LOCUS       NZ_CP070444             2113 bp    DNA     circular CON 05-JAN-2024
DEFINITION  Klebsiella quasipneumoniae strain B9067 plasmid p4B9067, complete
            sequence.
ACCESSION   NZ_CP070444
VERSION     NZ_CP070444.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN17915067
            Assembly: GCF_016925335.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella quasipneumoniae
  ORGANISM  Klebsiella quasipneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 2113)
  AUTHORS   Veeraraghavan,B., Varghese,G.M. and Vijayakumar,S.
  TITLE     Multidrug resistant Klebsiella pneumoniae_B906_hybrid assembly
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2113)
  AUTHORS   Veeraraghavan,B., Varghese,G.M. and Vijayakumar,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-FEB-2021) Clinical Microbiology, Christian Medical
            College, Ida Scudder Road, Vellore 632004, India
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method :: Canu v. 1.8; Unicycler hybrid v. 0.4.7
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 135.0x
            Sequencing Technology             :: Illumina; Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/05/2024 08:01:11
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,460
            CDSs (total)                      :: 5,331
            Genes (coding)                    :: 5,207
            CDSs (with protein)               :: 5,207
            Genes (RNA)                       :: 129
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 88
            ncRNAs                            :: 16
            Pseudo Genes (total)              :: 124
            CDSs (without protein)            :: 124
            Pseudo Genes (ambiguous residues) :: 0 of 124
            Pseudo Genes (frameshifted)       :: 52 of 124
            Pseudo Genes (incomplete)         :: 71 of 124
            Pseudo Genes (internal stop)      :: 31 of 124
            Pseudo Genes (multiple problems)  :: 25 of 124
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP070444.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2113
                     /organism="Klebsiella quasipneumoniae"
                     /mol_type="genomic DNA"
                     /strain="B9067"
                     /isolation_source="blood"
                     /host="Homosapiens"
                     /db_xref="taxon:1463165"
                     /plasmid="p4B9067"
                     /geo_loc_name="India: Vellore"
                     /lat_lon="12.9165 N 79.1325 E"
                     /collection_date="2015"
                     /collected_by="Christian Medical College"
     gene            400..1365
                     /locus_tag="JT742_RS27175"
                     /old_locus_tag="JT742_27175"
     CDS             400..1365
                     /locus_tag="JT742_RS27175"
                     /old_locus_tag="JT742_27175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012421200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_001287824.1"
                     /translation="MSEDKFLSDYSPRDAVWDTQRTLTDSVGGIYQTAAEFERYALRMA
                     SCSGLLRFGWSTIMETGETRLRLRSAQFCRVRHCPVCQWRRTLMWQARFYQALPKIVVD
                     YPSSRWLFLTLTVRNCEIGELGTVLTAMNAAFKRMEKRKELSPVQGWIRATEVTRGKDG
                     SAHPHFHCLLMVQPSWFKGKNYVKHERWVELWRDCLRVNYEPNIDIRAVKTKTGEVVAN
                     VAEQLQSAVAETLKYSVKPEDMANDPEWFLELTRQLHKRRFISTGGALKNVLQLDRETN
                     EDLVIADDVGDGTDDGKRTAFVWDSGKRRYKRAPEKDKSD"
