LOCUS       NZ_CP072472             2113 bp    DNA     circular CON 05-JAN-2024
DEFINITION  Klebsiella quasipneumoniae strain B6885 plasmid p4B6885, complete
            sequence.
ACCESSION   NZ_CP072472
VERSION     NZ_CP072472.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN18478622
            Assembly: GCF_017743035.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella quasipneumoniae
  ORGANISM  Klebsiella quasipneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 2113)
  AUTHORS   Veeraraghavan,B., Varghese,G.M. and Vijayakumar,S.
  TITLE     Complete genome sequencing of K. quasipneumoniae
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2113)
  AUTHORS   Veeraraghavan,B., Varghese,G.M. and Vijayakumar,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAR-2021) Clinical Microbiology, Christian Medical
            College, Ida Scudder road, Vellore 632004, India
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method :: Canu v. 1.8; Unicycler Hybrid v. 0.4.7
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 93.65x
            Sequencing Technology             :: Illumina; Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/05/2024 07:57:29
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,462
            CDSs (total)                      :: 5,333
            Genes (coding)                    :: 5,210
            CDSs (with protein)               :: 5,210
            Genes (RNA)                       :: 129
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 88
            ncRNAs                            :: 16
            Pseudo Genes (total)              :: 123
            CDSs (without protein)            :: 123
            Pseudo Genes (ambiguous residues) :: 0 of 123
            Pseudo Genes (frameshifted)       :: 52 of 123
            Pseudo Genes (incomplete)         :: 70 of 123
            Pseudo Genes (internal stop)      :: 31 of 123
            Pseudo Genes (multiple problems)  :: 25 of 123
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP072472.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2113
                     /organism="Klebsiella quasipneumoniae"
                     /mol_type="genomic DNA"
                     /strain="B6885"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:1463165"
                     /plasmid="p4B6885"
                     /geo_loc_name="India: Vellore"
                     /lat_lon="12.9246 N 79.1348 E"
                     /collection_date="2015"
                     /collected_by="Christian Medical College"
     gene            join(1521..2113,1..373)
                     /locus_tag="J6315_RS27190"
                     /old_locus_tag="J6315_27185"
     CDS             join(1521..2113,1..373)
                     /locus_tag="J6315_RS27190"
                     /old_locus_tag="J6315_27185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012421200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_001287824.1"
                     /translation="MSEDKFLSDYSPRDAVWDTQRTLTDSVGGIYQTAAEFERYALRMA
                     SCSGLLRFGWSTIMETGETRLRLRSAQFCRVRHCPVCQWRRTLMWQARFYQALPKIVVD
                     YPSSRWLFLTLTVRNCEIGELGTVLTAMNAAFKRMEKRKELSPVQGWIRATEVTRGKDG
                     SAHPHFHCLLMVQPSWFKGKNYVKHERWVELWRDCLRVNYEPNIDIRAVKTKTGEVVAN
                     VAEQLQSAVAETLKYSVKPEDMANDPEWFLELTRQLHKRRFISTGGALKNVLQLDRETN
                     EDLVIADDVGDGTDDGKRTAFVWDSGKRRYKRAPEKDKSD"
