattc cggcattcat tcagccaggc
     2161 gggggagcgc attgcgatac ctccggcggg ccactatcaa gatgatagtg tactcactag
     2221 actttgcttc gcaaaatcgt tcgggaagct gcgcttccaa aggtcaaaat caacggcggt
     2281 ctggcaggtg gaaggcgtcg ctccgcgtca cctcccacca ctgccaagcc tgttttatcc
     2341 ggtgagtcgt caagggtaaa tggcactcgc tacgctcgcc cttgacgaaa tcaggcaatg
     2401 aatatcgttt ttgaaagagc aggaaccgct cgccgcaaga acggattagg gagcggcatc
//
