LOCUS       NZ_CP073716             4712 bp    DNA     circular CON 11-JUN-2024
DEFINITION  Salmonella enterica subsp. enterica serovar Bovismorbificans strain
            2020LSAL11867 plasmid unnamed1, complete sequence.
ACCESSION   NZ_CP073716
VERSION     NZ_CP073716.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN18747132
            Assembly: GCF_018340585.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Bovismorbificans
  ORGANISM  Salmonella enterica subsp. enterica serovar Bovismorbificans
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4712)
  AUTHORS   Delannoy,S., Cadel-Six,S., Bonifait,L., Tran,M.-L., Cherchame,E.,
            Bauge,L., Romero,K., Rouxel,S., Thepault,A., Cordevant,C.,
            Chemaly,M., Brisabois,A. and Fach,P.
  TITLE     Closed genome sequence of a Salmonella enterica strain of serovar
            Bovismorbificans isolated from a pork-dried sausage associated with
            an outbreak in France
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4712)
  AUTHORS   Delannoy,S., Cadel-Six,S., Bonifait,L., Tran,M.-L., Cherchame,E.,
            Bauge,L., Romero,K., Rouxel,S., Thepault,A., Cordevant,C.,
            Chemaly,M., Brisabois,A. and Fach,P.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-APR-2021) Laboratory for Food Safety, French Agency
            for Food, Environmental and Occupational Health & Safety, 44 rue
            Pierre et Marie Curie, Maisons Alfort 94700, France
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 17-MAR-2021
            Assembly Method                   :: Unicycler v. MARCH-2021
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100.0x
            Sequencing Technology             :: Illumina NovaSeq; MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_018340585.1-RS_2024_06_11
            Annotation Date                   :: 06/11/2024 04:09:47
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,523
            CDSs (total)                      :: 4,402
            Genes (coding)                    :: 4,307
            CDSs (with protein)               :: 4,307
            Genes (RNA)                       :: 121
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 95
            CDSs (without protein)            :: 95
            Pseudo Genes (ambiguous residues) :: 0 of 95
            Pseudo Genes (frameshifted)       :: 41 of 95
            Pseudo Genes (incomplete)         :: 68 of 95
            Pseudo Genes (internal stop)      :: 14 of 95
            Pseudo Genes (multiple problems)  :: 24 of 95
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP073716.1.
            Bacteria and source DNA available from ANSES - Laboratory of Food
            Safety - Salmonella and Listeria Unit - 14 rue Pierre et Marie
            Curie - 94701 Maisons-Alfort Cedex FRANCE.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4712
                     /organism="Salmonella enterica subsp. enterica serovar
                     Bovismorbificans"
                     /mol_type="genomic DNA"
                     /strain="2020LSAL11867"
                     /serovar="Bovismorbificans"
                     /isolation_source="pork product"
                     /sub_species="enterica"
                     /db_xref="taxon:58097"
                     /plasmid="unnamed1"
                     /geo_loc_name="France"
                     /lat_lon="48.855976 N 2.3444382 W"
                     /collection_date="2021-02"
                     /collected_by="ANSES"
                     /note="S. 6, 8, 20: r, [i]: 1,5"
