LOCUS       NZ_CP071779             4875 bp    DNA     circular CON 15-JUL-2023
DEFINITION  Proteus mirabilis strain swupm2 plasmid pswupm2.2, complete
            sequence.
ACCESSION   NZ_CP071779
VERSION     NZ_CP071779.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN18275150
            Assembly: GCF_024138815.1
KEYWORDS    RefSeq.
SOURCE      Proteus mirabilis
  ORGANISM  Proteus mirabilis
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Morganellaceae; Proteus.
REFERENCE   1  (bases 1 to 4875)
  AUTHORS   Yi,L.
  TITLE     Proteus mirabilis from fresh-cut fruit
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4875)
  AUTHORS   Yi,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAR-2021) Food Science, Southwest Univerisity,
            Tiansheng road No.2, Chongqing 400417, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. v0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 10.0x
            Sequencing Technology :: Illumina HiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 07/15/2023 01:27:27
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,515
            CDSs (total)                      :: 3,405
            Genes (coding)                    :: 3,359
            CDSs (with protein)               :: 3,359
            Genes (RNA)                       :: 110
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 46
            CDSs (without protein)            :: 46
            Pseudo Genes (ambiguous residues) :: 0 of 46
            Pseudo Genes (frameshifted)       :: 18 of 46
            Pseudo Genes (incomplete)         :: 32 of 46
            Pseudo Genes (internal stop)      :: 10 of 46
            Pseudo Genes (multiple problems)  :: 10 of 46
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP071779.1.
            Bacteria and source DNA available from yilanhua.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4875
                     /organism="Proteus mirabilis"
                     /mol_type="genomic DNA"
                     /strain="swupm2"
                     /isolation_source="fresh-cut fruits"
                     /db_xref="taxon:584"
                     /plasmid="pswupm2.2"
                     /geo_loc_name="China"
                     /lat_lon="29 N 106 E"
                     /collection_date="2019-07"
                     /collected_by="yilanhua"
     gene            10..894
                     /locus_tag="J3U93_RS17530"
                     /old_locus_tag="J3U93_17505"
     CDS             10..894
                     /locus_tag="J3U93_RS17530"
                     /old_locus_tag="J3U93_17505"
                     /EC_number="3.1.21.-"
                     /inference="COORDINATES: protein motif:HMM:NF021097.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HaeIII family restriction endonuclease"
                     /protein_id="WP_196572937.1"
                     /translation="MASTSNDNGRAFEYCLTKYILDNSSSKIDIDNETKNQQARDESKY
                     ENLSPELKILFSNASKRYFELLPTTIFSLKRLSDNEGKDGNPTDIELIFIENGLPKTKN
                     ISLKNNHNAVKHQRPGSLISQLGISDKNEDNLYRECIKSLERTFISSVESLGFNTSNEL
                     LFSDIKSCSEQVILDLYNSFCSLTASVINKFGSIHAGDYFHFLVSRTDFEKLIVYPNKI
                     IIQEWYKLPTPSAMTAFVSDNSYVNVIFNNGYTFKMRLHNASSRFKKGSSISLKFDTRL
                     EESAKIPTSEFFI"
                     /name="HaeIII family restriction endonuclease"
