LOCUS       NZ_CP073775             3223 bp    DNA     circular CON 04-APR-2024
DEFINITION  Enterobacter hormaechei strain SH19PTE2 plasmid pYUSHP2-4, complete
            sequence.
ACCESSION   NZ_CP073775
VERSION     NZ_CP073775.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN18859124
            Assembly: GCF_018255815.1
KEYWORDS    RefSeq.
SOURCE      Enterobacter hormaechei
  ORGANISM  Enterobacter hormaechei
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex.
REFERENCE   1  (bases 1 to 3223)
  AUTHORS   Wang,J.
  TITLE     Whole genome of Proteus cibarius SH19PTE2
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3223)
  AUTHORS   Wang,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-APR-2021) Key Laboratory of Prevention and Control of
            Biological Hazard Factors (Animal Origin) for Agrifood Safety and
            Quality, Ministry of Agriculture of China, Yangzhou University,
            No.48 Wenhui East Road, Yangzhou, Jiangsu 225009, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: SPAdes v. 3.10.0
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100.0x
            Sequencing Technology             :: PacBio
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_018255815.1-RS_2024_04_04
            Annotation Date                   :: 04/04/2024 06:03:56
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,100
            CDSs (total)                      :: 4,981
            Genes (coding)                    :: 4,891
            CDSs (with protein)               :: 4,891
            Genes (RNA)                       :: 119
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 91
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 91
            Pseudo Genes (frameshifted)       :: 22 of 91
            Pseudo Genes (incomplete)         :: 72 of 91
            Pseudo Genes (internal stop)      :: 21 of 91
            Pseudo Genes (multiple problems)  :: 19 of 91
            Pseudo Genes (short protein)      :: 1 of 91
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP073775.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3223
                     /organism="Enterobacter hormaechei"
                     /mol_type="genomic DNA"
                     /strain="SH19PTE2"
                     /isolation_source="pig feces"
                     /db_xref="taxon:158836"
                     /plasmid="pYUSHP2-4"
                     /geo_loc_name="China:Shanghai"
                     /lat_lon="31.23 N 121.47 E"
                     /collection_date="2019"
                     /collected_by="Wang Yan"
     gene            310..480
                     /locus_tag="KFO54_RS25350"
                     /old_locus_tag="KFO54_25350"
     CDS             310..480
                     /locus_tag="KFO54_RS25350"
                     /old_locus_tag="KFO54_25350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005761324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_004193911.1"
                     /translation="MHEPPVQSDYHARSGNYQLESNPERHDKSPVAVAIGNWVHGAEIV
                     ENAYRVLEVKA"
                     /name="hypothetical protein"
     gene            complement(689..1021)
                     /locus_tag="KFO54_RS25355"
                     /old_locus_tag="KFO54_25355"
     CDS             complement(689..1021)
                     /locus_tag="KFO54_RS25355"
                     /old_locus_tag="KFO54_25355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008784643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EmrE family multidrug efflux SMR transporter"
                     /protein_id="WP_016807542.1"
                     /translation="MNTYIFLGGAIVAEVIGTIFMKYSEGFTRLWPSVGTAISYCAAFY
                     LLSQTLENIPTGIAYAIWSGAGIVLISLAGWLVSGQKLDWPAIAGMFLICVGVLVINIF
