LOCUS       NZ_CP070458             2113 bp    DNA     circular CON 05-JAN-2024
DEFINITION  Klebsiella quasipneumoniae strain B25110 plasmid p4B25110, complete
            sequence.
ACCESSION   NZ_CP070458
VERSION     NZ_CP070458.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN17915108
            Assembly: GCF_016925395.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella quasipneumoniae
  ORGANISM  Klebsiella quasipneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 2113)
  AUTHORS   Veeraraghavan,B., Varghese,G.M. and Vijayakumar,S.
  TITLE     Multidrug resistant Klebsiella pneumoniae_B25110_hybrid assembly
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2113)
  AUTHORS   Veeraraghavan,B., Varghese,G.M. and Vijayakumar,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-FEB-2021) Clinical Microbiology, Christian Medical
            College, Ida Scudder road, Vellore 632004, India
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Canu v. 1.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 106.0x
            Sequencing Technology             :: Illumina; Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/05/2024 07:50:37
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,462
            CDSs (total)                      :: 5,333
            Genes (coding)                    :: 5,209
            CDSs (with protein)               :: 5,209
            Genes (RNA)                       :: 129
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 88
            ncRNAs                            :: 16
            Pseudo Genes (total)              :: 124
            CDSs (without protein)            :: 124
            Pseudo Genes (ambiguous residues) :: 0 of 124
            Pseudo Genes (frameshifted)       :: 52 of 124
            Pseudo Genes (incomplete)         :: 71 of 124
            Pseudo Genes (internal stop)      :: 31 of 124
            Pseudo Genes (multiple problems)  :: 25 of 124
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP070458.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2113
                     /organism="Klebsiella quasipneumoniae"
                     /mol_type="genomic DNA"
                     /strain="B25110"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:1463165"
                     /plasmid="p4B25110"
                     /geo_loc_name="India: Vellore"
                     /lat_lon="12.9165 N 79.1325 E"
                     /collection_date="2014"
                     /collected_by="Christian Medical College"
     gene            complement(join(2020..2113,1..173))
                     /locus_tag="JT746_RS27180"
                     /old_locus_tag="JT746_27180"
     CDS             complement(join(2020..2113,1..173))
                     /locus_tag="JT746_RS27180"
                     /old_locus_tag="JT746_27180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001024536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001024536.1"
                     /translation="MNINIEYLNGNKTIGLFFLRSEAVIPDRFKNLILLIDGLSFGTFG
                     FHPHEGFEDELILYIQKTNERVKTLFVKIDLNGIKFGFLRTHS"
                     /name="hypothetical protein"
     gene            complement(177..1142)
                     /locus_tag="JT746_RS27185"
                     /old_locus_tag="JT746_27185"
     CDS             complement(177..1142)
                     /locus_tag="JT746_RS27185"
