LOCUS       NZ_CP071783             2259 bp    DNA     circular CON 15-JUL-2023
DEFINITION  Proteus mirabilis strain swupm3 plasmid pswupm3.3, complete
            sequence.
ACCESSION   NZ_CP071783
VERSION     NZ_CP071783.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN18275199
            Assembly: GCF_024138835.1
KEYWORDS    RefSeq.
SOURCE      Proteus mirabilis
  ORGANISM  Proteus mirabilis
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Morganellaceae; Proteus.
REFERENCE   1  (bases 1 to 2259)
  AUTHORS   Yi,L.
  TITLE     Proteus mirabilis from fresh-cut fruit
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2259)
  AUTHORS   Yi,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAR-2021) Food Science, Southwest Univerisity,
            Tiansheng road No.2, Chongqing 400417, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. v0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 10.0x
            Sequencing Technology :: Illumina HiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 07/15/2023 01:33:31
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,516
            CDSs (total)                      :: 3,406
            Genes (coding)                    :: 3,360
            CDSs (with protein)               :: 3,360
            Genes (RNA)                       :: 110
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 46
            CDSs (without protein)            :: 46
            Pseudo Genes (ambiguous residues) :: 0 of 46
            Pseudo Genes (frameshifted)       :: 18 of 46
            Pseudo Genes (incomplete)         :: 32 of 46
            Pseudo Genes (internal stop)      :: 9 of 46
            Pseudo Genes (multiple problems)  :: 9 of 46
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP071783.1.
            Bacteria and source DNA available from yilanhua.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2259
                     /organism="Proteus mirabilis"
                     /mol_type="genomic DNA"
                     /strain="swupm3"
                     /isolation_source="fresh-cut fruits"
                     /db_xref="taxon:584"
                     /plasmid="pswupm3.3"
                     /geo_loc_name="China"
                     /lat_lon="29 N 106 E"
                     /collection_date="2019-07"
                     /collected_by="yilanhua"
     gene            complement(213..653)
                     /locus_tag="J3U94_RS17555"
                     /old_locus_tag="J3U94_17530"
     CDS             complement(213..653)
                     /locus_tag="J3U94_RS17555"
                     /old_locus_tag="J3U94_17530"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_136135610.1"
                     /translation="MSQLFRLASPADYEYIEEIKLWELSFDKRPVQGVRCEDPVIGAEK
                     YNRGREKFKALASRHKKHWKPNGLTFSELIRWAIECGTPEQCQLVLALYHCTNDDDYQA
                     MGIQLSRSIDNANVSPIIFFTGKNQRLLGDVSMLKQLEEKAK"
                     /name="hypothetical protein"
     gene            complement(1295..1552)
                     /locus_tag="J3U94_RS17560"
                     /old_locus_tag="J3U94_17535"
     CDS             complement(1295..1552)
                     /locus_tag="J3U94_RS17560"
                     /old_locus_tag="J3U94_17535"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_253343421.1"
                     /translation="MSTVTFVCDACGTENSVESDDYDTWSEGDEGNMGPKVEHWTEIET
                     TCSECGAEISITLNQTEYPIGSFENVEVSSSEGASNIFID"
                     /name="hypothetical protein"
     Typing          complement(1765..1920)
                     /name="Col3M"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="98.089"
                     /coverage="100.0"
                     /evalue="2.29e-71"
ORIGIN
        1 cttttttcgc aggcgtccag ccgaagaaaa tagccagagg gcggagcctt atgtcattca
       61 ttttcgtcca gaaaatgagt ggcattgata ctgaaagtat cacgatttgt ttttcaactt
      121 acctattatt ttacctatta ttctaggtat tattctacct attacagacg aaataggtaa
      181 aataataggt gaaataatag gtaaacctaa cgttatttag ccttttcctc tagctgtttt
      241 agcatcgaaa catcacctaa taaccgttga tttttacctg tgaaaaagat gatcgggctg
      301 acatttgcat tatcaatact tcggcttaac tgaattccca tcgcctgata atcatcatcg
      361 tttgtacaat ggtataacgc taaaacaagc tgacattgtt caggagttcc gcactctatt
      421 gcccagcgga tcaactccga aaaggtcaat ccgttcggtt tccagtgttt tttatgccgt
      481 gacgccaacg ccttaaattt ttcacgccct cgattgtatt tttctgcccc gatcaccgga
      541 tcttcacaac gaaccccttg aaccggtcgc ttatcaaatg acaattccca taattttatt
      601 tcttcgatgt attcgtaatc tgctggcgat gccaaacgaa ataattgaga catagtgatc
      661 ccctcagatg atgtgtgaac ggagacagta taaggctttc gggaaattcc gcttcctcga
      721 cgtgaaacaa gttcacgcct tgcggcgagc gttgcgagtt gaatttacag aagttattag
      781 gcttcagatg taacaaagcc ccgtgacagg gtcatggggc tctggtactc taaatcttgt
      841 gcattcattg ctaaagattt cgatgtggta atccaatctt agcaatggga agctagcttg
      901 tcactacttc cttaaaacca ttcaacgaca ttaactcaaa tgcaccactt gattgactcg
      961 gacttagccc ggtctccgaa aggataaaca ggcaaattgt ggtagtaaaa cgtaccggaa
     1021 cacgaaattc cggctctgcc tccgaatcac gctgcggtat cgaaagatta cagtgcgtac
     1081 ctgataagag caccaatcaa cggactaggg atttcttgga ttgcgaagtg tcgaaagaaa
     1141 cccaacctaa ccagacttag ctaatagaac aagctaagga gccatgaccc aataaccgat
     1201 catggagaaa agcaaagaca agatgatgtt gtcgcttcgc tccgttttga ttagtaccac
     1261 attggggcat taggcactta tatacaaaaa aatatcagtc aataaagata ttgctagcgc
     1321 cctctgacga actaacttcc acattttcaa aactaccaat aggatactca gtttgattaa
     1381 gcgttatact tatttctgca ccgcattcac tacaggttgt ttcaatttca gtccagtgtt
     1441 caactttcgg ccccatattg ccctcatccc cttcagacca agtatcgtaa tcatcagact
     1501 caactgaatt ttcagtccca cacgcatcac acacaaaagt aactgtactc ataaggaatc
     1561 ccacaatgcc catgtaaaaa gtaagtgtta tatatggaca atataagaca atttaaagtg
     1621 catacgttat aaagtttgta attcgtttta tatatcaatt ttaaagctat ggagaacgaa
     1681 aatttgctca agaaaatcac gcaagaatgg gaaatactga aaattgtaat gagcctatcg
     1741 atttttagta cgactaatcc cttttatgtt aaacgggcga gttagttagc aaaaacctcc
     1801 cgttcatccc cattaaagcc cctcgaaacg attttaagac acgatcaccc tataaaacac
     1861 ccaaatctac gctgaaagtt tagaacggtt ttgcgggctt ctgagtgcgt ttttaacatc
     1921 gtgcaaactg acaagtaaaa cgatgcgaaa tcgctgaaag tcacaaactt gttttgtggc
     1981 aagaagcgat ttgaccaacc gagtaaaacg agggcggtag gctttttgtt tttatcctga
     2041 tgagcgtcca gcgaagaaag ggaaaaacag ggggagccga aacgaaatga cacgccccag
     2101 cgatggcaag tgaaccccag tgaacgtgtt tcgttttggg ggcaaagccc cccgtcaagc
     2161 gaagcgtctg accaccacat ttttgagcga ccaaatacag gggcgaaaaa agggggtggt
     2221 cagacgaacg cagtgagttt gacgggcttg ggtgaatgg
//