     gene            join(4602..4712,1..675)
                     /locus_tag="KCG42_RS22475"
                     /old_locus_tag="KCG42_22480"
     CDS             join(4602..4712,1..675)
                     /locus_tag="KCG42_RS22475"
                     /old_locus_tag="KCG42_22480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006115714.1"
                     /GO_function="GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA]"
                     /GO_process="GO:0006270 - DNA replication initiation
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_213147062.1"
                     /translation="MTTKQAQYALENYDAGDLERSSGDRWVTMQNSLIRAGHGLSLPEK
                     RIVMMAVSMLDSRKSYRPGDVPTTRITAAEYAALAECEMNTAYEALQDAAKQLYHRSIT
                     FYEPAHKRRGKDVEPTKVQMRWVGQVHYQKGEGWVELYWWPKLLPYLTNIKKQFTSYQL
                     KQASALRSAYSWRLLELLLRFEKTGVAEYTIEDFAVSMDATPKQRENFAAIRRKIIEPA
                     VKELNDKDGWVIQWQPIKAGRKVAKVRFTFKRDPQGRLL"
                     /name="replication initiation protein"
     gene            672..860
                     /locus_tag="KCG42_RS22480"
                     /old_locus_tag="KCG42_22485"
     CDS             672..860
                     /locus_tag="KCG42_RS22480"
                     /old_locus_tag="KCG42_22485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015472930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_213147063.1"
                     /translation="MSYFDNDDPAMIADLLDMVLWDMSRPDAHPIDDYLAELKARPDAE
                     TPEIKRAIAVLMDYMSH"
                     /name="hypothetical protein"
     gene            complement(857..2671)
                     /locus_tag="KCG42_RS22485"
                     /old_locus_tag="KCG42_22490"
     CDS             complement(857..2671)
                     /locus_tag="KCG42_RS22485"
                     /old_locus_tag="KCG42_22490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011382089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobA/MobL family protein"
                     /protein_id="WP_213147064.1"
                     /translation="MAIGRLSMKVGKAGKASAHSSYISRTGEYAKYTERGEKLEASEAG
                     NMPAWAEKNPNLFWQAADANERKNGTTYREMEIALPRELTPDQRLELVHDFIRQEIGER
                     HAYQFAIHVPTAADGGEQPHVHLMFSERQRDGIERDPDQYFKRYNGKYPERGGAKKGYG
                     EKAGQTLTRAERTAELKALRGRWEGMCNSHLEKAGHGSRIDMRSYKDQGIDLAPEKKLL
                     PSQWKDPQQRAQILEYREAKADLSKTEIVTKAILQERPHNPLEPWEKAVEKLTDKDFAP
                     HEKVKANAELKAAKELVEQGKNPLHHLSAIQQAGQQAVYNWAKESVRANAQRPKVQTPK
                     EMTPEEAQTVLKTLEADASERAKGYRQKADLKYAQLHEAIDQIDRNRKAMIKKHLDVQP
                     VRPERPRGFLADTFGIGMKAYEQKLDAWEKEHRQWSQEHIQVQRYGQDDRSALERQQRE
                     LSGYLSRNHFGQQGYKDRAYHDAARDLLATDPVRAKQVEQAKGVIDRIAKEREQARELQ
                     KDCKALGEKVYEAAKLHQKGKLKDVPPALSQVLDKVAAMPGSSRQKIEALAQDFIQVSA
                     STRADWKKALEPYQRQINRTMDRGGMSL"
                     /name="MobA/MobL family protein"
     gene            2905..3357
                     /locus_tag="KCG42_RS22490"
                     /old_locus_tag="KCG42_22495"
     CDS             2905..3357
                     /locus_tag="KCG42_RS22490"
                     /old_locus_tag="KCG42_22495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020560602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraD"
                     /protein_id="WP_213147059.1"
                     /translation="MSEKSNWIDDRVAYIRGLKSPSEQQRLLVVLFEKNGRTADDERKL
                     NALVRAEKAAERAMKAKADAARIIDAEKKAARKARDRELYQAAGLLIMAGLVDTKTGMP