                     /old_locus_tag="JT746_27185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012421200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_001287824.1"
                     /translation="MSEDKFLSDYSPRDAVWDTQRTLTDSVGGIYQTAAEFERYALRMA
                     SCSGLLRFGWSTIMETGETRLRLRSAQFCRVRHCPVCQWRRTLMWQARFYQALPKIVVD
                     YPSSRWLFLTLTVRNCEIGELGTVLTAMNAAFKRMEKRKELSPVQGWIRATEVTRGKDG
                     SAHPHFHCLLMVQPSWFKGKNYVKHERWVELWRDCLRVNYEPNIDIRAVKTKTGEVVAN
                     VAEQLQSAVAETLKYSVKPEDMANDPEWFLELTRQLHKRRFISTGGALKNVLQLDRETN
                     EDLVIADDVGDGTDDGKRTAFVWDSGKRRYKRAPEKDKSD"
                     /name="protein rep"
     Typing          complement(518..749)
                     /name="Col(BS512)"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="2.05e-118"
ORIGIN
        1 aaaattaatt catcctcaaa accttcgtgc ggatgaaaac caaatgtgcc aaaacttaat
       61 ccatcaataa gcaaaataag gtttttaaac ctgtcaggaa tcaccgcttc acttcttaaa
      121 aaaaataaac caatagtctt atttccattc aggtattcaa tattaatatt catacgttaa
      181 tccgatttat ccttctcagg ggcgcgtttg taacgccgtt tacctgaatc ccagacaaac
      241 gccgtccgct tcccgtcatc agtgccatcc cctacatcgt cggcaatgac aagatcctca
      301 ttggtttctc gatccaactg gaggacgttt tttagcgccc caccggtcga gataaaacgg
      361 cgcttgtgaa gctgccgcgt cagctcaaga aaccactcag gatcgtttgc catatcttcc
      421 ggtttaacgg agtatttcag cgtttcagca accgcgcttt gcagttgctc ggcaacgttg
      481 gccacaacct cacctgtctt agtttttact gcccgaatat cgatattcgg ctcatagttc
      541 acccgcaagc aatcgcgcca gagttctacc caacgttcgt gcttaacgta gttcttccct
      601 ttaaaccaag aaggttgcac catcagcaga cagtgaaaat gcggatgtgc gctgccatcc
      661 ttacctcgcg tcacctccgt agccctgatc cacccctgaa caggtgatag ctcctttcgc
      721 ttttccattc gcttaaacgc cgcattcatt gctgtaagga ctgttccaag ttcacctatc
      781 tcgcagttcc tgacagttaa cgtcagaaac aaccatcggg aagacgggta atccacaacg
      841 attttcggta gagcctgata aaaacgggct tgccacatga gggttcttct ccactggcag
      901 acagggcaat gacggacacg gcaaaattgc gcactacgaa gccgtaggcg cgtttctccg
      961 gtttccatga tggtagacca accaaaacgt aacaaaccgc tacaggaggc catacggagt
     1021 gcatagcgct cgaattcagc agcagtctgg tagatacccc cgacagaatc ggtaagcgtg
     1081 cgctgggtat cccaaactgc atcacggggg ctgtagtccg aaaggaattt atcttctgac
     1141 attaagcctg ctccgatctg ggcaggctgt gatttgatgt ggtatattca tcacgtacct
     1201 gtgcattgcg agccagtaca tgtcaccaga gtttgccgct gaggtgacac attcgaaatg
     1261 ttggggagtg ttgacgcact ccccaacgcc gattaaaaac gcctcaattc tgctccattt
     1321 tctttgacct gtcaaaaccc actcaaagcc tcgtcattac tgggctaaac cactatttca
     1381 tatccgccat ttatccctta agtataaata caaggatcac gcgcgagaat tgcgcaaaaa
     1441 ataaccacaa ttttaacccc ccaaaacaag cacccccgaa cggcttaccc caaccttttc
     1501 cacacacccg atcaccaaaa cagggaataa aaacaaaacc ctgtcttaca ggtggatggc
     1561 ctcacttcgt gaaaccatcc accccgcata agttttttaa tcggtggtgt cgtcaatcac
     1621 taaatcggaa ccccaaaggg gacccccacg atttagcatt tgacgagatt aactctcgga
     1681 gatggcatca tgcttttaac ggactttaaa aaacggtgaa cggatgcgga ttttaatccg
     1741 tgtctgtgag gcgttgagca acgagcaaag cgaggcggta gaaagagagc cagcggcagg
     1801 ctcaggacga taatccgggg aaaatgtacc actcgcagag tgttaacatt tgacatcgga
     1861 ttgtctatcc tgcattggtg tcgagttggc aaggctgagg ataatgctga ggataatgct
     1921 gaggataatg ctgaggataa tgcaggatag acagagcact agagattgca tgcaatctcg
     1981 tacctatcac ctcagcctgc cgctggctct tttccagaac taagaatgcg ttcttaaaaa
     2041 tccaaacttg ataccgttta aatctatttt cacaaaaaga gtttttaccc tctcgtttgt
     2101 tttctgaata tat
//
