LOCUS       NZ_CP071778             4942 bp    DNA     circular CON 15-JUL-2023
DEFINITION  Proteus mirabilis strain swupm2 plasmid pswupm2.1, complete
            sequence.
ACCESSION   NZ_CP071778
VERSION     NZ_CP071778.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN18275150
            Assembly: GCF_024138815.1
KEYWORDS    RefSeq.
SOURCE      Proteus mirabilis
  ORGANISM  Proteus mirabilis
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Morganellaceae; Proteus.
REFERENCE   1  (bases 1 to 4942)
  AUTHORS   Yi,L.
  TITLE     Proteus mirabilis from fresh-cut fruit
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4942)
  AUTHORS   Yi,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAR-2021) Food Science, Southwest Univerisity,
            Tiansheng road No.2, Chongqing 400417, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. v0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 10.0x
            Sequencing Technology :: Illumina HiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 07/15/2023 01:27:27
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,515
            CDSs (total)                      :: 3,405
            Genes (coding)                    :: 3,359
            CDSs (with protein)               :: 3,359
            Genes (RNA)                       :: 110
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 46
            CDSs (without protein)            :: 46
            Pseudo Genes (ambiguous residues) :: 0 of 46
            Pseudo Genes (frameshifted)       :: 18 of 46
            Pseudo Genes (incomplete)         :: 32 of 46
            Pseudo Genes (internal stop)      :: 10 of 46
            Pseudo Genes (multiple problems)  :: 10 of 46
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP071778.1.
            Bacteria and source DNA available from yilanhua.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4942
                     /organism="Proteus mirabilis"
                     /mol_type="genomic DNA"
                     /strain="swupm2"
                     /isolation_source="fresh-cut fruits"
                     /db_xref="taxon:584"
                     /plasmid="pswupm2.1"
                     /geo_loc_name="China"
                     /lat_lon="29 N 106 E"
                     /collection_date="2019-07"
                     /collected_by="yilanhua"
     gene            complement(372..812)
                     /locus_tag="J3U93_RS17510"
                     /old_locus_tag="J3U93_17485"
     CDS             complement(372..812)
                     /locus_tag="J3U93_RS17510"
                     /old_locus_tag="J3U93_17485"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_015063446.1"
                     /translation="MSQLFRLASPEDYEYIEELNLWELSFDKRPVQGVRCEDPVIGAEK
                     YNQGREKFKALASRHKKHWKPNGLTFSELIRWAIECGTPEQCQLVLALYHCTNDDDYQA
                     MGIQLSRSIDNANVSPIIFFTGKNQRLLGDISMLKQLEEKVR"
                     /name="hypothetical protein"
     gene            complement(1450..2094)
                     /locus_tag="J3U93_RS17515"
                     /old_locus_tag="J3U93_17490"
     CDS             complement(1450..2094)
                     /locus_tag="J3U93_RS17515"
                     /old_locus_tag="J3U93_17490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_032495680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinolone resistance pentapeptide repeat protein
                     QnrD1"
                     /protein_id="WP_012634451.1"
                     /translation="MEKHFINEKFSRDQFTGNRVKNIAFSNCDFSGVDLTDTEFVDCSF
                     YDRNSLEGCDFNRAKLKNASFKSCDLSMSNFKNISALGLEISECLAQGADFRGANFMNM
                     ITTRSWFCSAYITKTNLSYANFSRVILEKCELWENRWNGTVITGAVFRGSDLSCGEFSS
                     FDWSLADFTGCDLTGGALGELDARRINLDGVKLDGEQALQLVESLGVIVHR"
                     /name="quinolone resistance pentapeptide repeat protein
                     QnrD1"
     gene            complement(2896..3336)
                     /locus_tag="J3U93_RS17520"
                     /old_locus_tag="J3U93_17495"
