LOCUS       NZ_CP070573             4515 bp    DNA     circular CON 29-APR-2024
DEFINITION  Proteus mirabilis strain PM52808 plasmid p52808_1, complete
            sequence.
ACCESSION   NZ_CP070573
VERSION     NZ_CP070573.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16933297
            Assembly: GCF_016939735.1
KEYWORDS    RefSeq.
SOURCE      Proteus mirabilis
  ORGANISM  Proteus mirabilis
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Morganellaceae; Proteus.
REFERENCE   1  (bases 1 to 4515)
  AUTHORS   Kraftova,L., Finianos,M., Studentova,V., Chudejova,K., Jakubu,V.,
            Zemlickova,H., Papagiannitsis,C.C., Bitar,I. and Hrabak,J.
  TITLE     Evidence of an epidemic spread of KPC-producing Enterobacterales in
            Czech hospitals
  JOURNAL   Sci Rep 11 (1), 15732 (2021)
   PUBMED   34344951
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4515)
  AUTHORS   Bitar,I.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-FEB-2021) Microbiology, Charles University in Prague,
            Alej Svobody 1655/76, Plzen 1 32300, Czech Republic
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Microbial Assembly v. 1.1
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 250X
            Sequencing Technology             :: PacBio Sequel
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_016939735.1-RS_2024_04_29
            Annotation Date                   :: 04/29/2024 03:36:26
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,063
            CDSs (total)                      :: 3,951
            Genes (coding)                    :: 3,854
            CDSs (with protein)               :: 3,854
            Genes (RNA)                       :: 112
            rRNAs                             :: 9, 7, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 7, 8 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 97
            CDSs (without protein)            :: 97
            Pseudo Genes (ambiguous residues) :: 0 of 97
            Pseudo Genes (frameshifted)       :: 31 of 97
            Pseudo Genes (incomplete)         :: 68 of 97
            Pseudo Genes (internal stop)      :: 18 of 97
            Pseudo Genes (multiple problems)  :: 16 of 97
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP070573.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4515
                     /organism="Proteus mirabilis"
                     /mol_type="genomic DNA"
                     /strain="PM52808"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:584"
                     /plasmid="p52808_1"
                     /geo_loc_name="Czech Republic: Nymburk"
                     /lat_lon="50.18 N 15.03 E"
                     /collection_date="2019-09-03"
                     /collected_by="Nemocnice Nymburk"
     gene            436..639
                     /locus_tag="JW302_RS20475"
     CDS             436..639
                     /locus_tag="JW302_RS20475"
                     /inference="COORDINATES: protein motif:HMM:NF012514.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_240349993.1"
                     /translation="MQCDMQPIGTILYNEKVTDDLIEHEFDHLFLGFSDKTPQCHPDEV
                     MGHRWISLNELYHDVEKHPEKL"
                     /name="hypothetical protein"
     gene            complement(834..949)
                     /gene="rrf"
                     /locus_tag="JW302_RS19450"
                     /old_locus_tag="JW302_19450"
     rRNA            complement(834..949)
                     /gene="rrf"
