LOCUS       NZ_CP071776             2259 bp    DNA     circular CON 15-JUL-2023
DEFINITION  Proteus mirabilis strain swupm1 plasmid pswupm1.3, complete
            sequence.
ACCESSION   NZ_CP071776
VERSION     NZ_CP071776.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN18275117
            Assembly: GCF_024138795.1
KEYWORDS    RefSeq.
SOURCE      Proteus mirabilis
  ORGANISM  Proteus mirabilis
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Morganellaceae; Proteus.
REFERENCE   1  (bases 1 to 2259)
  AUTHORS   Yi,L.
  TITLE     Proteus mirabilis from fresh-cut fruit
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2259)
  AUTHORS   Yi,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAR-2021) Food Science, Southwest Univerisity,
            Tiansheng road No.2, Chongqing 400417, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. v0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 10.0x
            Sequencing Technology :: Oxford Nanopore MinION; Illumina HiSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 07/15/2023 01:35:59
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,509
            CDSs (total)                      :: 3,399
            Genes (coding)                    :: 3,354
            CDSs (with protein)               :: 3,354
            Genes (RNA)                       :: 110
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 45
            CDSs (without protein)            :: 45
            Pseudo Genes (ambiguous residues) :: 0 of 45
            Pseudo Genes (frameshifted)       :: 17 of 45
            Pseudo Genes (incomplete)         :: 32 of 45
            Pseudo Genes (internal stop)      :: 9 of 45
            Pseudo Genes (multiple problems)  :: 9 of 45
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP071776.1.
            Bacteria and source DNA available from yilanhua.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2259
                     /organism="Proteus mirabilis"
                     /mol_type="genomic DNA"
                     /strain="swupm1"
                     /isolation_source="fresh-cut fruits"
                     /db_xref="taxon:584"
                     /plasmid="pswupm1.3"
                     /geo_loc_name="China"
                     /lat_lon="29 N 106 E"
                     /collection_date="2019-07"
                     /collected_by="yilanhua"
     gene            204..461
                     /locus_tag="J3U92_RS17520"
                     /old_locus_tag="J3U92_17500"
     CDS             204..461
                     /locus_tag="J3U92_RS17520"
                     /old_locus_tag="J3U92_17500"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_253343421.1"
                     /translation="MSTVTFVCDACGTENSVESDDYDTWSEGDEGNMGPKVEHWTEIET
                     TCSECGAEISITLNQTEYPIGSFENVEVSSSEGASNIFID"
                     /name="hypothetical protein"
     gene            1103..1543
                     /locus_tag="J3U92_RS17525"
                     /old_locus_tag="J3U92_17505"
     CDS             1103..1543
                     /locus_tag="J3U92_RS17525"
                     /old_locus_tag="J3U92_17505"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_136135610.1"
                     /translation="MSQLFRLASPADYEYIEEIKLWELSFDKRPVQGVRCEDPVIGAEK
                     YNRGREKFKALASRHKKHWKPNGLTFSELIRWAIECGTPEQCQLVLALYHCTNDDDYQA
                     MGIQLSRSIDNANVSPIIFFTGKNQRLLGDVSMLKQLEEKAK"
                     /name="hypothetical protein"
     Typing          2096..2251
                     /name="Col3M"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="98.089"
                     /coverage="100.0"
                     /evalue="2.29e-71"
ORIGIN
        1 agtcgtacta aaaatcgata ggctcattac aattttcagt atttcccatt cttgcgtgat
       61 tttcttgagc aaattttcgt tctccatagc tttaaaattg atatataaaa cgaattacaa
      121 actttataac gtatgcactt taaattgtct tatattgtcc atatataaca cttacttttt
      181 acatgggcat tgtgggattc cttatgagta cagttacttt tgtgtgtgat gcgtgtggga
      241 ctgaaaattc agttgagtct gatgattacg atacttggtc tgaaggggat gagggcaata
      301 tggggccgaa agttgaacac tggactgaaa ttgaaacaac ctgtagtgaa tgcggtgcag
      361 aaataagtat aacgcttaat caaactgagt atcctattgg tagttttgaa aatgtggaag
      421 ttagttcgtc agagggcgct agcaatatct ttattgactg atattttttt gtatataagt
      481 gcctaatgcc ccaatgtggt actaatcaaa acggagcgaa gcgacaacat catcttgtct
      541 ttgcttttct ccatgatcgg ttattgggtc atggctcctt agcttgttct attagctaag
      601 tctggttagg ttgggtttct ttcgacactt cgcaatccaa gaaatcccta gtccgttgat
      661 tggtgctctt atcaggtacg cactgtaatc tttcgatacc gcagcgtgat tcggaggcag
      721 agccggaatt tcgtgttccg gtacgtttta ctaccacaat ttgcctgttt atcctttcgg
      781 agaccgggct aagtccgagt caatcaagtg gtgcatttga gttaatgtcg ttgaatggtt
      841 ttaaggaagt agtgacaagc tagcttccca ttgctaagat tggattacca catcgaaatc
      901 tttagcaatg aatgcacaag atttagagta ccagagcccc atgaccctgt cacggggctt
      961 tgttacatct gaagcctaat aacttctgta aattcaactc gcaacgctcg ccgcaaggcg
     1021 tgaacttgtt tcacgtcgag gaagcggaat ttcccgaaag ccttatactg tctccgttca
     1081 cacatcatct gaggggatca ctatgtctca attatttcgt ttggcatcgc cagcagatta
     1141 cgaatacatc gaagaaataa aattatggga attgtcattt gataagcgac cggttcaagg
     1201 ggttcgttgt gaagatccgg tgatcggggc agaaaaatac aatcgagggc gtgaaaaatt
     1261 taaggcgttg gcgtcacggc ataaaaaaca ctggaaaccg aacggattga ccttttcgga
     1321 gttgatccgc tgggcaatag agtgcggaac tcctgaacaa tgtcagcttg ttttagcgtt
     1381 ataccattgt acaaacgatg atgattatca ggcgatggga attcagttaa gccgaagtat
     1441 tgataatgca aatgtcagcc cgatcatctt tttcacaggt aaaaatcaac ggttattagg
     1501 tgatgtttcg atgctaaaac agctagagga aaaggctaaa taacgttagg tttacctatt
     1561 atttcaccta ttattttacc tatttcgtct gtaataggta gaataatacc tagaataata
     1621 ggtaaaataa taggtaagtt gaaaaacaaa tcgtgatact ttcagtatca atgccactca
     1681 ttttctggac gaaaatgaat gacataaggc tccgccctct ggctattttc ttcggctgga
     1741 cgcctgcgaa aaaagccatt cacccaagcc cgtcaaactc actgcgttcg tctgaccacc
     1801 cccttttttc gcccctgtat ttggtcgctc aaaaatgtgg tggtcagacg cttcgcttga
     1861 cggggggctt tgcccccaaa acgaaacacg ttcactgggg ttcacttgcc atcgctgggg
     1921 cgtgtcattt cgtttcggct ccccctgttt ttccctttct tcgctggacg ctcatcagga
     1981 taaaaacaaa aagcctaccg ccctcgtttt actcggttgg tcaaatcgct tcttgccaca
     2041 aaacaagttt gtgactttca gcgatttcgc atcgttttac ttgtcagttt gcacgatgtt
     2101 aaaaacgcac tcagaagccc gcaaaaccgt tctaaacttt cagcgtagat ttgggtgttt
     2161 tatagggtga tcgtgtctta aaatcgtttc gaggggcttt aatggggatg aacgggaggt
     2221 ttttgctaac taactcgccc gtttaacata aaagggatt
//
