LOCUS       NZ_CP072419             3149 bp    DNA     circular CON 05-JAN-2024
DEFINITION  Klebsiella pneumoniae strain B32278 plasmid p6B32278, complete
            sequence.
ACCESSION   NZ_CP072419
VERSION     NZ_CP072419.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN18478623
            Assembly: GCF_017742935.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 3149)
  AUTHORS   Veeraraghavan,B., Varghese,G.M. and Vijayakumar,S.
  TITLE     Complete genome sequencing of K. pneumoniae
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3149)
  AUTHORS   Veeraraghavan,B., Varghese,G.M. and Vijayakumar,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAR-2021) Clinical Microbiology, Christian Medical
            College, Ida Scudder road, Vellore 632004, India
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method :: Canu v. 1.8; Unicycler Hybrid v. 0.4.7
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 38.7x
            Sequencing Technology             :: Illumina; Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/05/2024 07:55:15
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,413
            CDSs (total)                      :: 5,285
            Genes (coding)                    :: 5,141
            CDSs (with protein)               :: 5,141
            Genes (RNA)                       :: 128
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 14
            Pseudo Genes (total)              :: 144
            CDSs (without protein)            :: 144
            Pseudo Genes (ambiguous residues) :: 0 of 144
            Pseudo Genes (frameshifted)       :: 63 of 144
            Pseudo Genes (incomplete)         :: 82 of 144
            Pseudo Genes (internal stop)      :: 23 of 144
            Pseudo Genes (multiple problems)  :: 20 of 144
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP072419.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3149
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="B32278"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="p6B32278"
                     /geo_loc_name="India: Vellore"
                     /lat_lon="12.9246 N 79.1348 E"
                     /collection_date="2014"
                     /collected_by="Christian Medical College"
     gene            complement(<386..>3145)
                     /locus_tag="J6256_RS26895"
                     /old_locus_tag="J6256_26890"
                     /pseudo=""
     CDS             complement(<386..>3145)
                     /locus_tag="J6256_RS26895"
                     /old_locus_tag="J6256_26890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611787.1"
                     /GO_function="GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /GO_process="GO:0006313 - DNA transposition [Evidence IEA]"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="Tn3-like element Tn3 family transposase"
                     /name="Tn3-like element Tn3 family transposase"
ORIGIN
        1 tcactagagt cgtacccaga gtcgtcacgt ctaaaaaaca accaaacggg gagtcgggtc
       61 tagagtcggg tcgttgttaa cttattgttt ttatagtcct gagtcgttac cgactctatg
      121 acgactcgcc ggggactcta tgacgagtcg tcatagagtc ggatctgtat aaataaaatt
      181 aaaaaaacga aatttataga acgtaaacta ctgatataaa atacaaatct gcaaaatttt
      241 aattttgcgt ggggtgtgga tatttttagt ggtgaggagc gttcagagat ctggcgattt
      301 ttgggaaggt tcaggaactg gggtctgacg ctcagtggaa cgaaaactca cgttaagcaa
      361 cgttttctgc ctctgacgcc tcttttaatg gtctcagatg tcctttggtc accagttctg