                     TRDKGELLGALMALANSNLDDAKRTEWKRAGDAKIAEGMKNAKGSN"
                     /name="conjugal transfer protein TraD"
     gene            3338..3538
                     /locus_tag="KCG42_RS22495"
                     /old_locus_tag="KCG42_22500"
     CDS             3338..3538
                     /locus_tag="KCG42_RS22495"
                     /old_locus_tag="KCG42_22500"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_213147060.1"
                     /translation="MPKVQIEIDCPLTLRDLSAFVVDQNMETLSWSDVIFTLLHEHSKQ
                     VTEIQQLKNELSSYKDGFKVT"
                     /name="hypothetical protein"
     gene            4420..4605
                     /locus_tag="KCG42_RS22500"
                     /old_locus_tag="KCG42_22505"
     CDS             4420..4605
                     /locus_tag="KCG42_RS22500"
                     /old_locus_tag="KCG42_22505"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_079843555.1"
                     /translation="MFIVEEIEGPLWRVLMVKGNTCKVLLKPQDMEGYSDREDAYLNAR
                     GIANLAEDSPLVRALS"
                     /name="hypothetical protein"
ORIGIN
        1 cacggccttt ccctgcctga aaaacgcatc gttatgatgg ccgtttcgat gctggacagc
       61 cgcaagagct acaggccggg tgacgtacca acgacacgca tcaccgcggc tgaatatgca
      121 gcattggccg aatgtgagat gaacacggcc tatgaggcgt tgcaggatgc ggcaaagcag
      181 ctctatcacc gctcaatcac gttctatgaa ccagcacaca agcgacgggg caaggacgtc
      241 gaaccgacca aggtgcaaat gcgctgggtc ggccaagtcc attaccagaa gggtgaaggc
      301 tgggtggaac tgtactggtg gccgaaactg ttgccctacc tgaccaacat caaaaagcaa
      361 ttcactagct accagctcaa acaggccagc gccttacgct ctgcctactc gtggcgactg
      421 ctggaactgc tgctacgctt tgagaaaaca ggggtggccg agtacacgat tgaagatttt
      481 gccgtgtcga tggatgccac cccaaaacag cgtgagaact ttgctgcaat tcgtcggaag
      541 atcatcgagc cagccgtgaa ggagctgaac gacaaggatg gctgggtaat ccagtggcag
      601 ccgatcaagg cagggcgcaa ggttgccaag gttcgcttca ccttcaaacg agatccgcag
      661 gggcgtctgc tatgagctac ttcgacaacg acgacccagc catgattgcc gatctactgg
      721 acatggtgtt gtgggatatg agccgtcctg acgctcaccc gattgacgac tacctagcag
      781 aactcaaggc acgtcctgac gccgaaacgc cagaaatcaa gcgggctatc gctgtgctga
      841 tggactatat gagccattaa aggctcattc cgcccctgtc cattgttcgg ttgatctgcc
      901 gttggtatgg ctcaagtgcc ttcttccagt ccgccctcgt tgacgctgac acttgtatga
      961 aatcctgtgc aagggcttcg attttctgac gagaagaacc aggcatagca gccaccttgt
     1021 ccaacacctg gctaagggcg ggcgggacgt ccttcaattt gcccttttgg tgcagcttcg
     1081 cggcttcgta aaccttctcc cccaaggctt tgcagtcctt ttgcagttcg cgggcttgct
     1141 cccgttcctt ggcaatccga tcaatcacgc ctttggcttg ttcaacctgt ttggcgcgga
     1201 ctgggtcagt ggccagaaga tcacgggctg catcgtgata cgccctgtct ttgtacccct
     1261 gctgaccaaa atggtttcgg ctcaaatagc cgctgagttc tcgttgctgg cgttctaatg
     1321 cacttcggtc atcctgaccg taacgctgaa cctgtatgtg ttcctgtgac cattggcggt
     1381 gttctttctc ccatgcatcg agcttctgtt cataggcttt catgcctatc ccaaaggtat
     1441 cagcaaggaa gccccgcgga cgttctggac gcactggctg aacgtcgaga tgtttcttga
     1501 tcatggcttt gcggttgcgg tcgatctggt cgatagcttc atgcagttgg gcatacttta
     1561 aatccgcttt ctggcggtag cccttggctc tttcgctggc atcggcttcc aaggttttga
     1621 ggactgtctg cgcttcctct ggagtcattt cctttggtgt ttgaaccttc ggtctctggg
     1681 cgtttgcccg tacagattct ttcgcccagt tgtagacagc ctgttgccct gcctgctgaa
     1741 ttgctgacag atgatgcaat gggttcttgc cttgctcgac cagctcttta gctgccttca
     1801 gctcggcatt tgccttgacc ttttcgtgtg gggcaaagtc tttatcggtt aatttctcga
     1861 ccgccttttc ccaaggctcc aacgggttgt gtggacgttc ctgaagaatg gctttcgtaa