                     /name="protein rep"
     gene            1369..1635
                     /locus_tag="JT742_RS27180"
                     /old_locus_tag="JT742_27180"
     CDS             1369..1635
                     /locus_tag="JT742_RS27180"
                     /old_locus_tag="JT742_27180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001024536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001024536.1"
                     /translation="MNINIEYLNGNKTIGLFFLRSEAVIPDRFKNLILLIDGLSFGTFG
                     FHPHEGFEDELILYIQKTNERVKTLFVKIDLNGIKFGFLRTHS"
                     /name="hypothetical protein"
     Typing          794..1025
                     /name="Col(BS512)"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="2.05e-118"
ORIGIN
        1 gggttttgtt tttattccct gttttggtga tcgggtgtgt ggaaaaggtt ggggtaagcc
       61 gttcgggggt gcttgttttg gggggttaaa attgtggtta ttttttgcgc aattctcgcg
      121 cgtgatcctt gtatttatac ttaagggata aatggcggat atgaaatagt ggtttagccc
      181 agtaatgacg aggctttgag tgggttttga caggtcaaag aaaatggagc agaattgagg
      241 cgtttttaat cggcgttggg gagtgcgtca acactcccca acatttcgaa tgtgtcacct
      301 cagcggcaaa ctctggtgac atgtactggc tcgcaatgca caggtacgtg atgaatatac
      361 cacatcaaat cacagcctgc ccagatcgga gcaggcttaa tgtcagaaga taaattcctt
      421 tcggactaca gcccccgtga tgcagtttgg gatacccagc gcacgcttac cgattctgtc
      481 gggggtatct accagactgc tgctgaattc gagcgctatg cactccgtat ggcctcctgt
      541 agcggtttgt tacgttttgg ttggtctacc atcatggaaa ccggagaaac gcgcctacgg
      601 cttcgtagtg cgcaattttg ccgtgtccgt cattgccctg tctgccagtg gagaagaacc
      661 ctcatgtggc aagcccgttt ttatcaggct ctaccgaaaa tcgttgtgga ttacccgtct
      721 tcccgatggt tgtttctgac gttaactgtc aggaactgcg agataggtga acttggaaca
      781 gtccttacag caatgaatgc ggcgtttaag cgaatggaaa agcgaaagga gctatcacct
      841 gttcaggggt ggatcagggc tacggaggtg acgcgaggta aggatggcag cgcacatccg
      901 cattttcact gtctgctgat ggtgcaacct tcttggttta aagggaagaa ctacgttaag
      961 cacgaacgtt gggtagaact ctggcgcgat tgcttgcggg tgaactatga gccgaatatc
     1021 gatattcggg cagtaaaaac taagacaggt gaggttgtgg ccaacgttgc cgagcaactg
     1081 caaagcgcgg ttgctgaaac gctgaaatac tccgttaaac cggaagatat ggcaaacgat
     1141 cctgagtggt ttcttgagct gacgcggcag cttcacaagc gccgttttat ctcgaccggt
     1201 ggggcgctaa aaaacgtcct ccagttggat cgagaaacca atgaggatct tgtcattgcc
     1261 gacgatgtag gggatggcac tgatgacggg aagcggacgg cgtttgtctg ggattcaggt
     1321 aaacggcgtt acaaacgcgc ccctgagaag gataaatcgg attaacgtat gaatattaat
     1381 attgaatacc tgaatggaaa taagactatt ggtttatttt ttttaagaag tgaagcggtg
     1441 attcctgaca ggtttaaaaa ccttattttg cttattgatg gattaagttt tggcacattt
     1501 ggttttcatc cgcacgaagg ttttgaggat gaattaattt tatatattca gaaaacaaac
     1561 gagagggtaa aaactctttt tgtgaaaata gatttaaacg gtatcaagtt tggattttta
     1621 agaacgcatt cttagttctg gaaaagagcc agcggcaggc tgaggtgata ggtacgagat
     1681 tgcatgcaat ctctagtgct ctgtctatcc tgcattatcc tcagcattat cctcagcatt
     1741 atcctcagca ttatcctcag ccttgccaac tcgacaccaa tgcaggatag acaatccgat
     1801 gtcaaatgtt aacactctgc gagtggtaca ttttccccgg attatcgtcc tgagcctgcc
     1861 gctggctctc tttctaccgc ctcgctttgc tcgttgctca acgcctcaca gacacggatt
     1921 aaaatccgca tccgttcacc gttttttaaa gtccgttaaa agcatgatgc catctccgag
     1981 agttaatctc gtcaaatgct aaatcgtggg ggtccccttt ggggttccga tttagtgatt
     2041 gacgacacca ccgattaaaa aacttatgcg gggtggatgg tttcacgaag tgaggccatc
     2101 cacctgtaag aca
//
