LOCUS       NZ_CP070443             4991 bp    DNA     circular CON 05-JAN-2024
DEFINITION  Klebsiella quasipneumoniae strain B9067 plasmid p3B9067, complete
            sequence.
ACCESSION   NZ_CP070443
VERSION     NZ_CP070443.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN17915067
            Assembly: GCF_016925335.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella quasipneumoniae
  ORGANISM  Klebsiella quasipneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 4991)
  AUTHORS   Veeraraghavan,B., Varghese,G.M. and Vijayakumar,S.
  TITLE     Multidrug resistant Klebsiella pneumoniae_B906_hybrid assembly
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4991)
  AUTHORS   Veeraraghavan,B., Varghese,G.M. and Vijayakumar,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-FEB-2021) Clinical Microbiology, Christian Medical
            College, Ida Scudder Road, Vellore 632004, India
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method :: Canu v. 1.8; Unicycler hybrid v. 0.4.7
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 135.0x
            Sequencing Technology             :: Illumina; Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/05/2024 08:01:11
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,460
            CDSs (total)                      :: 5,331
            Genes (coding)                    :: 5,207
            CDSs (with protein)               :: 5,207
            Genes (RNA)                       :: 129
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 88
            ncRNAs                            :: 16
            Pseudo Genes (total)              :: 124
            CDSs (without protein)            :: 124
            Pseudo Genes (ambiguous residues) :: 0 of 124
            Pseudo Genes (frameshifted)       :: 52 of 124
            Pseudo Genes (incomplete)         :: 71 of 124
            Pseudo Genes (internal stop)      :: 31 of 124
            Pseudo Genes (multiple problems)  :: 25 of 124
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP070443.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4991
                     /organism="Klebsiella quasipneumoniae"
                     /mol_type="genomic DNA"
                     /strain="B9067"
                     /isolation_source="blood"
                     /host="Homosapiens"
                     /db_xref="taxon:1463165"
                     /plasmid="p3B9067"
                     /geo_loc_name="India: Vellore"
                     /lat_lon="12.9165 N 79.1325 E"
                     /collection_date="2015"
                     /collected_by="Christian Medical College"
     gene            300..704
                     /locus_tag="JT742_RS27145"
                     /old_locus_tag="JT742_27145"
     CDS             300..704
                     /locus_tag="JT742_RS27145"
                     /old_locus_tag="JT742_27145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016529521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2251 domain-containing protein"
                     /protein_id="WP_008321396.1"
                     /translation="MTILVTIQAQLVVGEEQVIKSLAPEGMLAAVFEDDGRTGYFYALD
                     ESVEGNPIMDAVHIYNAEDVSDGHIPSDVKIGWSEDSQKCVLLINGYPHGAFDFVGKNG
                     YCRSGYPPPINKVWSLSGHEWSDSVDDFFR"
                     /name="DUF2251 domain-containing protein"
     gene            complement(798..1229)
                     /locus_tag="JT742_RS27150"