     gene            991..1971
                     /locus_tag="J3U93_RS17535"
                     /old_locus_tag="J3U93_17510"
     CDS             991..1971
                     /locus_tag="J3U93_RS17535"
                     /old_locus_tag="J3U93_17510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012857487.1"
                     /GO_function="GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA cytosine methyltransferase"
                     /protein_id="WP_196572941.1"
                     /translation="MNIASLFSGAGGLDLGFELAGFNISWSNEFDKTIWETHKRNFPNC
                     ILDQRSIVEVQGNDIPEISGFIGGPPCQSWSEAGSRKGIDDHRGQLFYEYIRLLNEKKP
                     LFFLAENVSGILHKKHEDAFNNILKSFEDSGYNISFKLLNANDYNVPQDRLRVFIVGIR
                     KEYKDIFFKFPEPFGFNLKLKDYIFDIKDNAVPSDEKNKSNRNTLIPNHEYMTGGFSSI
                     FMSRNRVRSWEEPSFTIQAGGRHAPIHPNAPKMIKLETDKFEFVKEKEKFYRRMSIREC
                     ARVQTFPDSFIFEYNSVVDGYKMVGNAVPVNLARVLAEQIKKQLF"
                     /name="DNA cytosine methyltransferase"
     gene            complement(2221..3633)
                     /locus_tag="J3U93_RS17540"
                     /old_locus_tag="J3U93_17515"
     CDS             complement(2221..3633)
                     /locus_tag="J3U93_RS17540"
                     /old_locus_tag="J3U93_17515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012478624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /protein_id="WP_196572940.1"
                     /translation="MLIKFFGNKGGGSPKASMDYLLREGKKDTKFQVLRGDPELSQSIA
                     ESCGFKNAYTVGCLSFEEENIPDHHKTAIMDRFEKHVFAGLEKEQYNITWVEHTDKNRL
                     ELNFYIPNVELTSLKRLQPYYDKADRPLIENFKQVINHEYGLSDPRSPDKQQTLITRAD
                     LPTEKRSALKEIDAGISALVQKGLIRNRDDVIEALKQSGFEIARVTPKNLSIKTEGQNL
                     RLKGAFYEQDFKFSADVLRECQTRQRDYDGESEARYRTARERLESATGRRQQEFERKYP
                     SRADEIDQAYRERVETTLHHHGRTDDYIGRDQSVSHVLERERIPEPDRVETVSRDIPDA
                     EPQYQTDQLHHGRQEQTTVRRRRSKISERKLGREERTLPNSSEVSHHDRDGTTLRERLE
                     HLVTTARDRYQQFISACRGARNTEQSVSHAIQGNQSTVSDFNRTAEQVSERLTQQIQRQ
                     EQKRSRGFSIGF"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            complement(3623..3934)
                     /locus_tag="J3U93_RS17545"
                     /old_locus_tag="J3U93_17520"
     CDS             complement(3623..3934)
                     /locus_tag="J3U93_RS17545"
                     /old_locus_tag="J3U93_17520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005618548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_196572939.1"
                     /translation="MTTKRTETVIIRLTPDEKQSLLLRKTKPRLAEWLRELALGQKPKR
                     QPKSVDPALLFELNRIGVNLNQIARHCHQAPVSMETVNIALALRHIEALLREVLERAD"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            4081..4269
                     /locus_tag="J3U93_RS17550"
                     /old_locus_tag="J3U93_17525"
     CDS             4081..4269
                     /locus_tag="J3U93_RS17550"
                     /old_locus_tag="J3U93_17525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_196572938.1"
                     /translation="MTKQEKAVVNMAKFLQAQSLLLLEKLNELDSNNLDAETNLCEELH
                     EQAESLHQRLSAKLEGE"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            4536..4685