                     SKSSAH"
                     /name="EmrE family multidrug efflux SMR transporter"
     gene            complement(1189..1404)
                     /locus_tag="KFO54_RS25360"
                     /old_locus_tag="KFO54_25360"
     CDS             complement(1189..1404)
                     /locus_tag="KFO54_RS25360"
                     /old_locus_tag="KFO54_25360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_024195375.1"
                     /translation="MTELEKQLLSALEQLQQDYSKRLDEWENAFAEWRTMSGLIQRENA
                     ALNERVTVLSRQVQSLSEQLRRLSKG"
                     /name="MbeD family mobilization/exclusion protein"
     gene            complement(1408..1893)
                     /locus_tag="KFO54_RS25365"
                     /old_locus_tag="KFO54_25365"
     CDS             complement(1408..1893)
                     /locus_tag="KFO54_RS25365"
                     /old_locus_tag="KFO54_25365"
                     /inference="COORDINATES: protein motif:HMM:NF016710.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_025367738.1"
                     /translation="MNSLLTLAKDLEQKSKAQQQTTGEMLKAAFSEHEKSVRAELSESE
                     KRISAAILDHDRKLSSAMSQRTKGMLRMVSQTWLTIVLVSALLIASSAGILWWQGQQIL
                     ENYTTIREQKSTQAMLSERNSGVQLSTCGEQRRRCVRVNPEAGQFGEDSSWMILAGK"
                     /name="MbeB family mobilization protein"
     gene            complement(<1928..2632)
                     /locus_tag="KFO54_RS25745"
                     /old_locus_tag="KFO54_25370"
                     /pseudo=""
     CDS             complement(<1928..2632)
                     /locus_tag="KFO54_RS25745"
                     /old_locus_tag="KFO54_25370"
                     /inference="COORDINATES: protein motif:HMM:NF015397.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            complement(2571..2894)
                     /locus_tag="KFO54_RS25375"
                     /old_locus_tag="KFO54_25375"
     CDS             complement(2571..2894)
                     /locus_tag="KFO54_RS25375"
                     /old_locus_tag="KFO54_25375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000957083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_004193914.1"
                     /translation="MLTMWVTEDEHRRLLERCEGKQLAAWMRQTCLDEKPARAGKLPSI
                     SPALLRQLAGMGNNLNQIARQVNAGGGSGHDRVQIVAALMAIDAGLERLRHAVLEKGAD
                     DDR"
                     /name="MobC family plasmid mobilization relaxosome protein"
     ARG             complement(690..1021)
                     /name="qacG"
                     /gene="qacG"
                     /gene_name="small multidrug resistance (SMR) antibiotic
                     efflux pump"
                     /tool="rgi"
                     /drug_class="disinfecting agents and antiseptics"
                     /identity="41.35"
                     /coverage="102.8"
     Typing          complement(2991..3182)
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="92.308"
                     /coverage="89.0"
                     /evalue="3.38e-71"
     Typing          52..439
                     /name="rep_cluster_2373"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="88.265"
                     /coverage="90.0"
                     /evalue="3.9799999999999997e-128"
     Typing          complement(1092..2581)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="91.784"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 ccagctcaca gattacggga taagcaaatg ccgctcgaag caggaaaggc caagaaaagg
       61 atgcggagtt gccgtttttc cataggctcc gcccccctga cgagtatcac gaaaatgacg
      121 ctcaaatcag cggtggcgaa acccgatgcg gcttaaagat accaggcgtt tccccctggt
      181 ggctccctcg tgctcccccg cattcctgcc tttcggttta ccggtgtcat tccgctgtta
