LOCUS       NZ_CP072471             4991 bp    DNA     circular CON 05-JAN-2024
DEFINITION  Klebsiella quasipneumoniae strain B6885 plasmid p3B6885, complete
            sequence.
ACCESSION   NZ_CP072471
VERSION     NZ_CP072471.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN18478622
            Assembly: GCF_017743035.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella quasipneumoniae
  ORGANISM  Klebsiella quasipneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 4991)
  AUTHORS   Veeraraghavan,B., Varghese,G.M. and Vijayakumar,S.
  TITLE     Complete genome sequencing of K. quasipneumoniae
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4991)
  AUTHORS   Veeraraghavan,B., Varghese,G.M. and Vijayakumar,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAR-2021) Clinical Microbiology, Christian Medical
            College, Ida Scudder road, Vellore 632004, India
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method :: Canu v. 1.8; Unicycler Hybrid v. 0.4.7
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 93.65x
            Sequencing Technology             :: Illumina; Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/05/2024 07:57:29
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,462
            CDSs (total)                      :: 5,333
            Genes (coding)                    :: 5,210
            CDSs (with protein)               :: 5,210
            Genes (RNA)                       :: 129
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 88
            ncRNAs                            :: 16
            Pseudo Genes (total)              :: 123
            CDSs (without protein)            :: 123
            Pseudo Genes (ambiguous residues) :: 0 of 123
            Pseudo Genes (frameshifted)       :: 52 of 123
            Pseudo Genes (incomplete)         :: 70 of 123
            Pseudo Genes (internal stop)      :: 31 of 123
            Pseudo Genes (multiple problems)  :: 25 of 123
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP072471.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4991
                     /organism="Klebsiella quasipneumoniae"
                     /mol_type="genomic DNA"
                     /strain="B6885"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:1463165"
                     /plasmid="p3B6885"
                     /geo_loc_name="India: Vellore"
                     /lat_lon="12.9246 N 79.1348 E"
                     /collection_date="2015"
                     /collected_by="Christian Medical College"
     gene            299..703
                     /locus_tag="J6315_RS27160"
                     /old_locus_tag="J6315_27155"
     CDS             299..703
                     /locus_tag="J6315_RS27160"
                     /old_locus_tag="J6315_27155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016529521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2251 domain-containing protein"
                     /protein_id="WP_008321396.1"
                     /translation="MTILVTIQAQLVVGEEQVIKSLAPEGMLAAVFEDDGRTGYFYALD
                     ESVEGNPIMDAVHIYNAEDVSDGHIPSDVKIGWSEDSQKCVLLINGYPHGAFDFVGKNG
                     YCRSGYPPPINKVWSLSGHEWSDSVDDFFR"
                     /name="DUF2251 domain-containing protein"
     gene            complement(797..1228)
                     /locus_tag="J6315_RS27165"
                     /old_locus_tag="J6315_27160"