     CDS             complement(2896..3336)
                     /locus_tag="J3U93_RS17520"
                     /old_locus_tag="J3U93_17495"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_136135610.1"
                     /translation="MSQLFRLASPADYEYIEEIKLWELSFDKRPVQGVRCEDPVIGAEK
                     YNRGREKFKALASRHKKHWKPNGLTFSELIRWAIECGTPEQCQLVLALYHCTNDDDYQA
                     MGIQLSRSIDNANVSPIIFFTGKNQRLLGDVSMLKQLEEKAK"
                     /name="hypothetical protein"
     gene            complement(3978..4235)
                     /locus_tag="J3U93_RS17525"
                     /old_locus_tag="J3U93_17500"
     CDS             complement(3978..4235)
                     /locus_tag="J3U93_RS17525"
                     /old_locus_tag="J3U93_17500"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_253343421.1"
                     /translation="MSTVTFVCDACGTENSVESDDYDTWSEGDEGNMGPKVEHWTEIET
                     TCSECGAEISITLNQTEYPIGSFENVEVSSSEGASNIFID"
                     /name="hypothetical protein"
     ARG             complement(1454..2094)
                     /name="qnrD1"
                     /gene="qnrD1"
                     /gene_name="quinolone resistance pentapeptide repeat
                     protein QnrD1"
                     /tool="amrfinderplus"
                     /drug_class="QUINOLONE"
                     /identity="100.0"
                     /coverage="100.0"
     Typing          complement(2189..2344)
                     /name="Col3M"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="98.089"
                     /coverage="100.0"
                     /evalue="2.29e-71"
     Typing          complement(4448..4603)
                     /name="Col3M"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="98.089"
                     /coverage="100.0"
                     /evalue="2.29e-71"
ORIGIN
        1 tttttttcgc aggcgtccag ccgaagaaaa tagccagagg gcggagcctt atgtcattca
       61 ttttcgtcca gaaaatgagt ggcattgata ctgaaagtat catggggtgc aagttagtaa
      121 aactatgatt ctacccatta tttcacccgt tattctgccc gttataccta aattgggtgc
      181 aataacgggt aaagtaatag gtagaataac aggtggatta ataggtaaga aataacacaa
      241 cgtcatcttg tgtctatcta ttattctgta tcttattcta tgtattattc tacctattac
      301 agacgaaata gataaaataa gagatagaat aatagatagg ataatacata aaataatagg
      361 taaacctaac gtcagcgcac cttttcttcg agctgtttta gcatcgaaat atcacctaat
      421 aaccgttgat ttttacctgt gaaaaagatg atcggactga catttgcatt atcaatactt
      481 cggcttaact gaattcccat cgcctgataa tcatcatcgt ttgtgcaatg gtataacgct
      541 aaaacaagct gacattgttc tggagttccg cattctattg cccagcggat caactccgaa
      601 aaggtcaatc cgttcggttt ccagtgtttt ttatgccgtg acgctaacgc cttaaatttt
      661 tcacgccctt gattatattt ttctgccccg atcaccggat cttcacaacg aaccccttga
      721 accggtcgct tatcaaatga caattcccat aaatttaatt cttcgatgta ttcgtaatct
      781 tctggcgatg ccaaacgaaa taattgagac atagagacac cctccgatca tgtgtgaacg
      841 gagacagtat aaggctttcg agaaattccg cttcctcgac gtgaaacaag ttcacgcctt
      901 gcggcgagcg ttgcgaattg aatttatgag gtttaccaag ctccagatgt aacaaagccc
      961 cgtgacagca tcacagggct ctggtactct aaatcttgtg cattcgttgc tcagattaga
     1021 cgtcgcaatc caatcttagc aacgtgagag gcgcttgtca cgttctcatt aaataccagc
     1081 caacgacatt aacccaaatg caccacttga ttgactcgga cttagcccgg tctccgaaag
     1141 gataaacagg caaattgtgg tagtaaaacg taccggaaaa cgaaattccg gctctacctc
     1201 cgaatcacgc tgcggtatcg aaagattaca gtgcgtacct gataagagca ccaatcaacg
     1261 gactagggat ttcttggatt gcgaagtgtc gaaagaagcc caacctaacc aaacttagcc
     1321 agattaacga gctaagagac catgacccaa taactgatca tggagaaaag caaagacaag
     1381 atgaagatgt cgcttcgctc cgttttgatt agtaccacat tggggcatta ggcgtttttt
     1441 acctagattt tatcggtgaa caataacacc taaactctca acaagctgaa gcgcctgctc
     1501 tccatccaac ttcactccat ctaaattaat tcgccttgca tcaagctcgc caagcgcccc
     1561 acccgttaaa tcacaaccag taaaatcagc caaagaccaa tcaaacgatg aaaactcccc
     1621 acaagaaaga tcggagccac gaaacacggc gccagttatc acagtgccat tccagcgatt
     1681 ttcccacagt tcgcactttt ctaatatgac tctagaaaaa ttagcgtaac taagatttgt