      241 tggccgcggt ttctcattcc acgcctgaaa ctcggttccg ggtaggcagt tcgctccagg
      301 atggactgta tgcacgaacc ccccgttcag tccgactacc acgcccgttc cggtaactat
      361 caacttgagt ccaacccgga aagacacgac aaatcgccag tggcggtagc cattggtaac
      421 tgggttcacg gagcagagat tgtagagaat gcctacagag ttcttgaagt gaaagcctga
      481 gtgcggctac actgaaagga cagtttaggt atctgcgctc cgtgaaagcc agttaccatc
      541 ggaacaaaga gttggtagct ctgaattccg gcaaacgaac caccgttggt agcggtggtt
      601 tttttgttta cagggaaaaa gattacgcgc agaaagaaag gatctcaagg aaatcctttt
      661 gctttggcca atatgcttcg gtaaaaagtt aatgcgcaga agattttgaa aaaatattaa
      721 taaccaaaac tccaacgcaa ataaggaaca ttcctgcaat tgcgggccaa tcaagttttt
      781 gaccgctaac caaccaacca gctaggctta ttagtacaat tcccgcacca gaccaaattg
      841 cgtaagcaat accggtaggt atattttcca atgtttggga aagcagataa aaggcagcgc
      901 aataacttat tgcagttcct acagacggcc acaggcgtgt aaatccttct gaatatttca
      961 taaagatggt acctatgact tcagccacaa tagcccctcc caggaaaata tatgtattca
     1021 taaaaatacc tcatgttgaa aaatttaaat atctttacat aacaactaat taatagaacc
     1081 cggcttatca tagcgaagga ccatgatgct gccactgcga tcgttccagc tccagcgctt
     1141 tctggtgctg caccgcccgc tcctgctgcc ggtgagtttc tatcgcgttc agcctttcga
     1201 caaccggcgc agctgctcgc tcaaactctg cacctgcctg ctcaagaccg tgacgcgctc
     1261 gttcagcgcc gcgttctccc gttgaataag accagacatc gtccgccatt ccgcgaaggc
     1321 gttctcccac tcgtccagcc ttttcgagta gtcctgctgt agctgctcta atgcgctcag
     1381 caactgtttt tccagctccg tcatgtgcta tttccccgcc agtatcatcc agctcgagtc
     1441 ctctccgaac tgtcccgctt ccgggttcac cctcacgcag cggcgtctct gctcgccgca
     1501 ggtcgagagc tgtacgccgc tgttcctctc tgacagcatg gcctgcgtgc tcttctgctc
     1561 ccggatggtc gtatagttct cgagtatctg ctgcccctgc caccacagaa tgcccgcgct
     1621 cgacgctatc agcagcgcgg agaccagaac gatggtcagc cacgtctggc tgaccatgcg
     1681 cagcatccct ttcgtgcgct ggctcatggc tgaggacagc ttccggtcgt ggtcgaggat
     1741 ggcggcgctg attctcttct cgctttcgct cagttccgct ctgacagact tctcgtgctc
     1801 gctgaatgcg gctttcagca tctcgccggt agtctgctgc tgcgctttcg atttctgctc
     1861 taagtccttc gccagcgtta aaagactgtt catagatggc tcccttcagt cggatgtttc
     1921 gccccccgtc cgggtcggca atgctgatgc tgctttttgt ggtgcgcacc acctcaaaac
     1981 ctgcgctttc cagcgcctca gtgacgtcct gacgcgtttt cagctccccg gatgaggcaa
     2041 gggcaagcag gccgctcgta atcgcctggg cggcttcctg cttcgcttcc ggcagcgcgg
     2101 aaggcgagac cagcacccgc cggttctccg gcgcgttcgg gtcatgcagc cccagcctgc
     2161 cgttcactat ggtctgccag gcatcgatgc gcggacggtc ggcgcggtcg taatacggct
     2221 gtagccgctt gccggtcaga agctccgtgt tcgggatcag gaagttcagc tccagccgcc
     2281 ccttgtcccg gtgctcaacc cacagcacgc tgtactggtc tttatcgagt ccgggcatca
     2341 gaacccgctc gaaactcgcc atcagctttt cgcgctggcc gggcggtaaa tcctgttcgg
     2401 caaaagacag aacgccggaa gtgtactttt tggcgtaggg cgaggcgtcg ataagctccc
     2461 ggacttcatc cggcttcccc tgcagaacgc tggcgccgtc gcgctggcga tctttaccca
     2521 gcagataatc gaccggcccg ccgccgccgc cgcgcccccg aggatgaaac ttaacgatca
     2581 tcatcagcac ccttttccag tacggcatgc cgcaaccgct cgagtccggc atcgatggcc
     2641 atcagcgcgg cgacaatctg cacgcggtcg tgtccgcttc caccaccggc gttaacctgg
     2701 cgggcaatct ggttaaggtt gttccccatg ccggcaagct gacgaagcag cgccggcgag
     2761 atcgacggaa gtttgccggc gcgtgcgggc ttctcgtcca ggcacgtctg ccgcatccag
     2821 gccgcgagtt gcttaccctc gcagcgctcc agcagacgcc ggtgctcgtc ctcagtcacc
     2881 cacatggtga gcattttgct gcgtttgtct gccaatccgg cctcctgata acgccgggac
     2941 ggacgggaaa tcttttcccg gtcggcacgg tgttggacaa gccgcaggcg cggcagtggt
     3001 tttagcgggt ttcggggcgc agccctgaac cagtcacgta gcgctagcgg agtgtatact
     3061 ggctaaacat gttatgacgg agtggcaatt tatgaaagtg cttcatgtga caggggaaaa
     3121 atgcggctgc cgggcgtaag tgcaaaatgc aggtggtgat gaaatgacgc ctcctcgctc
     3181 actcggtcgc tacgctcctg ccgtgagact gcggcgggcg tta
//