     CDS             complement(797..1228)
                     /locus_tag="J6315_RS27165"
                     /old_locus_tag="J6315_27160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001025244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6530 family protein"
                     /protein_id="WP_042109831.1"
                     /translation="MKIPAHLKHKPIIQVENYDRIDGPHADDTDAMGLSVGIAQWNTPG
                     WTELSAKVWRNTGEKWSRQSEELPLHRVIDLATLICITMDYSKNGRLSSSDDFPVTRST
                     DNPELAHHTEFMKKELKQNKSNLDVSLKRLSTELKRLGY"
                     /name="DUF6530 family protein"
     gene            1646..1903
                     /locus_tag="J6315_RS27170"
                     /old_locus_tag="J6315_27165"
     CDS             1646..1903
                     /locus_tag="J6315_RS27170"
                     /old_locus_tag="J6315_27165"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_042109830.1"
                     /translation="MGSNNNQNKDLQDKQADLLDQTYTLGWMDGYAEGYDDAIEDTQNA
                     LNKLENENELLTEVVESKDNVIKELASSAGRALQAVKKNK"
                     /name="hypothetical protein"
     gene            complement(1933..2991)
                     /locus_tag="J6315_RS27175"
                     /old_locus_tag="J6315_27170"
     CDS             complement(1933..2991)
                     /locus_tag="J6315_RS27175"
                     /old_locus_tag="J6315_27170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012508929.1"
                     /GO_function="GO:0005524 - ATP binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParA family protein"
                     /protein_id="WP_042109829.1"
                     /translation="MAIYAVWNNKGGVGKSYLTFQLASEYARQNPTKKVLVVDLCPQAN
                     SSSMLLGGMINGENTLNQIHSAIQRKTISGYIEDRIRSPYIPTNTGSSYVINVSTHNSK
                     VPNNLYLVTGDEQLELQASRVVGASFPGPHDAWRTVHLWINDLISDICNSWNNEDSCVF
                     IDCNPSFSIYTELALTAAERLLIPFSADGSSKRAVKAVLSLVYGERRHQNEPQSDFYLN
                     SNRYSMSLPQIYMYVGNRLTQMNNSSASAFKTVVTEIGDEIWKVWQTKPSLFCIHPNGS
                     STPNNKRSFRNMFQYEVNDANTASVVSGALGIPIATLTAGNKTVSGKIIKVNQTQLDKQ
                     VPNIVALAGMIE"
                     /name="ParA family protein"
     gene            complement(3321..3487)
                     /locus_tag="J6315_RS27525"
                     /pseudo=""
     CDS             complement(3321..3487)
                     /locus_tag="J6315_RS27525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001505258.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /name="replication initiation protein"
     gene            3903..4094
                     /locus_tag="J6315_RS27180"
                     /old_locus_tag="J6315_27175"
     CDS             3903..4094
                     /locus_tag="J6315_RS27180"
                     /old_locus_tag="J6315_27175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000166328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_032489493.1"
                     /translation="MTKQQKTALNMAKFIQHQSLLLLEKLNELDLDVEADLCEKLHDDA
                     EHLFRTLSSRLDALQDGN"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            4094..4495
                     /locus_tag="J6315_RS27185"
                     /old_locus_tag="J6315_27180"
     CDS             4094..4495
                     /locus_tag="J6315_RS27185"
                     /old_locus_tag="J6315_27180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009310048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_032489494.1"
