LOCUS       NZ_CP073629             3991 bp    DNA     circular CON 10-JAN-2024
DEFINITION  Klebsiella pneumoniae isolate KP_NORM_BLD_2012_85054 plasmid
            unnamed2, complete sequence.
ACCESSION   NZ_CP073629
VERSION     NZ_CP073629.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA4724625
            Assembly: GCF_019797985.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 3991)
  AUTHORS   Fostervold,A., Hetland,M.A.K., Samuelsen,O., Sundsfjord,A.,
            Simonsen,G.S., Bernhoff,E., Bakksjo,R., Wyres,K.L., Holt,K.E. and
            Lohr,I.H.
  TITLE     A nationwide genomic study of clinical Klebsiella pneumoniae
            isolates in Norway 2001-2015: ST307
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3991)
  AUTHORS   Fostervold,A., Hetland,M.A.K., Samuelsen,O., Sundsfjord,A.,
            Simonsen,G.S., Bernhoff,E., Bakksjo,R., Wyres,K.L., Holt,K.E. and
            Lohr,I.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-APR-2021) Department of Medical Microbiology,
            Stavanger University Hospital, Gerd Ragna Bloch Thorsens gate 8,
            Stavanger 4011, Norway
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: SPAdes v. 3.13.0
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 50.0x
            Sequencing Technology             :: Illumina MiSeq; Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/10/2024 03:41:23
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,378
            CDSs (total)                      :: 5,254
            Genes (coding)                    :: 5,135
            CDSs (with protein)               :: 5,135
            Genes (RNA)                       :: 124
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 13
            Pseudo Genes (total)              :: 119
            CDSs (without protein)            :: 119
            Pseudo Genes (ambiguous residues) :: 0 of 119
            Pseudo Genes (frameshifted)       :: 54 of 119
            Pseudo Genes (incomplete)         :: 67 of 119
            Pseudo Genes (internal stop)      :: 17 of 119
            Pseudo Genes (multiple problems)  :: 16 of 119
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP073629.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3991
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /isolate="KP_NORM_BLD_2012_85054"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="unnamed2"
                     /geo_loc_name="Norway"
                     /collection_date="2012"
     gene            complement(583..1005)
                     /locus_tag="KD921_RS26770"
                     /old_locus_tag="KD921_26755"
     CDS             complement(583..1005)
                     /locus_tag="KD921_RS26770"
                     /old_locus_tag="KD921_26755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005229777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_040214596.1"
                     /translation="MAIVSISEAARLVKVSRPTIYKMINSGKLSYTSVVKHGKAIKVID
                     TSELIRVFGSLDGVIDTVKYDVKSDAESTGINSVGLHDLQHRIALLEAENDGLKGAVKA
                     RDEHIDSLRQAMQLLEHKHEPSSPPHSPWWKFWKKS"
                     /name="helix-turn-helix domain-containing protein"
     gene            complement(1005..1196)
                     /locus_tag="KD921_RS26775"
                     /old_locus_tag="KD921_26760"
     CDS             complement(1005..1196)
                     /locus_tag="KD921_RS26775"
                     /old_locus_tag="KD921_26760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000166328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_040198051.1"
