LOCUS       NZ_CP071774             4875 bp    DNA     circular CON 15-JUL-2023
DEFINITION  Proteus mirabilis strain swupm1 plasmid pswupm1.1, complete
            sequence.
ACCESSION   NZ_CP071774
VERSION     NZ_CP071774.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN18275117
            Assembly: GCF_024138795.1
KEYWORDS    RefSeq.
SOURCE      Proteus mirabilis
  ORGANISM  Proteus mirabilis
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Morganellaceae; Proteus.
REFERENCE   1  (bases 1 to 4875)
  AUTHORS   Yi,L.
  TITLE     Proteus mirabilis from fresh-cut fruit
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4875)
  AUTHORS   Yi,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAR-2021) Food Science, Southwest Univerisity,
            Tiansheng road No.2, Chongqing 400417, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. v0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 10.0x
            Sequencing Technology :: Oxford Nanopore MinION; Illumina HiSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 07/15/2023 01:35:59
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,509
            CDSs (total)                      :: 3,399
            Genes (coding)                    :: 3,354
            CDSs (with protein)               :: 3,354
            Genes (RNA)                       :: 110
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 45
            CDSs (without protein)            :: 45
            Pseudo Genes (ambiguous residues) :: 0 of 45
            Pseudo Genes (frameshifted)       :: 17 of 45
            Pseudo Genes (incomplete)         :: 32 of 45
            Pseudo Genes (internal stop)      :: 9 of 45
            Pseudo Genes (multiple problems)  :: 9 of 45
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP071774.1.
            Bacteria and source DNA available from yilanhua.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4875
                     /organism="Proteus mirabilis"
                     /mol_type="genomic DNA"
                     /strain="swupm1"
                     /isolation_source="fresh-cut fruits"
                     /db_xref="taxon:584"
                     /plasmid="pswupm1.1"
                     /geo_loc_name="China"
                     /lat_lon="29 N 106 E"
                     /collection_date="2019-07"
                     /collected_by="yilanhua"
     gene            complement(63..212)
                     /locus_tag="J3U92_RS17580"
                     /pseudo=""
     CDS             complement(63..212)
                     /locus_tag="J3U92_RS17580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001396189.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /name="replication initiation protein"
     gene            complement(479..667)
                     /locus_tag="J3U92_RS17485"
                     /old_locus_tag="J3U92_17465"
     CDS             complement(479..667)
                     /locus_tag="J3U92_RS17485"
                     /old_locus_tag="J3U92_17465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_196572938.1"
                     /translation="MTKQEKAVVNMAKFLQAQSLLLLEKLNELDSNNLDAETNLCEELH
                     EQAESLHQRLSAKLEGE"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            814..1125
                     /locus_tag="J3U92_RS17490"
                     /old_locus_tag="J3U92_17470"