                     /translation="MARVSISEAARLTGKSRTTLHRLIKAGDLSTCSGERNAKMVDTSE
                     LLRVFGPFEQLKGEHHSGQVSEQRDTASVDQCEQVIRHLKQEIEHLNTLLLSKDSHIDS
                     LKQAMLLLENHQAKLTESPAPWWKFWKKS"
                     /name="helix-turn-helix domain-containing protein"
     Typing          complement(3380..3782)
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="92.857"
                     /coverage="99.0"
                     /evalue="7.72e-165"
ORIGIN
        1 taaattgcgt ccccgttcac cgttttcgga tgggaagaac gccggaaaca ggacttaccc
       61 tgtctgaatg gcgtgaatat tcgcgctatg cacttgcgtg catactcatg catgccataa
      121 aaacagagcc tgcgcgtttc tggcgggttt tcgggtggtt tgttgcctgt tttaccggtt
      181 tcccgtcaga aacgccctca gcgcgtttct gacgatgctg ataacggatg ttatggtaaa
      241 ttatccgctt gtctgaaagc tggctgccga agcaaccaag gaaaggagaa cagacctgat
      301 gaccatttta gtgacgatac aggcccagct cgttgtcggg gaggaacagg ttataaagag
      361 cctcgctcct gagggcatgc tggccgccgt gttcgaagac gatggccgga ccgggtattt
      421 ctatgcgctc gatgagtccg tcgagggaaa cccgattatg gacgcagtac acatctacaa
      481 tgccgaagac gtttcagacg gtcacattcc ttctgatgtt aaaattggct ggtcagaaga
      541 cagtcagaag tgcgtactcc tgatcaatgg atacccgcac ggggcattcg atttcgtggg
      601 aaaaaacggg tactgcagga gtggttatcc tccccctata aacaaggtgt ggtctctttc
      661 cgggcatgag tggagcgact ctgtggatga ttttttccgg tgaattacgg caggctatag
      721 cctgccatta tggttcgaaa aacggatgtt atggtaaatt cgtctgtgaa gtaggtagac
      781 atttctaaag ctagttttaa tagccaagtc tcttcaattc agtcgagagg cgtttgaggc
      841 ttacatcaag attgctttta ttttgtttta actctttttt cataaactca gtgtgatgtg
      901 ctagctcagg gttatcagtt gagcgagtca cgggaaaatc atcactggat gaaagtcgcc
      961 catttttact gtagtccatg gtgatacaga tcagagttgc aaggtcgatt acccggtgaa
     1021 gaggcagctc ttctgattgt cttgaccatt tttctcctgt gtttcgccaa acctttgccg
     1081 aaagctcagt ccatccagga gtgttccatt gagcaatacc tacagatagc cccatagcat
     1141 cagtgtcatc ggcatgtggg ccgtcaatgc ggtcgtaatt ttcgacttga ataattggtt
     1201 tatgcttcaa atgcgcgggt attttcatca gttcgtcctt aggtaatgtt tgtgattatt
     1261 aaattacatt gtttttctaa ttataaaact cactaaatgt aagtaaatat taatatctat
     1321 tgttatcatg tgcttgtgat tttgtttttc caattttatg ttttttgctt ggagagtagc
     1381 ggtgtttttt tgtgtcaagt gttatgataa gccgtacgtt ttttttctgg tttatagttc
     1441 ggttattcac agcaatgggc gtggttttct atgactacag ataacgttag gaatattggc
     1501 gactataaaa agaaagatgt cggggtggat gctgactgta atccagtctc aggaaacaca
     1561 ccaccagtca gactaagtga gaaacttaga aatggaattc ctcctggttt gaaaactcag
     1621 atgcgccaac aaatgaggaa aaaacatggg ctctaacaat aatcagaata aagatctgca
     1681 ggataagcaa gctgatcttt tggaccaaac gtatactctt ggttggatgg atggctatgc
     1741 cgaagggtat gatgatgcta ttgaagatac tcagaacgct ttgaataaac tggaaaacga
     1801 aaacgagttg cttactgagg ttgttgaaag taaagataat gtaatcaaag agttggcctc
     1861 tagtgctggc agggcgctgc aagcagtaaa gaaaaacaaa taaaaaaagg cccttttaag
     1921 ggccttgcta ttttattcga tcataccagc gagagctaca atgttgggga cttgtttatc
     1981 tagctgcgtc tgattaacct ttattatttt tcctgaaaca gttttatttc ctgcagttaa
     2041 tgtcgcgatt ggaataccta aggctccaga tacgacagat gctgtgtttg catcatttac
     2101 ttcatactga aacatattcc tgaaagatct tttattattt ggcgttgagc tcccatttgg
     2161 gtgaatacaa aacagacttg gttttgtttg ccatactttc caaatttcat caccaatttc
     2221 ggttactacc gtcttaaatg cactggcaga tgaattgttc atttgcgtta atctatttcc