                     /locus_tag="JW302_RS19450"
                     /old_locus_tag="JW302_19450"
                     /product="5S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00001"
                     /inference="COORDINATES: profile:INFERNAL:1.1.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00001"
                     /name="rrf"
     gene            complement(1062..3966)
                     /locus_tag="JW302_RS19455"
                     /old_locus_tag="JW302_19455"
     rRNA            complement(1062..3966)
                     /locus_tag="JW302_RS19455"
                     /old_locus_tag="JW302_19455"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
                     /name="23S ribosomal RNA"
     gene            complement(4211..4284)
                     /locus_tag="JW302_RS19460"
                     /old_locus_tag="JW302_19460"
     tRNA            complement(4211..4284)
                     /locus_tag="JW302_RS19460"
                     /old_locus_tag="JW302_19460"
                     /product="tRNA-Glu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4249..4251),aa:Glu,seq:ttc)
                     /name="tRNA-Glu"
     misc_feature    complement(4368..4515)
                     /note="16S ribosomal RNA rRNA prediction is too short"
ORIGIN
        1 atccccttaa agcttcagtt aaacctagaa aactaaacaa ctatattatg atgttatcag
       61 tagcgttacc cactaatacc attaaaggaa caacacaatt aaccattatt tgatatacat
      121 gcatggtata ttcgcgttat aactctcttt tatttttacc aaggtgattt ttgtgaaaga
      181 gccgtgattc ctcgttgata aaaaatgaca atgagctagg aaccatgcca agctggaggc
      241 acatattgct ggtgccttac atagagcctt tcattattta ttttcaattc taagcaacaa
      301 atgttgattc cagcaacgag cactgactaa atatcactct ggtggtctat gggcgaatac
      361 ttgttgtagc catcctttac ccaatgaacc tcctatcaca aggcaataca tcggcgttta
      421 aatgaagaat taggtatgca gtgtgatatg caacctattg gtacgatttt atataatgaa
      481 aaagtcacgg atgatcttat tgagcatgag tttgatcatc tttttttagg ctttagtgat
      541 aaaacaccgc agtgtcatcc cgatgaagtt atgggtcatc gttggatttc attaaacgag
      601 ctttatcatg atgtagaaaa acatcctgaa aaactatagt gcatggttct gccatatatt
      661 aatggctctt ggtatagagc agtttactcg atggagtaaa aatacttata gttgctctct
      721 tattgaaatt gatatttaac tataaaaaaa gtgttagcat gactcaaggt aaaatacgat
      781 cttccaaaag caaaaaaagc caacccatgg gttggctttc tcgtcttatt taatgcttgc
      841 agttccctac tctcacatgg ggagacccca cactaccatc ggcgctacgg cgtttcactt
      901 ctgagttcgg catgggatca ggtgggacca ccgcgctatg gccgccaagc aattcggttt
      961 taatcactcg cttctttcct ttcggtaagt cgccagtaat ttaatcttga acaagctgac
     1021 ttcatcgttt cgtctctctg acaaaacact ttcggtgttg tcaggttaag cctcacggtt
     1081 cattagtact ggttagctca acgtatcgct acgcttacac acccagccta tcaacgtctt
     1141 agtcttaaac gttcctttag gtcacttaaa gcgacaggga agactcatct cgaggcaagt
     1201 ttcccgctta gatgctttca gcggttatct cttccgcact tagctaccgg gcaatgccat
     1261 tggcatgaca acccgaacac cagtggtgcg ttcactccgg tcctctcgta ctaggagcaa
     1321 cccctctcaa tcttccaacg cccacggcag atagggaccg aactgtctca cgacgttcta
     1381 aacccagctc gcgtaccact ttaaatggcg aacagccata cccttgggac ctacttcagc
     1441 cccaggatgt gatgagccga catcgaggtg ccaaacaccg ccgtcgatat gaactcttgg
     1501 gcggtatcag cctgttatcc ccggagtacc ttttatccgt tgagcgatgg cccttccatt
     1561 cagaaccacc ggatcactaa gacctacttt cgtacctgct cgagccgtca ctctcgcagt
     1621 caagctggct tatgcctttg cactaaccgc atgatgtccg accatgctta gccaaccttc
     1681 gtgctcctcc gttactcttt aggaggagac cgccccagtc aaactaccca ccagacacgg
