LOCUS       NZ_CP073717             3904 bp    DNA     circular CON 11-JUN-2024
DEFINITION  Salmonella enterica subsp. enterica serovar Bovismorbificans strain
            2020LSAL11867 plasmid unnamed2, complete sequence.
ACCESSION   NZ_CP073717
VERSION     NZ_CP073717.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN18747132
            Assembly: GCF_018340585.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Bovismorbificans
  ORGANISM  Salmonella enterica subsp. enterica serovar Bovismorbificans
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3904)
  AUTHORS   Delannoy,S., Cadel-Six,S., Bonifait,L., Tran,M.-L., Cherchame,E.,
            Bauge,L., Romero,K., Rouxel,S., Thepault,A., Cordevant,C.,
            Chemaly,M., Brisabois,A. and Fach,P.
  TITLE     Closed genome sequence of a Salmonella enterica strain of serovar
            Bovismorbificans isolated from a pork-dried sausage associated with
            an outbreak in France
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3904)
  AUTHORS   Delannoy,S., Cadel-Six,S., Bonifait,L., Tran,M.-L., Cherchame,E.,
            Bauge,L., Romero,K., Rouxel,S., Thepault,A., Cordevant,C.,
            Chemaly,M., Brisabois,A. and Fach,P.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-APR-2021) Laboratory for Food Safety, French Agency
            for Food, Environmental and Occupational Health & Safety, 44 rue
            Pierre et Marie Curie, Maisons Alfort 94700, France
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 17-MAR-2021
            Assembly Method                   :: Unicycler v. MARCH-2021
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100.0x
            Sequencing Technology             :: Illumina NovaSeq; MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_018340585.1-RS_2024_06_11
            Annotation Date                   :: 06/11/2024 04:09:47
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,523
            CDSs (total)                      :: 4,402
            Genes (coding)                    :: 4,307
            CDSs (with protein)               :: 4,307
            Genes (RNA)                       :: 121
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 95
            CDSs (without protein)            :: 95
            Pseudo Genes (ambiguous residues) :: 0 of 95
            Pseudo Genes (frameshifted)       :: 41 of 95
            Pseudo Genes (incomplete)         :: 68 of 95
            Pseudo Genes (internal stop)      :: 14 of 95
            Pseudo Genes (multiple problems)  :: 24 of 95
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP073717.1.
            Bacteria and source DNA available from ANSES - Laboratory of Food
            Safety - Salmonella and Listeria Unit - 14 rue Pierre et Marie
            Curie - 94701 Maisons-Alfort Cedex FRANCE.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3904
                     /organism="Salmonella enterica subsp. enterica serovar
                     Bovismorbificans"
                     /mol_type="genomic DNA"
                     /strain="2020LSAL11867"
                     /serovar="Bovismorbificans"
                     /isolation_source="pork product"
                     /sub_species="enterica"
                     /db_xref="taxon:58097"
                     /plasmid="unnamed2"
                     /geo_loc_name="France"
                     /lat_lon="48.855976 N 2.3444382 W"
                     /collection_date="2021-02"
                     /collected_by="ANSES"
                     /note="S. 6, 8, 20: r, [i]: 1,5"
     gene            complement(join(3620..3904,1..162))
                     /locus_tag="KCG42_RS22505"
                     /old_locus_tag="KCG42_22510"
     CDS             complement(join(3620..3904,1..162))
                     /locus_tag="KCG42_RS22505"
                     /old_locus_tag="KCG42_22510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000184721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraD"
