LOCUS       NZ_CP071775             2683 bp    DNA     circular CON 15-JUL-2023
DEFINITION  Proteus mirabilis strain swupm1 plasmid pswupm1.2, complete
            sequence.
ACCESSION   NZ_CP071775
VERSION     NZ_CP071775.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN18275117
            Assembly: GCF_024138795.1
KEYWORDS    RefSeq.
SOURCE      Proteus mirabilis
  ORGANISM  Proteus mirabilis
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Morganellaceae; Proteus.
REFERENCE   1  (bases 1 to 2683)
  AUTHORS   Yi,L.
  TITLE     Proteus mirabilis from fresh-cut fruit
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2683)
  AUTHORS   Yi,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAR-2021) Food Science, Southwest Univerisity,
            Tiansheng road No.2, Chongqing 400417, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. v0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 10.0x
            Sequencing Technology :: Oxford Nanopore MinION; Illumina HiSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 07/15/2023 01:35:59
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,509
            CDSs (total)                      :: 3,399
            Genes (coding)                    :: 3,354
            CDSs (with protein)               :: 3,354
            Genes (RNA)                       :: 110
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 45
            CDSs (without protein)            :: 45
            Pseudo Genes (ambiguous residues) :: 0 of 45
            Pseudo Genes (frameshifted)       :: 17 of 45
            Pseudo Genes (incomplete)         :: 32 of 45
            Pseudo Genes (internal stop)      :: 9 of 45
            Pseudo Genes (multiple problems)  :: 9 of 45
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP071775.1.
            Bacteria and source DNA available from yilanhua.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2683
                     /organism="Proteus mirabilis"
                     /mol_type="genomic DNA"
                     /strain="swupm1"
                     /isolation_source="fresh-cut fruits"
                     /db_xref="taxon:584"
                     /plasmid="pswupm1.2"
                     /geo_loc_name="China"
                     /lat_lon="29 N 106 E"
                     /collection_date="2019-07"
                     /collected_by="yilanhua"
     gene            86..730
                     /locus_tag="J3U92_RS17510"
                     /old_locus_tag="J3U92_17490"
     CDS             86..730
                     /locus_tag="J3U92_RS17510"
                     /old_locus_tag="J3U92_17490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_032495680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinolone resistance pentapeptide repeat protein
                     QnrD1"
                     /protein_id="WP_012634451.1"
                     /translation="MEKHFINEKFSRDQFTGNRVKNIAFSNCDFSGVDLTDTEFVDCSF
                     YDRNSLEGCDFNRAKLKNASFKSCDLSMSNFKNISALGLEISECLAQGADFRGANFMNM
                     ITTRSWFCSAYITKTNLSYANFSRVILEKCELWENRWNGTVITGAVFRGSDLSCGEFSS
                     FDWSLADFTGCDLTGGALGELDARRINLDGVKLDGEQALQLVESLGVIVHR"
                     /name="quinolone resistance pentapeptide repeat protein
                     QnrD1"
     gene            1368..1808
                     /locus_tag="J3U92_RS17515"
                     /old_locus_tag="J3U92_17495"
     CDS             1368..1808
                     /locus_tag="J3U92_RS17515"
                     /old_locus_tag="J3U92_17495"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_015063446.1"
                     /translation="MSQLFRLASPEDYEYIEELNLWELSFDKRPVQGVRCEDPVIGAEK
                     YNQGREKFKALASRHKKHWKPNGLTFSELIRWAIECGTPEQCQLVLALYHCTNDDDYQA
                     MGIQLSRSIDNANVSPIIFFTGKNQRLLGDISMLKQLEEKVR"
                     /name="hypothetical protein"
     ARG             87..727
                     /name="qnrD1"