     CDS             814..1125
                     /locus_tag="J3U92_RS17490"
                     /old_locus_tag="J3U92_17470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005618548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_196572939.1"
                     /translation="MTTKRTETVIIRLTPDEKQSLLLRKTKPRLAEWLRELALGQKPKR
                     QPKSVDPALLFELNRIGVNLNQIARHCHQAPVSMETVNIALALRHIEALLREVLERAD"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            1115..2527
                     /locus_tag="J3U92_RS17495"
                     /old_locus_tag="J3U92_17475"
     CDS             1115..2527
                     /locus_tag="J3U92_RS17495"
                     /old_locus_tag="J3U92_17475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012478624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /protein_id="WP_196572940.1"
                     /translation="MLIKFFGNKGGGSPKASMDYLLREGKKDTKFQVLRGDPELSQSIA
                     ESCGFKNAYTVGCLSFEEENIPDHHKTAIMDRFEKHVFAGLEKEQYNITWVEHTDKNRL
                     ELNFYIPNVELTSLKRLQPYYDKADRPLIENFKQVINHEYGLSDPRSPDKQQTLITRAD
                     LPTEKRSALKEIDAGISALVQKGLIRNRDDVIEALKQSGFEIARVTPKNLSIKTEGQNL
                     RLKGAFYEQDFKFSADVLRECQTRQRDYDGESEARYRTARERLESATGRRQQEFERKYP
                     SRADEIDQAYRERVETTLHHHGRTDDYIGRDQSVSHVLERERIPEPDRVETVSRDIPDA
                     EPQYQTDQLHHGRQEQTTVRRRRSKISERKLGREERTLPNSSEVSHHDRDGTTLRERLE
                     HLVTTARDRYQQFISACRGARNTEQSVSHAIQGNQSTVSDFNRTAEQVSERLTQQIQRQ
                     EQKRSRGFSIGF"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            complement(2777..3757)
                     /locus_tag="J3U92_RS17500"
                     /old_locus_tag="J3U92_17480"
     CDS             complement(2777..3757)
                     /locus_tag="J3U92_RS17500"
                     /old_locus_tag="J3U92_17480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012857487.1"
                     /GO_function="GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA cytosine methyltransferase"
                     /protein_id="WP_196572941.1"
                     /translation="MNIASLFSGAGGLDLGFELAGFNISWSNEFDKTIWETHKRNFPNC
                     ILDQRSIVEVQGNDIPEISGFIGGPPCQSWSEAGSRKGIDDHRGQLFYEYIRLLNEKKP
                     LFFLAENVSGILHKKHEDAFNNILKSFEDSGYNISFKLLNANDYNVPQDRLRVFIVGIR
                     KEYKDIFFKFPEPFGFNLKLKDYIFDIKDNAVPSDEKNKSNRNTLIPNHEYMTGGFSSI
                     FMSRNRVRSWEEPSFTIQAGGRHAPIHPNAPKMIKLETDKFEFVKEKEKFYRRMSIREC
                     ARVQTFPDSFIFEYNSVVDGYKMVGNAVPVNLARVLAEQIKKQLF"
                     /name="DNA cytosine methyltransferase"
     gene            complement(3854..4738)
                     /locus_tag="J3U92_RS17505"
                     /old_locus_tag="J3U92_17485"
     CDS             complement(3854..4738)
                     /locus_tag="J3U92_RS17505"
                     /old_locus_tag="J3U92_17485"
                     /EC_number="3.1.21.-"
                     /inference="COORDINATES: protein motif:HMM:NF021097.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HaeIII family restriction endonuclease"
                     /protein_id="WP_196572937.1"
                     /translation="MASTSNDNGRAFEYCLTKYILDNSSSKIDIDNETKNQQARDESKY
                     ENLSPELKILFSNASKRYFELLPTTIFSLKRLSDNEGKDGNPTDIELIFIENGLPKTKN