     2281 aacatacata tatatttgtg gtagcgacat agaataacga ttgctattaa gatagaaatc
     2341 tgattgtggt tcattctgat ggcgacgctc accataaact aaagaaagta cagccttaac
     2401 tgctctcttt gatgaaccat cggcagagaa aggaattaaa aggcgctctg ctgcggttaa
     2461 agctaactct gtataaatag agaagctagg gttgcagtca atgaatacgc agctatcttc
     2521 attattccat gagttgcaaa tgtcactgat taaatcatta atccagaggt gaacagtacg
     2581 ccatgcatca tggggacctg gaaatgatgc cccaacaact cttgatgctt ggagttctaa
     2641 ttgttcatcg ccagtgacaa gatatagatt atttggaact ttactattgt gtgtagatac
     2701 atttattaca tagctagaac cagtgttggt aggaatatat ggacttctga tcctatcctc
     2761 aatatatcca gatattgtct ttctctgtat tgctgaatga atctggttta gtgtgttttc
     2821 gccatttatc attccaccaa gtaacataga ggacgagttc gcttgtgggc acaggtcaac
     2881 caccaggacc tttttagtag ggttctgtct ggcatattca gaggctaact gaaaagtaag
     2941 gtaacttttc cctacaccac ccttgttatt ccatacggca tagatcgcca tctataactc
     3001 ctaatctagt tttgttgtta gcttagattc agggtactag agattattgt tctactgtta
     3061 gtttctttca gctgactgcc tttttttgga acgatattca gtcgaagggg ttggctggct
     3121 caccatgact tatctggagt tgtcgaattc cgattaaaag gatcttcttg agatcctaac
     3181 ctgcgggatg taatcttttg ctctgtaaac gaaaaaacca cctggggagg tggtttttcg
     3241 aaggatcagt aagttgggga acttctgaac cgtggtaaca gggtgtacaa gaccgctgcc
     3301 accaaatctg tcctttcagt ttagctgtag ttaggctgta acttcaagaa ctctgcacca
     3361 gtaattcttg tacacccctt accagtggct gctgccagtg gcgttttgtc gtgccttccg
     3421 ggttggactc aagtcgaaag ttaccggaac aggcgcagca gtcggactga acggggggtt
     3481 cgtgcataca gtccagcttg gagcgaactg cctacccgga actgagtgtc aggcgtggaa
     3541 tgagacaaac gcggccataa cagcggaatg acaccggtaa accgaaaggc aggaacagga
     3601 gagcgcacga gggagccatc agggggaaac gcctgatatc tttatagtcc tgtcgggttt
     3661 cgccaccact gatttgagcg tccgtttctg tgatgcttgt caggggggcg gagcctatgg
     3721 aaaaacggcc gctgtgcggc cttccctttt ctaaattacg tgatcgctcg gttttctcga
     3781 gctttcatac gcatgctcct gccgctcgcc gcagccgaac ggcaggagcg tagcgactga
     3841 gtgagcgagg aagcggaaaa gagaacatcc ctacactgag cactgacgct ctgaggcctc
     3901 ttatgacgaa acaacagaaa acagcgctga acatggctaa attcatccag catcaatctc
     3961 tgctcctgct ggagaagctt aacgagcttg atcttgatgt cgaggccgac ctttgtgaga
     4021 aactccacga tgatgcggag catcttttcc gtacactgtc ctcgagactg gatgcattac
     4081 aggatggtaa ctgatggcca gagtgtctat tagtgaggca gcccgactga cgggtaagag
     4141 tagaacaaca ctgcacaggt taattaaagc aggtgacctg tccacctgta gcggtgagcg
     4201 caatgcaaaa atggtagata cttcagagct tttacgtgtc tttggtccct ttgaacaact
     4261 gaagggtgaa caccattctg gacaggtctc tgaacagcgc gatacagcct ctgttgacca
     4321 gtgtgaacag gtgattcgtc atctgaaaca ggagattgaa cacctgaaca ctttactttt
     4381 gtccaaagat tcgcacattg acagcctgaa acaggccatg ctccttcttg aaaatcacca
     4441 ggcaaaatta actgaatccc cggcgccatg gtggaaattc tggaaaaaat cctgaccctg
     4501 tcatgcttca gttttcctct ccggccatcc cggggagttc ctgaaccttc ccaaaaatag
     4561 tcagatctct gaacgctcct caccactaaa aatacccaca ccccacgcaa aattaaaatt
     4621 ttgcagattt gtatttaata tcagtagttt actttcctga gatttcgttt tttaaatttt
     4681 atttatatag atccgactct atgacgactc gtcatagagt ccccggcgag tcgtcataga
     4741 gtcggtaacg actcagggct ataaaaacaa tgagttaata acgacccgac tctagacccg
     4801 actccccgtt tggttgtttt ttagtcgcgg cgactctagg tacgactcta gtgcagagtc
     4861 gccggtgaat cgtgtggtga gtcgtccggc gacttgccat aacgtgattg ccggccgtcg
     4921 acgaacccga ttcctgaacg tgctgaaaac cggttttccg gctgcgccgg caacgcttca
     4981 cggccacgca a
//