      421 ccagcgtgaa ggaataatgg ccgagcatat tgatatgtcc gtggcaaagc ggggagaggc
      481 gtgcgatatc ttcatcattc agtgtttcac cctgcgcccg gagatgatcc agggctgcct
      541 gcatataaat agtgttccat aacacgacgg cgttagtgac cagccccagt gtgcccagtt
      601 gatcttcctg accgtcggta tatcgttttc ttatctcacc tttttgaccg tgacagatgg
      661 ctctggcaac ggcatggcga ctttctcccc gattaagctg ggtcagaatg cgccggcggt
      721 aatcttcatc atcaatataa ttaagcagat acagcgtttt gttgatgcgc cccacttcaa
      781 tgattgcctg agtcagtccg gaaggacgtt cacttttcag caatgaacgg accagcactg
      841 aaacctgtac tttgcccagc ttcagggagc cagcggtccg gatcatttcg tcccactgaa
      901 ggactatttt tcggggatct gattgccctc tggcaatatc attcagcacg ccatagtcgg
      961 catcatggtc cattcgccag aaaaccgaag caccggcatc agccaggcgt ggagaaaact
     1021 ggtatcccag cagccagaaa aggccaaaga caagttcgct ggcacctgct gtatcggtca
     1081 taatttcggt tggattcagc ccggtctcct gttccagaag accttccagc acaaagatag
     1141 agtccctcag cgtccccggt ataacgatgc catgaaagcc ggaatactga tcggacacaa
     1201 agttgtacca ggtgatccct ctgttattac caaagtattt gcggttcggt ccggcattga
     1261 ttgttctgac tggcgtaaca aagcgcattc catctgcaga tgccacttct cctccacccc
     1321 atatctgtgc cagtggcagc gttgcctgaa aatcaaccag tctggcatta gcgctggtga
     1381 tagtttcagc ccgcagatag ttcgcttttg tccagttcag ccggtgtcgg gtcagtgcag
     1441 gaacatttga tctgatcagt ggttccagac cgatattgca ggcttcagcc atcagcacgg
     1501 cgctgatgct gacgggcaga tcatcaactc tggcactggc ttcactagca tggaaaaact
     1561 catcagcaaa tccggtatgg gcgttaattt cgagcagcaa ctccgttaaa tccaccggag
     1621 ggagtagatc actgatcatt ttgctcagtc gtttcagact gtccggctca tcaagactgg
     1681 cgaggggaga aattgtcaac cggggcttcg ggccagaaac atcgagttcg acagcctcat
     1741 tttcgcaaag acgtgcagca acctgtctgt aacgactatc aagctgatga cccagagatt
     1801 ttattgcttc ctgcgggtct gtcgggtgcc ccaaagaacg ataaacctta atccggtttg
     1861 cctgccagtc agcaccctgt agtaatcttg cacgaggatc tccccaccgg ttactgccgg
     1921 taacgtagac atccctccgc ctcagactat cctgcagttt actgagaaag cagagcgtgt
     1981 atcccctgcg ggtgatatgt ttttccttgt taatcaccag ccgtttccat gaccgactga
     2041 taatttccgt tggtgcgtcg tcaaaaaact gccgccgtga gctgaactcc cggctgaggt
     2101 agtcacaggc attcagagtg gtaaccccgg caggtgcgga tgaaaattta acggtattca
     2161 gcagatgggg caggaaacga cgaacgcgcc cgtactgctc caccatttct tcatgaaaat
     2221 tatcgtctga gggccgggca atttcacgga caagcgtgat gatttcagcc agcttttgcc
     2281 ttgggatgta gctgaacacc tcagcacgaa tcgattcgtc cggtgtttct tctttcagca
     2341 ggtacgaaca tgcgctggcg agcgccaatg cagatttatc cagatccttc agcgagcgga
     2401 gccgtttttt ctgcccaatc tttctggcgt cacggatgat aacggccagc atggcgtcca
     2461 gaacgtccaa tgcatcatcc agcgccagcg tttcccatgc aaggacaaag gcaaccagaa
     2521 ccgccatcct tttctgcggt gacatcctgg caatattgaa caccgaagtc ataccagcat
     2581 aacgtgcgag atttttcagg cgcacagccg ggagtgtact caggttttca gcatgcaggc
     2641 caaaatcgtt cagagttttc cagcgttcaa ttgcttcatt aaacgccgga ccactgatgg
     2701 tcacagggcc ctttttcagt gattccagta aagacaggcg gctgcaatca gttggcccca
     2761 gcagcatctc cagctgtgaa cgctgttcgg ctgacggtat cagtgccagt ttgttccaca
     2821 ggcgcaacgt cgccttttcc cttacctctg aaatcaaccg ggtcagcgta gtggctccgg
     2881 ggagaataat acgatgttgc ataagccacc ctgtcgccag atcgaaaagc aggccaggac
     2941 gttcgttgct tatccagctc cgggtatata aaagacgggt aaggcgaaat gtccagggcc
     3001 aggcaaattc acgatactga tagtgctgac gtatcagcgc tgcatgctca cggcgggtat
     3061 tttccctctg accgtattct gcaagaacgg tgatatcacg aatcccgagc tgtctggcgg
     3121 taaaatgccg gacgccggaa ggaatatga
//