                     /protein_id="WP_000184723.1"
                     /translation="MTNREEWLSAKIAYINGLKSPSEQQRLLVLLAEKKNRTTTDEKTL
                     SALIRAEKTAEKAAAAKARVTAIIAAERKAAARAERKARDHELYKAAGLMIVAGLVDSK
                     TGKPKFSAAELVGALAGIAELPRNHPKWQEWERRGKELLTKDSA"
                     /name="conjugal transfer protein TraD"
     gene            334..1884
                     /locus_tag="KCG42_RS22510"
                     /old_locus_tag="KCG42_22515"
     CDS             334..1884
                     /locus_tag="KCG42_RS22510"
                     /old_locus_tag="KCG42_22515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001624483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobA/MobL family protein"
                     /protein_id="WP_001624483.1"
                     /translation="MASYHCTVKAGAKGSALKHADYISRSGEYKSYKSREDLEFSSSGN
                     MPSWAKKNPAELWKAADEFERKNGTAYREIEIALPRELTREQRIELVEDFVQKELGDRH
                     AYQYAIHNPPGAIDGKEQPHAHIMFCERINDGIERDPQQFFKRANSKSPERGGAKKASI
                     PQTAGERKAALVALRSRWADVQNEHLARYGHESRVDHRSLKEQGINRTPEVHLGPVQAA
                     SLNGEQIVAIQERRNAERELKTARDAANAIQQEQEQKQKIKAVEPVRSARSPELLLQYR
                     KVMKTVIQGEARLARLGDANPNALKEHKLLQNAKAKKDSLSEWSRRIYEGARYLDKLGR
                     NVVSAQRELRELQEQRNALNGIRGLFRGADKREIDARILEQKSVLETAEHERNEFRNKL
                     QQAESEWDKENAAFKRTEGYKYVGDLDRYREREILAAASLENTRQKVAEEVSVARSQML
                     SLEPELSISGDEKAQMRHELLAEMAQERQQQEEKALRIQRSWAREASRSNERDQDMER"
                     /name="MobA/MobL family protein"
     gene            2340..3359
                     /locus_tag="KCG42_RS22515"
                     /old_locus_tag="KCG42_22520"
     CDS             2340..3359
                     /locus_tag="KCG42_RS22515"
                     /old_locus_tag="KCG42_22520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001271373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_011017196.1"
                     /translation="MSAALQYFEENLPRRPYHTDDLAFGLRISGKGRALLARYIQQNQP
                     HAQFWLVFDVDREGAAIDWSDRNAPAPNITVKNPVNGHAHLLYALNIAVRTAPDASVKA
                     LKYAAAVERSLCEKLCADVNYSGLICKNPFHLEWQVMEWREEAYTLDELADYLDLSASA
                     RRSIDKHYGMGRNCHLFEMTRKWAYRAIRQGWPAFSQWLDAVIQRVEMYNASLPVPLSP
                     PECRAIGKSIAKYTHRNFTPETFAQYVADTHTPEIQAARGRKGGKANSSENQSDKGKKS
                     AAVRWTANDDKRRRALDMYILGASTEDIAVAVGVSSRTIRRWMDNSGEWLTKKQIIKF"
                     /name="replication initiation protein"
     Typing          2341..3115
                     /name="Col156"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="99.613"
                     /coverage="83.0"
                     /evalue="0.0"
     Typing          335..1881
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="93.629"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 ggttttttct gcccgtatca gtgcggacaa cgttttttca tccgtcgttg ttcggttttt
       61 tttctctgcc agtaacacaa gtaatctctg ctgctctgac ggtgatttca gtccgttgat
      121 gtaggcaatt tttgcactta accactcttc acgatttgtc attcttacct ctgcattttt
      181 gccgttaatg tgagttgtta ttgtgcataa tatcaccttg tctgcctgcg tgtgagaccg
      241 taaaatcatc cctgattaat tcagggatgc gcacttagta gtttctctcc ttcgtcgaga
      301 aactgtgcgc tcctgcggag ggctaaaagg cagatggcaa gctaccattg caccgtcaaa
      361 gctggagcaa aaggcagtgc cttaaaacat gctgattaca tttccagatc cggcgaatat
      421 aagagctaca aatcgcggga ggatctggaa ttttcgtcat caggtaacat gccatcatgg
      481 gcgaagaaaa atcccgcaga gctatggaaa gccgcagatg aatttgaacg aaaaaacggg
      541 actgcatacc gtgaaattga gatcgcgtta ccgcgtgaac tgacacgcga acaacggata
      601 gaacttgttg aagatttcgt gcaaaaggaa cttggcgatc gccatgccta ccagtacgcg
      661 atccacaatc cgccaggtgc aatcgacgga aaggaacagc cacacgcgca tatcatgttt
      721 tgcgagcgga ttaatgatgg tattgaacgc gatccgcagc aattttttaa acgtgccaac
      781 agcaaatcac cagaacgggg aggcgcaaaa aaagcgagta ttccccagac agccggagag