                     /translation="MTKQQKTALNMAKFIQNQSLLLLDKLNELDLDVEADLCEKLHDDA
                     EHLFRTLSSRLDELQDGN"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            1604..1716
                     /locus_tag="KD921_RS26955"
                     /pseudo=""
     CDS             1604..1716
                     /locus_tag="KD921_RS26955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005761324.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /name="replication initiation protein"
     gene            complement(1943..2917)
                     /locus_tag="KD921_RS26780"
                     /old_locus_tag="KD921_26765"
     CDS             complement(1943..2917)
                     /locus_tag="KD921_RS26780"
                     /old_locus_tag="KD921_26765"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_114269875.1"
                     /translation="MAFFNLLFVASLICFGGVMGSYSRGCRDSQNKFSKDKDENNKRAS
                     VYRFGIASAFICVPFISSFLHVDYSSIIFPVADGGGTKFIEQILLLISVSGISAYLGYA
                     LLDGLANKVLKEQVDGIDKKQQDLEAEQDEFKDELDRSKELIEQLEMDKKTTKFELGYF
                     KAISAVDKAESMMSIPDEALSVKKKLTEALDAVTESLSLVKREDVAKDDYDKLLVLKAY
                     ILKRLDRIDDALSITDELLMSNEDNPILIYNKACYQYILRRCQADNSDIKDMIRRALTI
                     KVTDPEFIRRQEKIRTKVIGNKDNDLEGLFTDAELEELKVAIK"
                     /name="hypothetical protein"
     gene            complement(3498..3770)
                     /locus_tag="KD921_RS26785"
                     /old_locus_tag="KD921_26770"
     CDS             complement(3498..3770)
                     /locus_tag="KD921_RS26785"
                     /old_locus_tag="KD921_26770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004897311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_019405140.1"
                     /translation="MATDAQVKEINALIKKYPDSCSICHEVYDEDDVTYTVFGYDRKGK
                     IQVTTGCCAGMLTEPVLLGVCGCFDPEERDEIMQNHPMAKQFFTE"
                     /name="hypothetical protein"
     Typing          1245..1716
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="86.885"
                     /coverage="92.0"
                     /evalue="7.8799999999999974e-146"
ORIGIN
        1 tgtctgggga tttcagcctg aattcaggcc aggcaactca aaacccgcac caaaccagac
       61 tgaaaacggt gaacgggtgc gcaatttatt gcgtggccgt gaagcgttgc cggcgcagcc
      121 ggaaaaccgg ttttcagcac gttcaggaat cgggtttgtc gagaccagca atcacattat
      181 ggcaagtcgc cggacgactc accacacgat tcaccggcga ttcgactcgt gacttgactc
      241 tagagtcgcc atggtcaaaa agccaccaac ccggcaagtc gactctagag tcaagtcatc
      301 ataacgtact gattatatgg cgtgattcac atatgaatcg tgggcaagtc atcggcgatt
      361 cgccatagag tcgtccacga ctcggattca ccttacaaaa aataaaattg cgtaatttaa
      421 aatagataac tgattgaaaa taaaggtcta tctgcaaaat tttaattttg cgtagtgtgt
      481 gggtattttt agtggtgagg agcgttcagg gatctgacga tttttgggaa ggttcaggaa
      541 ctccccggaa tggccggaga gcaaaatgga agcatggcgg gatcaggatt ttttccagaa
      601 tttccaccac ggggaatggg gtggtgaaga aggttcgtgc ttgtgctcca gaagctgcat
      661 agcctgacga agggaatcaa tatgctcatc tcgagcctta acagcccctt taagaccatc
      721 gttttcagct tcaagtaaag cgattctatg ttgtaaatca tgtaaaccaa cgctgttaat
      781 acctgtagat tctgcgtcac tttttacatc atattttaca gtatcgatta caccatcaag
      841 agaaccaaac actctaatta gctctgaagt atcaataact ttaatagctt tcccgtgctt
      901 taccacagag gtgtaactta acttcccact gttaatcatc ttgtaaattg tggggcgact
      961 aaccttaaca agccgtgccg cttcactaat agacactatg gccatcagtt accatcctgt
     1021 aattcatcca gtctcgagga cagtgtacgg aaaagatgct ccgcatcatc atggagtttc
     1081 tcacaaaggt cggcctcgac atcgagatca agctcgttaa gcttatccag caggagcaga