                     /old_locus_tag="JT742_27150"
     CDS             complement(798..1229)
                     /locus_tag="JT742_RS27150"
                     /old_locus_tag="JT742_27150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001025244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6530 family protein"
                     /protein_id="WP_042109831.1"
                     /translation="MKIPAHLKHKPIIQVENYDRIDGPHADDTDAMGLSVGIAQWNTPG
                     WTELSAKVWRNTGEKWSRQSEELPLHRVIDLATLICITMDYSKNGRLSSSDDFPVTRST
                     DNPELAHHTEFMKKELKQNKSNLDVSLKRLSTELKRLGY"
                     /name="DUF6530 family protein"
     gene            1647..1904
                     /locus_tag="JT742_RS27155"
                     /old_locus_tag="JT742_27155"
     CDS             1647..1904
                     /locus_tag="JT742_RS27155"
                     /old_locus_tag="JT742_27155"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_042109830.1"
                     /translation="MGSNNNQNKDLQDKQADLLDQTYTLGWMDGYAEGYDDAIEDTQNA
                     LNKLENENELLTEVVESKDNVIKELASSAGRALQAVKKNK"
                     /name="hypothetical protein"
     gene            complement(1934..2992)
                     /locus_tag="JT742_RS27160"
                     /old_locus_tag="JT742_27160"
     CDS             complement(1934..2992)
                     /locus_tag="JT742_RS27160"
                     /old_locus_tag="JT742_27160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012508929.1"
                     /GO_function="GO:0005524 - ATP binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParA family protein"
                     /protein_id="WP_042109829.1"
                     /translation="MAIYAVWNNKGGVGKSYLTFQLASEYARQNPTKKVLVVDLCPQAN
                     SSSMLLGGMINGENTLNQIHSAIQRKTISGYIEDRIRSPYIPTNTGSSYVINVSTHNSK
                     VPNNLYLVTGDEQLELQASRVVGASFPGPHDAWRTVHLWINDLISDICNSWNNEDSCVF
                     IDCNPSFSIYTELALTAAERLLIPFSADGSSKRAVKAVLSLVYGERRHQNEPQSDFYLN
                     SNRYSMSLPQIYMYVGNRLTQMNNSSASAFKTVVTEIGDEIWKVWQTKPSLFCIHPNGS
                     STPNNKRSFRNMFQYEVNDANTASVVSGALGIPIATLTAGNKTVSGKIIKVNQTQLDKQ
                     VPNIVALAGMIE"
                     /name="ParA family protein"
     gene            complement(3322..3488)
                     /locus_tag="JT742_RS27515"
                     /pseudo=""
     CDS             complement(3322..3488)
                     /locus_tag="JT742_RS27515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001505258.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /name="replication initiation protein"
     gene            3904..4095
                     /locus_tag="JT742_RS27165"
                     /old_locus_tag="JT742_27165"
     CDS             3904..4095
                     /locus_tag="JT742_RS27165"
                     /old_locus_tag="JT742_27165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000166328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_032489493.1"
                     /translation="MTKQQKTALNMAKFIQHQSLLLLEKLNELDLDVEADLCEKLHDDA
                     EHLFRTLSSRLDALQDGN"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            4095..4496
                     /locus_tag="JT742_RS27170"
                     /old_locus_tag="JT742_27170"
     CDS             4095..4496
                     /locus_tag="JT742_RS27170"