     1741 cttggttata taagcactac aaaaccatga ccttgtagtt atcatattca taaaattagc
     1801 ccctcgaaaa tcagctcctt gagctaaaca ctcactaatt tcaagaccta aggcgctaat
     1861 gtttttaaaa ttactcattg ataaatcgca gcttttaaag ctagcgtttt ttagtttggc
     1921 tctattaaaa tcacaccctt ccaagctatt cctgtcgtaa aaactacaat caacaaattc
     1981 agtatcagtt aaatcaaccc ctgaaaaatc acaatttgaa aaggcaatat ttttaactct
     2041 attccccgta aattgatctc gtgaaaactt ttcattgata aagtgctttt ccatacatgc
     2101 tacacctggt tatttataca gtgcaatcat tgtacattaa tttgaacaac cttaaactct
     2161 agctaaaatt gattcataca atccctttta tgttaaacgg gcgagttagt tagcaaaaac
     2221 ctcccgttca tccccattaa agcccctcga aacgatttta agacacgatc accctataaa
     2281 acacccaaat ctacgctgaa agtttagaac ggttttgcgg gcttctgagt gcgtttttaa
     2341 catcgtgcaa actgacaagt aaaacgatgc gaaatcgctg aaagtcacaa acttgttttg
     2401 tggcaagaag cgatttgacc aaccgagtaa aacgagggcg gtaggctttt tgtttttatc
     2461 ctgatgagcg tccagcgaag aaagggaaaa acagggggag ccgaaacgaa atgacacgcc
     2521 ccagcgatgg caagtgaacc ccagtgaacg tgtttcgttt tgggggcaaa gccccccgtc
     2581 aagcgaagcg tctgaccacc acatttttga gcgaccaaat acaggggcga aaaaaggggg
     2641 tggtcagacg aacgcagtga gtttgacggg cttgggtgaa tggctttttt cgcaggcgtc
     2701 cagccgaaga aaatagccag agggcggagc cttatgtcat tcattttcgt ccagaaaatg
     2761 agtggcattg atactgaaag tatcacgatt tgtttttcaa cttacctatt attttaccta
     2821 ttattctagg tattattcta cctattacag acgaaatagg taaaataata ggtgaaataa
     2881 taggtaaacc taacgttatt tagccttttc ctctagctgt tttagcatcg aaacatcacc
     2941 taataaccgt tgatttttac ctgtgaaaaa gatgatcggg ctgacatttg cattatcaat
     3001 acttcggctt aactgaattc ccatcgcctg ataatcatca tcgtttgtac aatggtataa
     3061 cgctaaaaca agctgacatt gttcaggagt tccgcactct attgcccagc ggatcaactc
     3121 cgaaaaggtc aatccgttcg gtttccagtg ttttttatgc cgtgacgcca acgccttaaa
     3181 tttttcacgc cctcgattgt atttttctgc cccgatcacc ggatcttcac aacgaacccc
     3241 ttgaaccggt cgcttatcaa atgacaattc ccataatttt atttcttcga tgtattcgta
     3301 atctgctggc gatgccaaac gaaataattg agacatagtg atcccctcag atgatgtgtg
     3361 aacggagaca gtataaggct ttcgggaaat tccgcttcct cgacgtgaaa caagttcacg
     3421 ccttgcggcg agcgttgcga gttgaattta cagaagttat taggcttcag atgtaacaaa
     3481 gccccgtgac agggtcatgg ggctctggta ctctaaatct tgtgcattca ttgctaaaga
     3541 tttcgatgtg gtaatccaat cttagcaatg ggaagctagc ttgtcactac ttccttaaaa
     3601 ccattcaacg acattaactc aaatgcacca cttgattgac tcggacttag cccggtctcc
     3661 gaaaggataa acaggcaaat tgtggtagta aaacgtaccg gaacacgaaa ttccggctct
     3721 gcctccgaat cacgctgcgg tatcgaaaga ttacagtgcg tacctgataa gagcaccaat
     3781 caacggacta gggatttctt ggattgcgaa gtgtcgaaag aaacccaacc taaccagact
     3841 tagctaatag aacaagctaa ggagccatga cccaataacc gatcatggag aaaagcaaag
     3901 acaagatgat gttgtcgctt cgctccgttt tgattagtac cacattgggg cattaggcac
     3961 ttatatacaa aaaaatatca gtcaataaag atattgctag cgccctctga cgaactaact
     4021 tccacatttt caaaactacc aataggatac tcagtttgat taagcgttat acttatttct
     4081 gcaccgcatt cactacaggt tgtttcaatt tcagtccagt gttcaacttt cggccccata
     4141 ttgccctcat ccccttcaga ccaagtatcg taatcatcag actcaactga attttcagtc
     4201 ccacacgcat cacacacaaa agtaactgta ctcataagga atcccacaat gcccatgtaa
     4261 aaagtaagtg ttatatatgg acaatataag acaatttaaa gtgcatacgt tataaagttt
     4321 gtaattcgtt ttatatatca attttaaagc tatggagaac gaaaatttgc tcaagaaaat
     4381 cacgcaagaa tgggaaatac tgaaaattgt aatgagccta tcgattttta gtacgactaa
     4441 tcccttttat gttaaacggg cgagttagtt agcaaaaacc tcccgttcat ccccattaaa
     4501 gcccctcgaa acgattttaa gacacgatca ccctataaaa cacccaaatc tacgctgaaa
     4561 gtttagaacg gttttgcggg cttctgagtg cgtttttaac atcgtgcaaa ctgacaagta
     4621 aaacgatgcg aaatcgctga aagtcacaaa cttgttttgt ggcaagaagc gatttgacca
     4681 accgagtaaa acgagggcgg taggcttttt gtttttatcc tgatgagcgt ccagcgaaga
     4741 aagggaaaaa cagggggagc cgaaacgaaa tgacacgccc cagcgatggc aagtgaaccc
     4801 cagtgaacgt gtttcgtttt gggggcaaag ccccccgtca agcgaagcgt ctgaccacca
     4861 catttttgag cgaccaaata caggggcgaa aaaagggggt ggtcagacga acgcagtgag
     4921 tttgacgggc ttgggtgaat gg
//