                     /gene="qnrD1"
                     /gene_name="quinolone resistance pentapeptide repeat
                     protein QnrD1"
                     /tool="amrfinderplus"
                     /drug_class="QUINOLONE"
                     /identity="100.0"
                     /coverage="100.0"
     Typing          2520..2675
                     /name="Col3M"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="98.089"
                     /coverage="100.0"
                     /evalue="2.29e-71"
ORIGIN
        1 gtatgaatca attttagcta gagtttaagg ttgttcaaat taatgtacaa tgattgcact
       61 gtataaataa ccaggtgtag catgtatgga aaagcacttt atcaatgaaa agttttcacg
      121 agatcaattt acggggaata gagttaaaaa tattgccttt tcaaattgtg atttttcagg
      181 ggttgattta actgatactg aatttgttga ttgtagtttt tacgacagga atagcttgga
      241 agggtgtgat tttaatagag ccaaactaaa aaacgctagc tttaaaagct gcgatttatc
      301 aatgagtaat tttaaaaaca ttagcgcctt aggtcttgaa attagtgagt gtttagctca
      361 aggagctgat tttcgagggg ctaattttat gaatatgata actacaaggt catggttttg
      421 tagtgcttat ataaccaaga caaatcttag ttacgctaat ttttctagag tcatattaga
      481 aaagtgcgaa ctgtgggaaa atcgctggaa tggcactgtg ataactggcg ccgtgtttcg
      541 tggctccgat ctttcttgtg gggagttttc atcgtttgat tggtctttgg ctgattttac
      601 tggttgtgat ttaacgggtg gggcgcttgg cgagcttgat gcaaggcgaa ttaatttaga
      661 tggagtgaag ttggatggag agcaggcgct tcagcttgtt gagagtttag gtgttattgt
      721 tcaccgataa aatctaggta aaaaacgcct aatgccccaa tgtggtacta atcaaaacgg
      781 agcgaagcga catcttcatc ttgtctttgc ttttctccat gatcagttat tgggtcatgg
      841 tctcttagct cgttaatctg gctaagtttg gttaggttgg gcttctttcg acacttcgca
      901 atccaagaaa tccctagtcc gttgattggt gctcttatca ggtacgcact gtaatctttc
      961 gataccgcag cgtgattcgg aggtagagcc ggaatttcgt tttccggtac gttttactac
     1021 cacaatttgc ctgtttatcc tttcggagac cgggctaagt ccgagtcaat caagtggtgc
     1081 atttgggtta atgtcgttgg ctggtattta atgagaacgt gacaagcgcc tctcacgttg
     1141 ctaagattgg attgcgacgt ctaatctgag caacgaatgc acaagattta gagtaccaga
     1201 gccctgtgat gctgtcacgg ggctttgtta catctggagc ttggtaaacc tcataaattc
     1261 aattcgcaac gctcgccgca aggcgtgaac ttgtttcacg tcgaggaagc ggaatttctc
     1321 gaaagcctta tactgtctcc gttcacacat gatcggaggg tgtctctatg tctcaattat
     1381 ttcgtttggc atcgccagaa gattacgaat acatcgaaga attaaattta tgggaattgt
     1441 catttgataa gcgaccggtt caaggggttc gttgtgaaga tccggtgatc ggggcagaaa
     1501 aatataatca agggcgtgaa aaatttaagg cgttagcgtc acggcataaa aaacactgga
     1561 aaccgaacgg attgaccttt tcggagttga tccgctgggc aatagaatgc ggaactccag
     1621 aacaatgtca gcttgtttta gcgttatacc attgcacaaa cgatgatgat tatcaggcga
     1681 tgggaattca gttaagccga agtattgata atgcaaatgt cagtccgatc atctttttca
     1741 caggtaaaaa tcaacggtta ttaggtgata tttcgatgct aaaacagctc gaagaaaagg
     1801 tgcgctgacg ttaggtttac ctattatttt atgtattatc ctatctatta ttctatctct
     1861 tattttatct atttcgtctg taataggtag aataatacat agaataagat acagaataat
     1921 agatagacac aagatgacgt tgtgttattt cttacctatt aatccacctg ttattctacc
     1981 tattacttta cccgttattg cacccaattt aggtataacg ggcagaataa cgggtgaaat
     2041 aatgggtaga atcatagttt tactaacttg caccccatga tactttcagt atcaatgcca
     2101 ctcattttct ggacgaaaat gaatgacata aggctccgcc ctctggctat tttcttcggc
     2161 tggacgcctg cgaaaaaaac cattcaccca agcccgtcaa actcactgcg ttcgtctgac
     2221 cacccccttt tttcgcccct gtatttggtc gctcaaaaat gtggtggtca gacgcttcgc
     2281 ttgacggggg gctttgcccc caaaacgaaa cacgttcact ggggttcact tgccatcgct
     2341 ggggcgtgtc atttcgtttc ggctccccct gtttttccct ttcttcgctg gacgctcatc
     2401 aggataaaaa caaaaagcct accgccctcg ttttactcgg ttggtcaaat cgcttcttgc
     2461 cacaaaacaa gtttgtgact ttcagcgatt tcgcatcgtt ttacttgtca gtttgcacga
     2521 tgttaaaaac gcactcagaa gcccgcaaaa ccgttctaaa ctttcagcgt agatttgggt
     2581 gttttatagg gtgatcgtgt cttaaaatcg tttcgagggg ctttaatggg gatgaacggg
     2641 aggtttttgc taactaactc gcccgtttaa cataaaaggg att
//