      841 cgaaaagccg cccttgttgc gctgcgttcc cgctgggcag atgtgcagaa tgagcacctt
      901 gcgcgatacg gtcacgagtc gcgcgtagat catcgttctc tgaaagaaca gggtatcaat
      961 cgcacgccgg aagttcatct tggccccgtt caggccgcca gtctcaatgg tgagcagatt
     1021 gttgcaatcc aggaacggag gaatgccgag cgggaactca agaccgccag agatgccgca
     1081 aatgccattc agcaggaaca ggagcaaaag caaaaaatca aggcagttga gcctgttcgt
     1141 tcagcccgtt caccggagtt attgcttcag taccgcaagg ttatgaaaac ggtcattcag
     1201 ggagaagcaa ggcttgctcg tttaggggat gccaatccca atgcgctcaa agaacataag
     1261 ctgcttcaga atgcgaaagc aaaaaaagac tctctttccg aatggagcag gcgaatatat
     1321 gaaggggcac ggtatttaga caaactgggg cgtaatgtcg tttccgcaca aagggagctg
     1381 cgggagctac aggaacaacg caatgctttg aatgggattc gtggcctgtt tcggggggct
     1441 gacaaaaggg agattgatgc gcgtattctg gagcaaaaaa gtgtgctgga aaccgctgaa
     1501 catgaaagga atgaattcag gaacaagcta cagcaagccg aatccgagtg ggacaaagaa
     1561 aacgctgctt ttaagcgtac cgagggatat aagtacgttg gggatctgga caggtacaga
     1621 gaacgtgaga ttctggccgc ggcatcttta gagaatacca ggcaaaaggt tgctgaagaa
     1681 gtatccgttg cccgtagcca gatgttatct ctggagcctg aactcagtat atctggagat
     1741 gaaaaagctc aaatgcgaca tgagttactg gcagaaatgg cgcaggaacg gcagcaacag
     1801 gaggaaaagg cactgcgtat acagcgatcc tgggccaggg aggcatcacg tagtaacgaa
     1861 cgtgatcaag atatggagcg ttgaaaatgt agcaatatcg ggactgcgcc ccgaaccccg
     1921 ccaacgtttc acggaacgcg aaaaaattcc gcgtcccgtt caccgttttc tgatgagaaa
     1981 gtttgctgtt ttgacccgtt cgcccttctg aacgctcgaa acagatcgcg catcgctttc
     2041 gtgcatagtt atgcaacgct ctgaaaacga ttctgacgcg tttttctggt ttggcctggt
     2101 gttttcctgt ctttttgcgt tttttgcgtc aggaagcgac tgagggcgtt ttacggggta
     2161 cgtacaacag gagttatggt aaatggatcg ggtttgcggg aagactcgac aggttttgtc
     2221 gttgggggta gtgtaagcga ctgaaaaaca aacgcccctg aaattcgtgt ctatccgcca
     2281 agactgtcac gaaaatacag gggcgatgtc ggtcgataac ctggaaggaa tcgtaacaca
     2341 tgagcgccgc gcttcaatac ttcgaagaaa atttaccccg ccgtccctat cacacggatg
     2401 atctcgcttt tggtcttcgc atctccggca aagggcgtgc gctgcttgcg cggtacatcc
     2461 agcagaacca gcctcatgcg cagttctggc tggtttttga cgttgaccgc gagggggcag
     2521 cgattgactg gagcgaccgg aacgcccccg cgccgaacat caccgttaaa aatcctgtga
     2581 acggacacgc tcacctgctc tatgcactca atatcgccgt gagaaccgcg cctgatgcgt
     2641 cggttaaggc gctgaaatat gccgcagcgg ttgaacgttc gctgtgtgag aaactttgtg
     2701 ctgatgtgaa ctacagcgga ctgatttgca aaaatccgtt ccacctggaa tggcaggtga
     2761 tggagtggcg cgaggaagcc tataccctcg atgaactggc tgattatctc gatttgagcg
     2821 cctcagcgcg tcgtagcatc gataaacatt acgggatggg gcgaaactgc cacctgttcg
     2881 aaatgacgcg caaatgggct tacagggcga ttcgtcaggg ctggccagca ttctcacagt
     2941 ggcttgatgc cgtgattcag cgtgtcgaaa tgtacaacgc atcgcttccc gttccgcttt
     3001 ctccgcctga atgtcgggct attggcaaga gcattgcgaa atacacgcac aggaacttca
     3061 cgccggaaac tttcgcacag tatgtggctg atacgcacac gccagaaatt caggcagcac
     3121 gcggtcgcaa gggcgggaag gccaattcgt cagaaaatca gtcggacaaa gggaaaaaaa
     3181 gcgccgctgt tcggtggact gctaacgacg acaaacgtcg tagggcgctt gatatgtata
     3241 tcttgggagc gtcaacggaa gatattgcag tggcggttgg tgttagcagc cggactattc
     3301 gacgctggat ggataattct ggagaatggt taaccaagaa acaaataatt aaattttaat
     3361 taacagaaaa atgacaatta ccccctgttt ttgttaatgg gtggttaaat tcgcggacat
     3421 gaacaagcct atatcagata acagcgcctt tcggcgtctt tttgagcagc gggctttccg
     3481 gcggttttct cctgtcagcc cagcaatggt gcggcttacc gcatgattga ggtggttgtg
     3541 ctcgccgcag tctcatgacc gagcgtagcg agcgaatgag cgaggaagca ccagggaaac
     3601 ggaacgtgaa cggaggctct tacgcactgt ctttggttag tagctccttc ccgcgtcttt
     3661 cccattcctg ccattttggg tggttgcgcg gtagctctgc gattcctgcg agtgcgccta
     3721 ccagttcggc agcactaaac tttggttttc cggttttgct gtccaccagt cctgccacaa
     3781 tcatgaggcc tgcggccttg tagagttcat gatcccgcgc ctttcgttcc gcccttgcgg
     3841 ctgccttccg ttctgccgct atgattgccg ttaccctggc ttttgctgcg gctgctttct
     3901 ctgc
//