     1921 caatctcggt cttcgacaga tcggctttgg cttcccgata ttcgagaatc tgcgcccgct
     1981 gctgcgggtc tttccattgg ctcggaagca gtttcttttc aggggcaagg tcgatgcctt
     2041 ggtctttgta gctccgcatg tcgatacggc ttccatgccc tgccttctca agatggctgt
     2101 tgcacatacc ttcccatcga ccacgcaagg cttttagctc tgcggtgcgt tcggcacggg
     2161 tcagggtttg ccctgctttt tcgccatagc cttttttggc gccacctcgt tcagggtatt
     2221 tgccgttgta gcgtttgaaa tactggtcag ggtcgcgctc gataccgtcc cgctgacgtt
     2281 ctgaaaacat caggtggacg tgtggttgtt ccccgccatc ggcagcggtc ggcacatgaa
     2341 tagcaaactg gtaggcatgg cgttcgccaa tttcctgacg aataaaatca tgcaccagtt
     2401 ctaggcgttg gtcaggtgtc aattcacggg gtagggctat ctccatttct cgataggttg
     2461 tcccattttt tcgctcgttg gcatcggcag cctgccaaaa aagatttggg tttttttcag
     2521 cccatgcagg catgttcccc gcttcgctgg cttccaattt ttcaccgcgc tcggtgtact
     2581 tggcatattc accagttcgg gaaatgtaag acgagtgggc agaggctttg cctgccttcc
     2641 cgactttcat tgataaccga ccgattgcca taacgtttga gcctttttcc ttttggtgct
     2701 tttaaccgtt cggcttgccg aacgtgccat ccctgaaagg gtggctaggg gtttcaaggg
     2761 gatgtcccct tgacgtgctg tttctgcccg aagggagaaa caactaagcg cgccctgaaa
     2821 aattcaggga taacgcgcct ccttccaatc ctagcaacaa atcggctaat atggaatcat
     2881 tcgataccga ctggatgaaa gcagatgagc gagaaaagca attggattga tgatcgggtg
     2941 gcgtatatcc gtgggctaaa aagcccatcg gaacagcaac gccttttggt ggtgctgttt
     3001 gagaaaaatg gacggacggc tgacgatgag cgcaagctca atgcccttgt tcgtgcagag
     3061 aaggcagcag aacgggcaat gaaggcaaaa gccgatgctg cgcgcattat tgatgccgaa
     3121 aaaaaagcag ctcgaaaggc aagggataga gagctgtatc aggcggctgg tttgctcatc
     3181 atggcgggat tggtagacac caaaacggga atgccgacac gcgacaaagg cgagctactg
     3241 ggcgcactca tggcgctggc gaatagcaac cttgatgacg ccaaaaggac agagtggaaa
     3301 cgggcgggtg atgccaaaat cgcagagggg atgaagaatg ccaaaggttc aaattgaaat
     3361 tgattgccca ttgaccctcc gtgatctgtc agcctttgtc gttgatcaga atatggaaac
     3421 tctctcttgg tcagatgtga ttttcactct tttgcatgaa cacagcaaac aagtgacaga
     3481 gattcaacag ctcaaaaacg aactgtccag ctacaaagac ggctttaagg tcacctaaaa
     3541 acgcatagaa agcccgtaga gcgatttttt aatgctcaat gtggggaaca tagggaaata
     3601 acctaaaaac gccttagaac gcaaatgaga gcaaaataga gctattaaaa agcccaccga
     3661 agtgggctaa ctgttacttt tgcgctgaaa cagtttgttt gattactaat ttttgtgaat
     3721 tagtacgtga ataatacggc aatttcacag aaaccatcaa tgcttatttg ttaaattttc
     3781 taaacaatac atggtcttat agagcgagtg tctacgagcg aactagcaaa tttcgccctt
     3841 cccccctccc tgattaccgc tttttacctt tttcgaacct agacaacatc cggactaaac
     3901 cggcttttgc tcctagatcg agcgaagcga gcaaaaaagc tctatgagcg aagcgaattc
     3961 atagtcgctt ttgcttttga tgaatcctgc cccgtcagta gccaaaaaat gcccctccga
     4021 ccgagcgaag cgaggtcaca atgtcacgag cgaagcgagt gccatagggc atttttcatg
     4081 actgccgaaa gtggacttac ccacaggctg gcgaccccca ataggttttt attcttgttt
     4141 tttcttgttt atttaaggga aatcccgctt taaaaacaaa gacttgcaaa ggcgaaatgt
     4201 gccttttacc gagtttaatg tgccttttac cgagctattg tgtcttttgg cgagtgcttt
     4261 ccacaggctg ccagttacaa acgtgccaca aaaaaaatat ggcacatttc gcgaaatgtg
     4321 cctatatttt cactaggcac attaactcgg aagttggcac aattgaacat cccagaccta
     4381 accccagaag aacgagagca cattgccaaa ggtggacgtg tgttcatcgt cgaagagatc
     4441 gaagggcctc tttggcgagt gctcatggtg aaaggcaaca cctgcaaggt gctgctcaaa
     4501 cctcaagata tggaaggcta ttccgaccga gaggatgcct acctaaacgc tagaggaatc
     4561 gccaatctag cagaggacag ccccttggtg agggcgctgt catgacaaca aaacaagctc
     4621 aatacgcact agaaaactac gatgcaggcg atctagaacg ctctagcgga gatcgttggg
     4681 tcaccatgca gaactcgttg atacgggcag gg
//
