LOCUS       NZ_CP072213             2770 bp    DNA     circular CON 15-MAY-2024
DEFINITION  Bacteroides xylanisolvens strain CL11T00C41 plasmid
            pBxylCL11T00C41-1, complete sequence.
ACCESSION   NZ_CP072213
VERSION     NZ_CP072213.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16451199
            Assembly: GCF_018289035.1
KEYWORDS    RefSeq.
SOURCE      Bacteroides xylanisolvens
  ORGANISM  Bacteroides xylanisolvens
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae;
            Bacteroides.
REFERENCE   1  (bases 1 to 2770)
  AUTHORS   Garcia-Bayona,L., Coyne,M.J. and Comstock,L.E.
  TITLE     Mobile Type VI secretion system loci of the gut Bacteroidales
            display extensive intra-ecosystem transfer, multi-species spread and
            geographical clustering
  JOURNAL   PLoS Genet 17 (4), e1009541 (2021)
   PUBMED   33901198
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2770)
  AUTHORS   Coyne,M.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-JAN-2021) Department of Medicine/Division of
            Infectious Diseases, Brigham & Women's Hospital, 181 Longwood
            Avenue, Boston, MA 02115, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 20-OCT-2020
            Assembly Method                   :: FALCON-Unzip v. 1.2.0
            Assembly Name                     :: BxylCL11T00C41_pbv2
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 185x
            Sequencing Technology             :: PacBio Sequel
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_018289035.1-RS_2024_05_15
            Annotation Date                   :: 05/15/2024 03:47:01
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,530
            CDSs (total)                      :: 5,437
            Genes (coding)                    :: 5,322
            CDSs (with protein)               :: 5,322
            Genes (RNA)                       :: 93
            rRNAs                             :: 5, 5, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 5, 5 (5S, 16S, 23S)
            tRNAs                             :: 76
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 115
            CDSs (without protein)            :: 115
            Pseudo Genes (ambiguous residues) :: 0 of 115
            Pseudo Genes (frameshifted)       :: 37 of 115
            Pseudo Genes (incomplete)         :: 78 of 115
            Pseudo Genes (internal stop)      :: 21 of 115
            Pseudo Genes (multiple problems)  :: 18 of 115
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP072213.1.
            Sequencing by the Institute for Genome Sciences, Genomics Resource
            Center, School of Medicine, University of Maryland, 801 W.
            Baltimore Street, Baltimore, MD 21201, USA. Gene calling method:
            Prodigal version 2.6.3. Annotated using a custom modification of
            Prokka version 1.14.6.
            Bacteria available from Dr. Laurie Comstock, Brigham & Women's
            Hospital, 181 Longwood Avenue, Boston, MA 02115 USA.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2770
                     /organism="Bacteroides xylanisolvens"
                     /mol_type="genomic DNA"
                     /strain="CL11T00C41"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:371601"
                     /plasmid="pBxylCL11T00C41-1"
                     /geo_loc_name="USA: Boston"
                     /lat_lon="42.3361 N 71.1075 W"
                     /collection_date="2009-05"
     gene            1..1104
                     /locus_tag="INE93_RS26545"
                     /old_locus_tag="INE93_05332"
     CDS             1..1104
                     /locus_tag="INE93_RS26545"
                     /old_locus_tag="INE93_05332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004295514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid recombination protein"
                     /protein_id="WP_007219893.1"
                     /translation="MGATSIHVQAVKPGSEIHNFREKELDYVRPELSHLNESWVGDSIS
                     HRLESAKQRYLDTVGQKMQAKAAPIREGVIVIKQETTMQELQQFATVCKERFGIEAFQI
                     HIHKDEGYMNAKQWTPNLHAHVVFDWTQPNGKSVRLSRDDMAELQTIASETLGMERGVS
                     SDRKHLSAMQYKTECAKEQLQELSNDISSALDKHKDVQNQLLQLQKELRSIETKKNVQK
                     LISKASEKFYGLIGKTVNDREKDALKAKVKALEGENEQLSDRLGKAILEKEQNGTKAFK
                     AENDKEYYRQQMDNARTTSNRLRTENQELKTETKELKKELGKMKDLFNSEQLEALRHHF
                     PNISKAMEEGKDLLKQITRSRGFGMGM"
                     /name="plasmid recombination protein"