                     /old_locus_tag="JT742_27170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009310048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_032489494.1"
                     /translation="MARVSISEAARLTGKSRTTLHRLIKAGDLSTCSGERNAKMVDTSE
                     LLRVFGPFEQLKGEHHSGQVSEQRDTASVDQCEQVIRHLKQEIEHLNTLLLSKDSHIDS
                     LKQAMLLLENHQAKLTESPAPWWKFWKKS"
                     /name="helix-turn-helix domain-containing protein"
     Typing          complement(3381..3783)
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="92.857"
                     /coverage="99.0"
                     /evalue="7.72e-165"
ORIGIN
        1 ataaattgcg tccccgttca ccgttttcgg atgggaagaa cgccggaaac aggacttacc
       61 ctgtctgaat ggcgtgaata ttcgcgctat gcacttgcgt gcatactcat gcatgccata
      121 aaaacagagc ctgcgcgttt ctggcgggtt ttcgggtggt ttgttgcctg ttttaccggt
      181 ttcccgtcag aaacgccctc agcgcgtttc tgacgatgct gataacggat gttatggtaa
      241 attatccgct tgtctgaaag ctggctgccg aagcaaccaa ggaaaggaga acagacctga
      301 tgaccatttt agtgacgata caggcccagc tcgttgtcgg ggaggaacag gttataaaga
      361 gcctcgctcc tgagggcatg ctggccgccg tgttcgaaga cgatggccgg accgggtatt
      421 tctatgcgct cgatgagtcc gtcgagggaa acccgattat ggacgcagta cacatctaca
      481 atgccgaaga cgtttcagac ggtcacattc cttctgatgt taaaattggc tggtcagaag
      541 acagtcagaa gtgcgtactc ctgatcaatg gatacccgca cggggcattc gatttcgtgg
      601 gaaaaaacgg gtactgcagg agtggttatc ctccccctat aaacaaggtg tggtctcttt
      661 ccgggcatga gtggagcgac tctgtggatg attttttccg gtgaattacg gcaggctata
      721 gcctgccatt atggttcgaa aaacggatgt tatggtaaat tcgtctgtga agtaggtaga
      781 catttctaaa gctagtttta atagccaagt ctcttcaatt cagtcgagag gcgtttgagg
      841 cttacatcaa gattgctttt attttgtttt aactcttttt tcataaactc agtgtgatgt
      901 gctagctcag ggttatcagt tgagcgagtc acgggaaaat catcactgga tgaaagtcgc
      961 ccatttttac tgtagtccat ggtgatacag atcagagttg caaggtcgat tacccggtga
     1021 agaggcagct cttctgattg tcttgaccat ttttctcctg tgtttcgcca aacctttgcc
     1081 gaaagctcag tccatccagg agtgttccat tgagcaatac ctacagatag ccccatagca
     1141 tcagtgtcat cggcatgtgg gccgtcaatg cggtcgtaat tttcgacttg aataattggt
     1201 ttatgcttca aatgcgcggg tattttcatc agttcgtcct taggtaatgt ttgtgattat
     1261 taaattacat tgtttttcta attataaaac tcactaaatg taagtaaata ttaatatcta
     1321 ttgttatcat gtgcttgtga ttttgttttt ccaattttat gttttttgct tggagagtag
     1381 cggtgttttt ttgtgtcaag tgttatgata agccgtacgt tttttttctg gtttatagtt
     1441 cggttattca cagcaatggg cgtggttttc tatgactaca gataacgtta ggaatattgg
     1501 cgactataaa aagaaagatg tcggggtgga tgctgactgt aatccagtct caggaaacac
     1561 accaccagtc agactaagtg agaaacttag aaatggaatt cctcctggtt tgaaaactca
     1621 gatgcgccaa caaatgagga aaaaacatgg gctctaacaa taatcagaat aaagatctgc
     1681 aggataagca agctgatctt ttggaccaaa cgtatactct tggttggatg gatggctatg
     1741 ccgaagggta tgatgatgct attgaagata ctcagaacgc tttgaataaa ctggaaaacg
     1801 aaaacgagtt gcttactgag gttgttgaaa gtaaagataa tgtaatcaaa gagttggcct
     1861 ctagtgctgg cagggcgctg caagcagtaa agaaaaacaa ataaaaaaag gcccttttaa
     1921 gggccttgct attttattcg atcataccag cgagagctac aatgttgggg acttgtttat
     1981 ctagctgcgt ctgattaacc tttattattt ttcctgaaac agttttattt cctgcagtta
     2041 atgtcgcgat tggaatacct aaggctccag atacgacaga tgctgtgttt gcatcattta
     2101 cttcatactg aaacatattc ctgaaagatc ttttattatt tggcgttgag ctcccatttg
     2161 ggtgaataca aaacagactt ggttttgttt gccatacttt ccaaatttca tcaccaattt
     2221 cggttactac cgtcttaaat gcactggcag atgaattgtt catttgcgtt aatctatttc