     1141 gactgattct ggatgaattt agccatgttc agcgctgttt tctgttgttt tgtcataaga
     1201 agcctcagag cgtcagtgct caatgtcaaa ctagtctctt ttccgcttcc tcgctcactc
     1261 agtcgctacg ctccagccgt tcggctgcgg cgagcggctg gagcgtgtac ataaaaacgt
     1321 aggcaaccaa gatatgaggc agaaaagcaa aggccgccga acggctgttt ttccataggc
     1381 tccgcccccc tgacaagcat cgcggaaacg gacgctcaaa tcagtggtgg cgaaacccga
     1441 caggacttaa agataccagg cgtttccccc tggtggctcc ctcgtgcgct ctcctgttcc
     1501 tgcctttcgg tttaccggtg tcattccgct gttatggccg cgttttctca ttccatgcct
     1561 gatactcggc tccgggaagg cagttcgctc caagctggac tgtatgcacg aaccccccgt
     1621 tcagtccgac tgctgcgccc gttccagtaa ctatctcttg agtccaaccc ggaaagacac
     1681 gacttatcgc cattggcagc agccactggt aattgattta gaggagttag tcttgaagtt
     1741 atgcgccagt taaggctaaa ctaaacgaac tgttttggtg actgcgctcc tctaagccag
     1801 ttacctcggt tcagaaactt gccggttact gaaccttcga aaaaccacct tgccgggtgg
     1861 ttttttcgtt tgaggggtag agtacgctgc acctcaaagg atcgtcaagg atctttttgg
     1921 aattcataga gctagccact gcctatttga tagccacctt taattcctcc agctcagcgt
     1981 cagtaaacaa cccttcaaga tcattatctt tatttcctat gaccttggtt cttatttttt
     2041 cttgcctgcg aatgaattca ggatctgtaa ctttaatagt cagagccctg cgaatcatat
     2101 ccttaatatc ggagttatca gcttggcaac gacgcaaaat atattgatag caagccttat
     2161 tgtaaataag tatagggtta tcctcattac tcataagtaa ctcatccgta attgacagag
     2221 catcatcaat acgatcaagt cttttcaaaa tataagcttt aagcactaag agcttgtcgt
     2281 agtcatcctt agctacatcc tctcttttaa caagagacaa tgattccgtt acagcatcta
     2341 atgcctcagt tagttttttc ttaacagaaa gagcctcatc cggaatggac atcattgatt
     2401 ctgctttatc cacagctgaa atggctttaa agtatcctag ctcgaatttt gttgttttct
     2461 tatccatttc aagctgttct atcagctcct tgctcctatc aagctcatct ttaaactcat
     2521 cttgttcagc ctccaaatct tgttgctttt tatctatacc gtctacttgc tcttttaata
     2581 ctttgttggc aagaccatcc agtaatgcgt acccaagata cgcagagatc cccgaaacag
     2641 aaataagaag caatatttgt tctatgaact tagttccacc accatcagcc acaggaaata
     2701 ttatacttga gtaatcaaca tgaagaaatg atgatatgaa aggaacacaa ataaatgcgg
     2761 atgctatacc aaatctataa acactagctc ttttattatt ctcatcctta tcttttgaaa
     2821 atttattttg ggagtctcgg caacctctgg aatagctccc cataacacca ccaaaacaaa
     2881 ttagagatgc aacaaacaat aggttaaaaa aagccatgag agaatccttg cgcaaagcaa
     2941 acaataaaac tttgttcagg taagttaaga taagctcaat catatactaa ccaataacaa
     3001 aaaaggcagc cttggctgcc tttttctgct gacttgacac ttacaagtct ggacgctcat
     3061 cgtgaagttt gatttttttc atagagcacc tctcattaat tgttcctttg caagcccatg
     3121 cttgcttagc gctgaatata gggcataaac ccagcactca caacaacaaa aatgcttaaa
     3181 atgataaaat caacccatgt attgacattg ggtgaaaaaa aaagtataat gcactggtag
     3241 ccaaaggggc ggggcttcgc ttattcctta ggaataagcg aagccccgcc cctttggcta
     3301 ccataattaa atgattgaat ttaaaggatt tttttacaat aacatccttc ctctcaatag
     3361 tcatataaac atgccccatg tattcgtcat tctggatttt tcaaaagaat gaatgcgtgc
     3421 atttaccata acgcctcatt tcacgcagat atgaaaaagc ccgcacaagg cgggcttcag
     3481 actcaacaga tacggaatca ctctgtgaaa aactgctttg ccatggggtg attctgcatg
     3541 atctcgtcac gttcttccgg gtcaaagcac ccacagacac ccagcagaac cggctctgtc
     3601 agcattccgg cacagcatcc cgtggtgacc tgtattttac ctttccggtc atacccaaaa
     3661 acggtgtagg tcacatcatc ctcatcatag acttcatgac agatggagca tgagtccggg
     3721 tattttttga tgagtgcatt aatttctttt acctgagcgt cagtagccaa aacatctccc
     3781 tgagtcactg attatcacaa tccgctgact ctaacacaga ctcaggcatc cgccgttgat
     3841 ttaccataac gtcccattac acgcaccgct aaaacggcct cagaacgatt ctggggcgta
     3901 acccattaaa tcctacgtct taccccctga aaacgcctca aaatcgctcc agggcgtttt
     3961 acgggcatga atcgttatgc acttgactga c
//