                     ISLKNNHNAVKHQRPGSLISQLGISDKNEDNLYRECIKSLERTFISSVESLGFNTSNEL
                     LFSDIKSCSEQVILDLYNSFCSLTASVINKFGSIHAGDYFHFLVSRTDFEKLIVYPNKI
                     IIQEWYKLPTPSAMTAFVSDNSYVNVIFNNGYTFKMRLHNASSRFKKGSSISLKFDTRL
                     EESAKIPTSEFFI"
                     /name="HaeIII family restriction endonuclease"
     Typing          815..1122
                     /name="MOBF"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="96.117"
                     /coverage="100.0"
                     /evalue="1.41e-58"
ORIGIN
        1 gtaacagggt ctgaacaccg ctgaaaccaa attctgtcct atcagtttag ccgtaatgac
       61 ggtcagacat caaggatttc agcaaacaat tctgcactct tgttaccaaa ggctatcgcc
      121 agtggcgttt ttgcgtgtct gtcagggttg gattcaagag aacagttacc tgaacaggcg
      181 tgatagtcgg gctaaacggg gagttcgtgc aaatagccca gcttggagcg aaccacctaa
      241 gcaagcgcag tgccggtaca gggaagctga gagatagcgc ccccaaagat ggaaagagcg
      301 gattaaaacc ggctgtaaac ttgtaaggtg ggaacaggag agcgcacgag ggagccgtca
      361 gagggaaact tctgatatct cgatagtcct gtcgggtttc gccactcttg actagagcac
      421 cgaaaatcag tcgatttttg tgaagctcgt caggagggcg gagcctattg taaaagggct
      481 actcaccttc tagttttgcg ctcagtcgtt ggtgtagtga ctctgcttgt tcgtggagtt
      541 cttcgcatag gttggtttcc gcatcgagat tatttgaatc tagctcattc agtttctcca
      601 gtaagaggag actctgagcc tgtaaaaact tcgccatgtt tacgacagct ttttcctgct
      661 tcgtcatctg tcaaatccca ttatttcttc gctgattgta caaaatctta tctgctgtta
      721 atgtttaggg caaggacaca catcgttatc tctgcgagat ttcctcgtga ccttgcaatg
      781 ggcttcgccc cttgacccca aaaggacaac agcatgacga ccaaacgcac cgaaaccgtg
      841 attattcgtt tgacacctga cgagaaacaa tcgttacttc tgcggaaaac caaaccccgt
      901 ttggctgagt ggttacgtga actggcgcta ggtcagaaac ctaaacgtca gccgaaaagc
      961 gtagatcccg cattgttgtt tgagcttaac cggataggtg tgaacctcaa tcagatagcc
     1021 cgtcattgtc atcaggcgcc ggtctcgatg gagacggtca atattgcctt agcgttacga
     1081 catatcgagg cactgcttcg tgaggtgctc gagcgtgctg attaaattct ttggtaacaa
     1141 aggcggtggt agtccgaaag ccagcatgga ttatctgctt cgtgagggta aaaaggacac
     1201 aaaatttcag gtcttacggg gtgatcctga attgtcgcag tctattgcgg agagttgcgg
     1261 atttaagaat gcgtacaccg tggggtgtct gtcatttgag gaagaaaata tacccgacca
     1321 tcacaaaacc gccattatgg acagatttga aaagcacgtt tttgcggggc tggagaaaga
     1381 gcagtacaac atcacatggg ttgagcatac ggataaaaac cggttagagc tgaattttta
     1441 catccctaac gtcgagctta cctcactgaa acgcttacaa ccttactatg acaaagcaga
     1501 cagaccgctg attgaaaatt ttaagcaggt tatcaatcat gaatacggac tttctgatcc
     1561 ccgttcgccg gataaacagc aaacgctgat aacccgtgcg gacttaccga cagaaaaacg
     1621 gtcagccctg aaagagattg atgccggcat atcggcatta gtgcagaaag gactgatccg
     1681 caaccgtgat gatgtgattg aagcgctgaa acagtcaggc tttgagatag ccagagtgac
     1741 accgaaaaac ctctcaatca aaaccgaggg gcaaaattta cgtttaaaag gggcgttcta
     1801 tgagcaggat tttaaattta gcgcagacgt tctccgagaa tgccagacaa gacagcgaga
     1861 ttatgacgga gaaagtgaag ctcgctatcg aacagcacga gaacgacttg aaagcgcaac
     1921 tggcagacgc cagcaggagt ttgagcgaaa gtatccaagc cgagcagatg aaattgatca
     1981 ggcgtaccgt gagcgtgtgg aaactaccct tcatcatcat gggcgtactg atgattatat
     2041 tggcagggat cagtctgttt ctcacgtact ggagcgtgag cgaataccag aacctgaccg
     2101 agtggaaacg gtcagccgag atataccaga cgcagagcca caatatcaaa ctgaccaact
     2161 gcatcatgga agacaagagc aaacgactgt gcgccgccgt cgatccaaaa tatcagagcg