     2281 caacatacat atatatttgt ggtagcgaca tagaataacg attgctatta agatagaaat
     2341 ctgattgtgg ttcattctga tggcgacgct caccataaac taaagaaagt acagccttaa
     2401 ctgctctctt tgatgaacca tcggcagaga aaggaattaa aaggcgctct gctgcggtta
     2461 aagctaactc tgtataaata gagaagctag ggttgcagtc aatgaatacg cagctatctt
     2521 cattattcca tgagttgcaa atgtcactga ttaaatcatt aatccagagg tgaacagtac
     2581 gccatgcatc atggggacct ggaaatgatg ccccaacaac tcttgatgct tggagttcta
     2641 attgttcatc gccagtgaca agatatagat tatttggaac tttactattg tgtgtagata
     2701 catttattac atagctagaa ccagtgttgg taggaatata tggacttctg atcctatcct
     2761 caatatatcc agatattgtc tttctctgta ttgctgaatg aatctggttt agtgtgtttt
     2821 cgccatttat cattccacca agtaacatag aggacgagtt cgcttgtggg cacaggtcaa
     2881 ccaccaggac ctttttagta gggttctgtc tggcatattc agaggctaac tgaaaagtaa
     2941 ggtaactttt ccctacacca cccttgttat tccatacggc atagatcgcc atctataact
     3001 cctaatctag ttttgttgtt agcttagatt cagggtacta gagattattg ttctactgtt
     3061 agtttctttc agctgactgc ctttttttgg aacgatattc agtcgaaggg gttggctggc
     3121 tcaccatgac ttatctggag ttgtcgaatt ccgattaaaa ggatcttctt gagatcctaa
     3181 cctgcgggat gtaatctttt gctctgtaaa cgaaaaaacc acctggggag gtggtttttc
     3241 gaaggatcag taagttgggg aacttctgaa ccgtggtaac agggtgtaca agaccgctgc
     3301 caccaaatct gtcctttcag tttagctgta gttaggctgt aacttcaaga actctgcacc
     3361 agtaattctt gtacacccct taccagtggc tgctgccagt ggcgttttgt cgtgccttcc
     3421 gggttggact caagtcgaaa gttaccggaa caggcgcagc agtcggactg aacggggggt
     3481 tcgtgcatac agtccagctt ggagcgaact gcctacccgg aactgagtgt caggcgtgga
     3541 atgagacaaa cgcggccata acagcggaat gacaccggta aaccgaaagg caggaacagg
     3601 agagcgcacg agggagccat cagggggaaa cgcctgatat ctttatagtc ctgtcgggtt
     3661 tcgccaccac tgatttgagc gtccgtttct gtgatgcttg tcaggggggc ggagcctatg
     3721 gaaaaacggc cgctgtgcgg ccttcccttt tctaaattac gtgatcgctc ggttttctcg
     3781 agctttcata cgcatgctcc tgccgctcgc cgcagccgaa cggcaggagc gtagcgactg
     3841 agtgagcgag gaagcggaaa agagaacatc cctacactga gcactgacgc tctgaggcct
     3901 cttatgacga aacaacagaa aacagcgctg aacatggcta aattcatcca gcatcaatct
     3961 ctgctcctgc tggagaagct taacgagctt gatcttgatg tcgaggccga cctttgtgag
     4021 aaactccacg atgatgcgga gcatcttttc cgtacactgt cctcgagact ggatgcatta
     4081 caggatggta actgatggcc agagtgtcta ttagtgaggc agcccgactg acgggtaaga
     4141 gtagaacaac actgcacagg ttaattaaag caggtgacct gtccacctgt agcggtgagc
     4201 gcaatgcaaa aatggtagat acttcagagc ttttacgtgt ctttggtccc tttgaacaac
     4261 tgaagggtga acaccattct ggacaggtct ctgaacagcg cgatacagcc tctgttgacc
     4321 agtgtgaaca ggtgattcgt catctgaaac aggagattga acacctgaac actttacttt
     4381 tgtccaaaga ttcgcacatt gacagcctga aacaggccat gctccttctt gaaaatcacc
     4441 aggcaaaatt aactgaatcc ccggcgccat ggtggaaatt ctggaaaaaa tcctgaccct
     4501 gtcatgcttc agttttcctc tccggccatc ccggggagtt cctgaacctt cccaaaaata
     4561 gtcagatctc tgaacgctcc tcaccactaa aaatacccac accccacgca aaattaaaat
     4621 tttgcagatt tgtatttaat atcagtagtt tactttcctg agatttcgtt ttttaaattt
     4681 tatttatata gatccgactc tatgacgact cgtcatagag tccccggcga gtcgtcatag
     4741 agtcggtaac gactcagggc tataaaaaca atgagttaat aacgacccga ctctagaccc
     4801 gactccccgt ttggttgttt tttagtcgcg gcgactctag gtacgactct agtgcagagt
     4861 cgccggtgaa tcgtgtggtg agtcgtccgg cgacttgcca taacgtgatt gccggccgtc
     4921 gacgaacccg attcctgaac gtgctgaaaa ccggttttcc ggctgcgccg gcaacgcttc
     4981 acggccacgc a
//