                     /locus_tag="J3U93_RS17610"
                     /pseudo=""
     CDS             4536..4685
                     /locus_tag="J3U93_RS17610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001396189.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /name="replication initiation protein"
     Typing          complement(3627..3934)
                     /name="MOBF"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="96.117"
                     /coverage="100.0"
                     /evalue="1.41e-58"
ORIGIN
        1 aggtataaaa tggcttcaac atcgaatgat aacggtagag catttgagta ttgcttaact
       61 aaatacattt tagacaactc atctagtaag atagatattg ataatgaaac aaaaaatcaa
      121 caagctagag atgaaagtaa atatgaaaat ctatcaccag aattgaaaat cctttttagt
      181 aacgcatcga aaagatattt tgaattactg cctacaacta tattttcgtt aaaaagatta
      241 agtgataacg aaggtaaaga tgggaatcca acagacattg agctaatttt catagaaaat
      301 ggtttaccaa aaactaaaaa tatctctctg aaaaacaatc ataatgcagt aaagcatcaa
      361 agaccgggct ctctaatatc tcaactaggt atatcagata aaaatgaaga caatctttac
      421 agggaatgta taaaatcatt agaaagaaca tttatatcta gtgttgagtc tctaggattt
      481 aacactagca acgaactact attctccgat ataaaatcat gttcagaaca agttatttta
      541 gacctatata acagtttctg ctctcttact gctagtgtaa tcaataagtt tggttctatt
      601 catgccggtg attacttcca ttttttagta tcaagaactg actttgaaaa actaatcgtt
      661 tacccaaata aaataatcat acaagagtgg tataaattac caacaccatc agcaatgacc
      721 gcattcgttt ctgataatag ctacgtaaat gttattttta ataatggcta tacattcaaa
      781 atgagattgc ataatgcatc atctagattc aaaaaaggat catctatatc acttaagttt
      841 gataccagac ttgaagaatc cgctaaaata ccaacctctg aatttttcat ataattaaga
      901 taaaaaaaga aaaggttttt ctggcctttt ctttttctat atgtaatcat aatgtctcta
      961 tagttaaagt gaagacaaat catgagtgaa attaatattg cgtctttatt ctccggagct
     1021 ggtggtctag accttggttt tgaattggct ggatttaata tttcctggtc gaatgagttt
     1081 gataaaacaa tatgggaaac acataaaaga aacttcccta attgtatact agatcaacgt
     1141 tccatagtcg aagttcaagg caatgatata cctgaaatat ctggatttat tggtggacct
     1201 ccttgtcaaa gctggtcaga agcaggaagt aggaaaggaa tagatgatca tagaggtcaa
     1261 ttgttttatg aatacattcg ccttttaaat gaaaaaaaac ctctgttttt tttagctgaa
     1321 aatgtatcag gcatattaca caagaagcat gaagatgctt ttaataatat attaaagtca
     1381 tttgaagatt ctgggtataa tatttcattt aaattattaa atgcaaatga ttataatgta
     1441 cctcaagata gacttagagt atttatagtt ggaataagaa aagaatacaa ggatatattc
     1501 tttaaattcc cagagccttt tggctttaat ttaaaattaa aagattatat ttttgatata
     1561 aaagataatg ccgttccatc tgatgaaaag aataaatcta atagaaatac attaatacct
     1621 aaccatgaat atatgacagg tggattttca tctatattca tgtctcgaaa tagagttcgt
     1681 agttgggagg aaccgtcatt cacaatccaa gcaggaggac gtcatgcccc aatacaccct
     1741 aatgcaccca aaatgataaa gctagaaaca gataaatttg agtttgtgaa agaaaaagaa
     1801 aaattttata gaaggatgag tattagagaa tgcgccagag ttcaaacctt tcctgactca
     1861 tttatatttg aatataattc agttgtagat ggttataaaa tggtcggaaa tgcagttcct
     1921 gttaatctag caagagtttt agccgaacaa ataaaaaaac aacttttcta gttcccataa
     1981 gacccattat gttaaacggg cgagtttact actcaaaacc gcccgtttaa caccatcaga
     2041 acgcctcagc gcgattttaa gcaccaaaca caccccataa cacccaaatc catcctgaaa
     2101 gtttagaacg gtttctgtga cgttttaggg cgtttttaac attccttttt ttcgtccggt
     2161 tttcatcgcc aaaccggtga aagtcgcaaa cttgtttgtg gcttgaaacg gttttatccg