                     /name="protein rep"
     gene            377..643
                     /locus_tag="J6315_RS27195"
                     /old_locus_tag="J6315_27190"
     CDS             377..643
                     /locus_tag="J6315_RS27195"
                     /old_locus_tag="J6315_27190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001024536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001024536.1"
                     /translation="MNINIEYLNGNKTIGLFFLRSEAVIPDRFKNLILLIDGLSFGTFG
                     FHPHEGFEDELILYIQKTNERVKTLFVKIDLNGIKFGFLRTHS"
                     /name="hypothetical protein"
     Typing          1915..2113
                     /name="Col(BS512)"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="4.53e-100"
ORIGIN
        1 cttgcgggtg aactatgagc cgaatatcga tattcgggca gtaaaaacta agacaggtga
       61 ggttgtggcc aacgttgccg agcaactgca aagcgcggtt gctgaaacgc tgaaatactc
      121 cgttaaaccg gaagatatgg caaacgatcc tgagtggttt cttgagctga cgcggcagct
      181 tcacaagcgc cgttttatct cgaccggtgg ggcgctaaaa aacgtcctcc agttggatcg
      241 agaaaccaat gaggatcttg tcattgccga cgatgtaggg gatggcactg atgacgggaa
      301 gcggacggcg tttgtctggg attcaggtaa acggcgttac aaacgcgccc ctgagaagga
      361 taaatcggat taacgtatga atattaatat tgaatacctg aatggaaata agactattgg
      421 tttatttttt ttaagaagtg aagcggtgat tcctgacagg tttaaaaacc ttattttgct
      481 tattgatgga ttaagttttg gcacatttgg ttttcatccg cacgaaggtt ttgaggatga
      541 attaatttta tatattcaga aaacaaacga gagggtaaaa actctttttg tgaaaataga
      601 tttaaacggt atcaagtttg gatttttaag aacgcattct tagttctgga aaagagccag
      661 cggcaggctg aggtgatagg tacgagattg catgcaatct ctagtgctct gtctatcctg
      721 cattatcctc agcattatcc tcagcattat cctcagcatt atcctcagcc ttgccaactc
      781 gacaccaatg caggatagac aatccgatgt caaatgttaa cactctgcga gtggtacatt
      841 ttccccggat tatcgtcctg agcctgccgc tggctctctt tctaccgcct cgctttgctc
      901 gttgctcaac gcctcacaga cacggattaa aatccgcatc cgttcaccgt tttttaaagt
      961 ccgttaaaag catgatgcca tctccgagag ttaatctcgt caaatgctaa atcgtggggg
     1021 tcccctttgg ggttccgatt tagtgattga cgacaccacc gattaaaaaa cttatgcggg
     1081 gtggatggtt tcacgaagtg aggccatcca cctgtaagac agggttttgt ttttattccc
     1141 tgttttggtg atcgggtgtg tggaaaaggt tggggtaagc cgttcggggg tgcttgtttt
     1201 ggggggttaa aattgtggtt attttttgcg caattctcgc gcgtgatcct tgtatttata
     1261 cttaagggat aaatggcgga tatgaaatag tggtttagcc cagtaatgac gaggctttga
     1321 gtgggttttg acaggtcaaa gaaaatggag cagaattgag gcgtttttaa tcggcgttgg
     1381 ggagtgcgtc aacactcccc aacatttcga atgtgtcacc tcagcggcaa actctggtga
     1441 catgtactgg ctcgcaatgc acaggtacgt gatgaatata ccacatcaaa tcacagcctg
     1501 cccagatcgg agcaggctta atgtcagaag ataaattcct ttcggactac agcccccgtg
     1561 atgcagtttg ggatacccag cgcacgctta ccgattctgt cgggggtatc taccagactg
     1621 ctgctgaatt cgagcgctat gcactccgta tggcctcctg tagcggtttg ttacgttttg
     1681 gttggtctac catcatggaa accggagaaa cgcgcctacg gcttcgtagt gcgcaatttt
     1741 gccgtgtccg tcattgccct gtctgccagt ggagaagaac cctcatgtgg caagcccgtt
     1801 tttatcaggc tctaccgaaa atcgttgtgg attacccgtc ttcccgatgg ttgtttctga
     1861 cgttaactgt caggaactgc gagataggtg aacttggaac agtccttaca gcaatgaatg
     1921 cggcgtttaa gcgaatggaa aagcgaaagg agctatcacc tgttcagggg tggatcaggg
     1981 ctacggaggt gacgcgaggt aaggatggca gcgcacatcc gcattttcac tgtctgctga
     2041 tggtgcaacc ttcttggttt aaagggaaga actacgttaa gcacgaacgt tgggtagaac
     2101 tctggcgcga ttg
//