     gene            1543..2152
                     /locus_tag="INE93_RS26550"
                     /old_locus_tag="INE93_05334"
                     /pseudo=""
     CDS             1543..2152
                     /locus_tag="INE93_RS26550"
                     /old_locus_tag="INE93_05334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004295513.1"
                     /GO_process="GO:0006260 - DNA replication [Evidence IEA];
                     GO:0006276 - plasmid maintenance [Evidence IEA]"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="replication/maintenance protein RepL"
                     /name="replication/maintenance protein RepL"
     Typing          1511..2142
                     /name="rep_cluster_1868"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="95.748"
                     /coverage="100.0"
                     /evalue="0.0"
     Typing          2..1101
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="97.275"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 atgggagcaa caagtattca tgtacaagca gtgaagccgg ggagtgagat tcacaacttt
       61 agggaaaaag agttggacta tgttcgtccc gaacttagtc atttgaatga aagctgggtt
      121 ggagatagca tctcccatcg gctggaaagt gcgaaacaaa gatatctcga tacggttggg
      181 cagaagatgc aggctaaagc cgcacccata cgagagggag taatagtaat caaacaagaa
      241 accaccatgc aggaactcca gcagtttgcc acggtctgca aagaacgttt cggtatcgaa
      301 gcatttcaaa tccatataca caaggacgaa ggatacatga acgcaaagca atggacacct
      361 aaccttcatg cccatgtagt tttcgattgg acgcagccga atgggaaaag tgtgcgttta
      421 tcgcgtgatg acatggcaga actccaaacc atagcatctg aaacactggg catggaacgt
      481 ggcgtttctt ctgaccgcaa acacttatcg gctatgcagt acaagaccga atgtgcgaaa
      541 gaacagcttc aggaactatc aaacgatata tccagtgcat tagacaaaca caaggacgta
      601 caaaaccagc ttcttcagct tcagaaagaa ctacgttcca ttgaaacaaa gaagaacgtc
      661 caaaaactca tttctaaggc ttcagagaag ttttacggct tgattggaaa aacagtcaac
      721 gatagggaaa aggatgcctt aaaagccaaa gtaaaggctt tagaggggga aaatgaacag
      781 ctatccgata gactgggaaa ggctatactt gaaaaagagc aaaacggcac aaaggcattc
      841 aaagccgaga atgacaagga gtattataga caacaaatgg acaacgcaag gacaaccagt
      901 aaccgattaa ggacggagaa ccaagaacta aagaccgaaa ccaaggaatt gaaaaaagaa
      961 cttggtaaga tgaaagactt gttcaattcc gaacaactgg aggctttaag gcatcatttc
     1021 ccaaacatat caaaagctat ggaagagggg aaagacctac tcaagcaaat caccagaagc
     1081 agaggtttcg gtatgggtat gtaacccccc cccgccccca aagggggagc gaccaaacgg
     1141 cagcctctct caatggagtg ttacgtcgtt cggattcgga agaaattttg cagggttcgg
     1201 aaaacggttg tgtgcttatt ctaaaaaaag tttatggtgt ggcgctcgtc gggacgggtg
     1261 gtcccgcccc ttgccgctgg gcgctccccg accgatgatt tttaagtgac tgattttgtg
     1321 ctgttttggg ggtatattaa gaatagaaga aatagaataa gttaagtact tgatacacaa
     1381 tatagggcat tttccatatt ggaaattctc attttccaat ttagaaaata ctgatttcct
     1441 aatataatac taaacaggaa aataatattt cccttaatat tgtttttatg gaaaataata
     1501 gtttactttg tggagaataa tatttcccaa aaacacatca aaatggaaaa taaaaaagca
     1561 gttaagttaa ccgattttca aaagaacgaa gaaaatcctt ttatgaaaca agctatagaa
     1621 ggtattgaaa atcatgttgt taaaaagtat aagagtaata gtggtggcga taagagagcc
     1681 gtagtagctt tagccgacac tgaaactgga gaagtgttta agacttcgtt tatccgtcaa
     1741 atagaagtag atgaagaaca attcactaga tgaagaacaa ttcactaaat tgtatctttc
     1801 taactttgct gcattctttg acctatcaca agcagctatt cgggtttttg gttactttat
     1861 gacctgcatg aaacccaaaa atgatttaat catcttcaat agaaaaaaat gcctagaata
     1921 taccaaatac aaaacagaca aagccgttta taaaggactt gcagaacttg taaaagctga
     1981 aatcatagcc cgaggaccag ccgataatct ttggtttatt aatcctctga tagtattcaa
     2041 tggtgaccga gtgacatttg ctaaaacata cgttcggaaa aagactttag ctgcccaaaa
     2101 gaaagaagaa gcagagaaac gacaattatc acttggcttt gatgaacagt aacactccat
     2161 tgagtgaagc tgccgtttgg tcgctccccc tttgggggcg ggggggggat agataaagtt
     2221 cctctatgta aagttataat gggggatgaa aggcaaggtt cgctaacctt accccgattg
     2281 tttatgcttc ccagcattca atctatcccc gtttatgggt ttctctttca ccctacaaag
     2341 ataacctcat gggggaaaaa tgtccaagaa tatggggtaa aaactatcaa gtcggtagaa
     2401 aataagtatc tttgaagtac atttttagta gaggtactgg tatgcctaga cgaagcagat
     2461 aggcaaaaat aaagccgctg gagatgtcgg atgtccgtca attaactcca gcggcttgta
     2521 ttttggtaac tctcccgtat cggtcggcta ccgtttggtc agcaacaaag gtagtacttt
     2581 attgtcgcaa atccaaatgt tttccccttt atttgtgcat ttacagaaca tttgctaact
     2641 tcgcacctat gcagtatggt gatagcacac tagcacccta aagggtgcgt gtgtaagggg
     2701 acaagccccc ttaaccccct gtcagccggc tgtcaccggc tgttatcgat tgtcacaaaa
     2761 atgttaactt
//