     1741 tccccgaccc agtttatggg cctaggttag aacatcaaac gttaaagggt ggtatttcaa
     1801 ggttggctcc atgcagactg gcgtccacac ttcaaagcct cccacctatc ctacacatca
     1861 aggctcaatg ttcagtgtca agctatagta aaggttcacg gggtctttcc gtcttgccgc
     1921 gggtacactg catcttcaca gcgagttcaa tttcactgag tctcgggtgg agacagcctg
     1981 gccatcatta cgccattcgt gcaggtcgga acttacccga caaggaattt cgctacctta
     2041 ggaccgttat agttacggcc gccgtttact ggggcttcga tcaggagctt cgccttgcgg
     2101 ctgaccccat caattaacct tccagcaccg ggcaggcgtc acaccgtata cgtccacttt
     2161 cgtgtttgca cagtgctgtg tttttaataa acagttgcag ccagctggta tcttcgactg
     2221 gcttcagcgc cgtccgcgag ggactttacc taccgccagc gtgccttctc ccgaagttac
     2281 ggcaccattt tgcctagttc cttcaccgag ttctctcaag cgcctgagta ttctctacct
     2341 gaccacctgt gtcggtttgg ggctgttggg agatgttggt aacctgaagc ttagaggctt
     2401 ttcctggaag cggggcatca attgcttcac caccttggtg gttcgtcatc acatctcagc
     2461 attaagtgac cggatttgcc taatcactct gcctacctgc ttgaaccggg acgaccgtcg
     2521 cccggacaac ctagccttct ccgttccccc atcgcagtta ccaccagtac gggaatatta
     2581 acccgtttcc catcgactac gcttttcagc ctcgccttag gggtcgactc accctgcccc
     2641 gattaacgtt ggacaggaac ccttggtctt ccggcgtgcg ggtttttcac ccgcattatc
     2701 gttacttatg tcagcattcg cacttctgat acctccagca tacctcacag tacaccttcg
     2761 caggcttaca gaacgctccc ctacccaaca acactttgtg tcgctgccgc agcttcggtg
     2821 catggtttag ccccgttaca tcttccgcgc gggccgactc gaccagtgag ctattacgct
     2881 ttctttaaat gatggctgct tctaagccaa catcctggct gtctgagcct tcccacttcg
     2941 tttcccactt aaccatgact ttgggacctt agctggcggt ctgggttgtt tccctcttca
     3001 cgacggacgt tagcacccgc cgtgtgtctc ccgtgataac attcttcggt attcgcagtt
     3061 tgcatcgagt tggtaagtcg ggatgacccc ctagtcgaaa cagtgctcta cccccgaaga
     3121 tgagttcacg aggcgctacc taaatagctt tcggggagaa ccagctatct cccggtttga
     3181 ttggcctttc acccccatcc acaagtcatc cgctaatttt tcaacattag tcggttcggt
     3241 cctccagtta gtgttaccca accttcaact gcccatggat agatcaccgg gtttcgggtc
     3301 tataccctgc aactcattcg cccagttaag actcggtttc cctacgctcc cctatacggt
     3361 taaccttgct acagaatata agtcgctgac ccattataca aaaggtacgc agtcacccat
     3421 aaagaggctc ctactgcttg tacgtacacg gtttcaggtt ctttttcact cccctcgccg
     3481 gggttctttt cgcctttccc tcacggtact ggttcactat cgtcgatcaa taggagtaag
     3541 tagccttgga gatggtcccc ccatattcag acaggataac acgtgtcccg ccctactcgt
     3601 cgagttcaca taacagcatc ttcagatacg gggctatcac cctttactgc cggactttcc
     3661 agaccgttct cctgacactg ctattgatta agactctggg ctgctcagtt cgctcgccgc
     3721 tactagggga atctcggttg atttcttttc ctcggggtac tgagatgttt cttagttctc
     3781 ccggttcgcc tcattaacct atggattcag ttaatgatag tatccattgg atactgggtt
     3841 tccccattcg gatatcgtcg ggtataacgg ttcatatcac cttaccgacg cttttcgcag
     3901 attagcacgt ccttcatcgc ctctgattgc ctaggcaatc caccgtgtac gcttattcgc
     3961 ttaaccctca caacccgaaa gtgtcttttc aaagataatt actttggggg cgctgcacaa
     4021 ctttaggttg ctgagatgtt tgagagactc accaatttga tccatcgttg atatattgat
     4081 ttgttttcaa tttttcagct tgttccagat tgttaaagag cataataagt aagataactc
     4141 gtttgaatta gcttagttat tctctgactc tcgtcagata agtggtacgc ctttcactca
     4201 taccgcgcat tggcgtcccc tagggattcg aacccctgtt accgccgtga aagggcggtg
     4261 tcctaggcct ctagacgaag ggacttctgt cagcttcgca ggacgcgctt ttgctcgttc
     4321 tcatcagaca atctgtgtga acacttcaca taacacgtat ctcttagtaa ggaggtgatc
     4381 caaccgcagg ttcccctacg gttaccttgt tacgacttca ccccagtcat gaatcacaaa
     4441 gtggtaagcg ccctccgaag gttaagctac ctacttcttt tgcaacccac tcccatggtg
     4501 tgacgggcgg tgtgt
//