     2221 ttaaaaaccg atactgaacc cccgactccg tttctgctcc tgtcgttgga tctgctgtgt
     2281 cagccgttct gatacctgtt cagcagtccg gttaaagtcg ctaactgttg actgatttcc
     2341 ctgtattgca tggctaactg actgttctgt atttcgagct ccccgacacg ctgagataaa
     2401 ttgctgataa cgatctcttg ctgttgtaac aaggtgctca aggcgttctc taagagttgt
     2461 tccgtctcgg tcatggtggc tcacttcgct agaattcggt agggttcgtt cttctcgccc
     2521 cagttttcgc tctgatattt tggatcgacg gcggcgcaca gtcgtttgct cttgtcttcc
     2581 atgatgcagt tggtcagttt gatattgtgg ctctgcgtct ggtatatctc ggctgaccgt
     2641 ttccactcgg tcaggttctg gtattcgctc acgctccagt acgtgagaaa cagactgatc
     2701 cctgccaata taatcatcag tacgcccatg atgatgaagg gtagtttcca cacgctcacg
     2761 gtacgcctga tcaatttcat ctgctcggct tggatacttt cgctcaaact cctgctggcg
     2821 tctgccagtt gcgctttcaa gtcgttctcg tgctgttcga tagcgagctt cactttctcc
     2881 gtcataatct cgctgtcttg tctggcattc tcggagaacg tctgcgctaa atttaaaatc
     2941 ctgctcatag aacgcccctt ttaaacgtaa attttgcccc tcggttttga ttgagaggtt
     3001 tttcggtgtc actctggcta tctcaaagcc tgactgtttc agcgcttcaa tcacatcatc
     3061 acggttgcgg atcagtcctt tctgcactaa tgccgatatg ccggcatcaa tctctttcag
     3121 ggctgaccgt ttttctgtcg gtaagtccgc acgggttatc agcgtttgct gtttatccgg
     3181 cgaacgggga tcagaaagtc cgtattcatg attgataacc tgcttaaaat tttcaatcag
     3241 cggtctgtct gctttgtcat agtaaggttg taagcgtttc agtgaggtaa gctcgacgtt
     3301 agggatgtaa aaattcagct ctaaccggtt tttatccgta tgctcaaccc atgtgatgtt
     3361 gtactgctct ttctccagcc ccgcaaaaac gtgcttttca aatctgtcca taatggcggt
     3421 tttgtgatgg tcgggtatat tttcttcctc aaatgacaga caccccacgg tgtacgcatt
     3481 cttaaatccg caactctccg caatagactg cgacaattca ggatcacccc gtaagacctg
     3541 aaattttgtg tcctttttac cctcacgaag cagataatcc atgctggctt tcggactacc
     3601 accgcctttg ttaccaaaga atttaatcag cacgctcgag cacctcacga agcagtgcct
     3661 cgatatgtcg taacgctaag gcaatattga ccgtctccat cgagaccggc gcctgatgac
     3721 aatgacgggc tatctgattg aggttcacac ctatccggtt aagctcaaac aacaatgcgg
     3781 gatctacgct tttcggctga cgtttaggtt tctgacctag cgccagttca cgtaaccact
     3841 cagccaaacg gggtttggtt ttccgcagaa gtaacgattg tttctcgtca ggtgtcaaac
     3901 gaataatcac ggtttcggtg cgtttggtcg tcatgctgtt gtccttttgg ggtcaagggg
     3961 cgaagcccat tgcaaggtca cgaggaaatc tcgcagagat aacgatgtgt gtccttgccc
     4021 taaacattaa cagcagataa gattttgtac aatcagcgaa gaaataatgg gatttgacag
     4081 atgacgaagc aggaaaaagc tgtcgtaaac atggcgaagt ttttacaggc tcagagtctc
     4141 ctcttactgg agaaactgaa tgagctagat tcaaataatc tcgatgcgga aaccaaccta
     4201 tgcgaagaac tccacgaaca agcagagtca ctacaccaac gactgagcgc aaaactagaa
     4261 ggtgagtagc ccttttacaa taggctccgc cctcctgacg agcttcacaa aaatcgactg
     4321 attttcggtg ctctagtcaa gagtggcgaa acccgacagg actatcgaga tatcagaagt
     4381 ttccctctga cggctccctc gtgcgctctc ctgttcccac cttacaagtt tacagccggt
     4441 tttaatccgc tctttccatc tttgggggcg ctatctctca gcttccctgt accggcactg
     4501 cgcttgctta ggtggttcgc tccaagctgg gctatttgca cgaactcccc gtttagcccg
     4561 actatcacgc ctgttcaggt aactgttctc ttgaatccaa ccctgacaga cacgcaaaaa
     4621 cgccactggc gatagccttt ggtaacaaga gtgcagaatt gtttgctgaa atccttgatg
     4681 tctgaccgtc attacggcta aactgatagg acagaatttg gtttcagcgg tgttcagacc
     4741 ctgttacctc ggttcaaaga gttgctgctc tatgaaccaa cctttaagaa aaccgccttt
     4801 gctgaggcgg ttttttttta cgtcactaag actacccgat ctcccccctt acaggaaact
     4861 acttttttta ttaag
//