     2221 aaaactgggg cgagaagaac gaaccctacc gaattctagc gaagtgagcc accatgaccg
     2281 agacggaaca actcttagag aacgccttga gcaccttgtt acaacagcaa gagatcgtta
     2341 tcagcaattt atctcagcgt gtcggggagc tcgaaataca gaacagtcag ttagccatgc
     2401 aatacaggga aatcagtcaa cagttagcga ctttaaccgg actgctgaac aggtatcaga
     2461 acggctgaca cagcagatcc aacgacagga gcagaaacgg agtcgggggt tcagtatcgg
     2521 tttttaacgg ataaaaccgt ttcaagccac aaacaagttt gcgactttca ccggtttggc
     2581 gatgaaaacc ggacgaaaaa aaggaatgtt aaaaacgccc taaaacgtca cagaaaccgt
     2641 tctaaacttt caggatggat ttgggtgtta tggggtgtgt ttggtgctta aaatcgcgct
     2701 gaggcgttct gatggtgtta aacgggcggt tttgagtagt aaactcgccc gtttaacata
     2761 atgggtctta tgggaactag aaaagttgtt tttttatttg ttcggctaaa actcttgcta
     2821 gattaacagg aactgcattt ccgaccattt tataaccatc tacaactgaa ttatattcaa
     2881 atataaatga gtcaggaaag gtttgaactc tggcgcattc tctaatactc atccttctat
     2941 aaaatttttc tttttctttc acaaactcaa atttatctgt ttctagcttt atcattttgg
     3001 gtgcattagg gtgtattggg gcatgacgtc ctcctgcttg gattgtgaat gacggttcct
     3061 cccaactacg aactctattt cgagacatga atatagatga aaatccacct gtcatatatt
     3121 catggttagg tattaatgta tttctattag atttattctt ttcatcagat ggaacggcat
     3181 tatcttttat atcaaaaata taatctttta attttaaatt aaagccaaaa ggctctggga
     3241 atttaaagaa tatatccttg tattcttttc ttattccaac tataaatact ctaagtctat
     3301 cttgaggtac attataatca tttgcattta ataatttaaa tgaaatatta tacccagaat
     3361 cttcaaatga ctttaatata ttattaaaag catcttcatg cttcttgtgt aatatgcctg
     3421 atacattttc agctaaaaaa aacagaggtt ttttttcatt taaaaggcga atgtattcat
     3481 aaaacaattg acctctatga tcatctattc ctttcctact tcctgcttct gaccagcttt
     3541 gacaaggagg tccaccaata aatccagata tttcaggtat atcattgcct tgaacttcga
     3601 ctatggaacg ttgatctagt atacaattag ggaagtttct tttatgtgtt tcccatattg
     3661 ttttatcaaa ctcattcgac caggaaatat taaatccagc caattcaaaa ccaaggtcta
     3721 gaccaccagc tccggagaat aaagacgcaa tattaatttc actcatgatt tgtcttcact
     3781 ttaactatag agacattatg attacatata gaaaaagaaa aggccagaaa aaccttttct
     3841 ttttttatct taattatatg aaaaattcag aggttggtat tttagcggat tcttcaagtc
     3901 tggtatcaaa cttaagtgat atagatgatc cttttttgaa tctagatgat gcattatgca
     3961 atctcatttt gaatgtatag ccattattaa aaataacatt tacgtagcta ttatcagaaa
     4021 cgaatgcggt cattgctgat ggtgttggta atttatacca ctcttgtatg attattttat
     4081 ttgggtaaac gattagtttt tcaaagtcag ttcttgatac taaaaaatgg aagtaatcac
     4141 cggcatgaat agaaccaaac ttattgatta cactagcagt aagagagcag aaactgttat
     4201 ataggtctaa aataacttgt tctgaacatg attttatatc ggagaatagt agttcgttgc
     4261 tagtgttaaa tcctagagac tcaacactag atataaatgt tctttctaat gattttatac
     4321 attccctgta aagattgtct tcatttttat ctgatatacc tagttgagat attagagagc
     4381 ccggtctttg atgctttact gcattatgat tgtttttcag agagatattt ttagtttttg
     4441 gtaaaccatt ttctatgaaa attagctcaa tgtctgttgg attcccatct ttaccttcgt
     4501 tatcacttaa tctttttaac gaaaatatag ttgtaggcag taattcaaaa tatcttttcg
     4561 atgcgttact aaaaaggatt ttcaattctg gtgatagatt ttcatattta ctttcatctc
     4621 tagcttgttg attttttgtt tcattatcaa tatctatctt actagatgag ttgtctaaaa
     4681 tgtatttagt taagcaatac tcaaatgctc taccgttatc attcgatgtt gaagccattt
     4741 tatacctctt aataaaaaaa gtagtttcct gtaagggggg agatcgggta gtcttagtga
     4801 cgtaaaaaaa aaccgcctca gcaaaggcgg ttttcttaaa ggttggttca tagagcagca
     4861 actctttgaa ccgag
//
