LOCUS       NZ_CP070424             2113 bp    DNA     circular CON 05-JAN-2024
DEFINITION  Klebsiella quasipneumoniae strain B2663 plasmid p4B2663, complete
            sequence.
ACCESSION   NZ_CP070424
VERSION     NZ_CP070424.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN17911902
            Assembly: GCF_016925255.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella quasipneumoniae
  ORGANISM  Klebsiella quasipneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 2113)
  AUTHORS   Veeraraghavan,B., Varghese,G.M. and Vijayakumar,S.
  TITLE     Multidrug resistant Klebsiella pneumoniae_B2663_hybrid assembly
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2113)
  AUTHORS   Veeraraghavan,B., Varghese,G.M. and Vijayakumar,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-FEB-2021) Clinical Microbiology, Christian Medical
            College, Ida Scudder Road, Vellore 632004, India
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method :: Canu v. 1.8; Unicycler hybrid v. 0.4.7
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 101.0x
            Sequencing Technology             :: Illumina; Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/05/2024 08:03:53
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,462
            CDSs (total)                      :: 5,334
            Genes (coding)                    :: 5,210
            CDSs (with protein)               :: 5,210
            Genes (RNA)                       :: 128
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 88
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 124
            CDSs (without protein)            :: 124
            Pseudo Genes (ambiguous residues) :: 0 of 124
            Pseudo Genes (frameshifted)       :: 53 of 124
            Pseudo Genes (incomplete)         :: 70 of 124
            Pseudo Genes (internal stop)      :: 31 of 124
            Pseudo Genes (multiple problems)  :: 25 of 124
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP070424.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2113
                     /organism="Klebsiella quasipneumoniae"
                     /mol_type="genomic DNA"
                     /strain="B2663"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:1463165"
                     /plasmid="p4B2663"
                     /geo_loc_name="India: Vellore"
                     /lat_lon="12.9165 N 79.1325 E"
                     /collection_date="2015"
                     /collected_by="Christian Medical College"
     gene            506..1471
                     /locus_tag="JT726_RS27185"
                     /old_locus_tag="JT726_27185"
     CDS             506..1471
                     /locus_tag="JT726_RS27185"
                     /old_locus_tag="JT726_27185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012421200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_001287824.1"
                     /translation="MSEDKFLSDYSPRDAVWDTQRTLTDSVGGIYQTAAEFERYALRMA
                     SCSGLLRFGWSTIMETGETRLRLRSAQFCRVRHCPVCQWRRTLMWQARFYQALPKIVVD
                     YPSSRWLFLTLTVRNCEIGELGTVLTAMNAAFKRMEKRKELSPVQGWIRATEVTRGKDG
                     SAHPHFHCLLMVQPSWFKGKNYVKHERWVELWRDCLRVNYEPNIDIRAVKTKTGEVVAN
                     VAEQLQSAVAETLKYSVKPEDMANDPEWFLELTRQLHKRRFISTGGALKNVLQLDRETN
                     EDLVIADDVGDGTDDGKRTAFVWDSGKRRYKRAPEKDKSD"
                     /name="protein rep"
     gene            1475..1741
                     /locus_tag="JT726_RS27190"
                     /old_locus_tag="JT726_27190"
     CDS             1475..1741
                     /locus_tag="JT726_RS27190"
                     /old_locus_tag="JT726_27190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001024536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001024536.1"
                     /translation="MNINIEYLNGNKTIGLFFLRSEAVIPDRFKNLILLIDGLSFGTFG
                     FHPHEGFEDELILYIQKTNERVKTLFVKIDLNGIKFGFLRTHS"
                     /name="hypothetical protein"
     Typing          900..1131
                     /name="Col(BS512)"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="2.05e-118"
ORIGIN
        1 gggggtcccc tttggggttc cgatttagtg attgacgaca ccaccgatta aaaaacttat
       61 gcggggtgga tggtttcacg aagtgaggcc atccacctgt aagacagggt tttgttttta
      121 ttccctgttt tggtgatcgg gtgtgtggaa aaggttgggg taagccgttc gggggtgctt
      181 gttttggggg gttaaaattg tggttatttt ttgcgcaatt ctcgcgcgtg atccttgtat
      241 ttatacttaa gggataaatg gcggatatga aatagtggtt tagcccagta atgacgaggc
      301 tttgagtggg ttttgacagg tcaaagaaaa tggagcagaa ttgaggcgtt tttaatcggc
      361 gttggggagt gcgtcaacac tccccaacat ttcgaatgtg tcacctcagc ggcaaactct
      421 ggtgacatgt actggctcgc aatgcacagg tacgtgatga atataccaca tcaaatcaca
      481 gcctgcccag atcggagcag gcttaatgtc agaagataaa ttcctttcgg actacagccc
      541 ccgtgatgca gtttgggata cccagcgcac gcttaccgat tctgtcgggg gtatctacca
      601 gactgctgct gaattcgagc gctatgcact ccgtatggcc tcctgtagcg gtttgttacg
      661 ttttggttgg tctaccatca tggaaaccgg agaaacgcgc ctacggcttc gtagtgcgca
      721 attttgccgt gtccgtcatt gccctgtctg ccagtggaga agaaccctca tgtggcaagc
      781 ccgtttttat caggctctac cgaaaatcgt tgtggattac ccgtcttccc gatggttgtt
      841 tctgacgtta actgtcagga actgcgagat aggtgaactt ggaacagtcc ttacagcaat
      901 gaatgcggcg tttaagcgaa tggaaaagcg aaaggagcta tcacctgttc aggggtggat
      961 cagggctacg gaggtgacgc gaggtaagga tggcagcgca catccgcatt ttcactgtct
     1021 gctgatggtg caaccttctt ggtttaaagg gaagaactac gttaagcacg aacgttgggt
     1081 agaactctgg cgcgattgct tgcgggtgaa ctatgagccg aatatcgata ttcgggcagt
     1141 aaaaactaag acaggtgagg ttgtggccaa cgttgccgag caactgcaaa gcgcggttgc
     1201 tgaaacgctg aaatactccg ttaaaccgga agatatggca aacgatcctg agtggtttct
     1261 tgagctgacg cggcagcttc acaagcgccg ttttatctcg accggtgggg cgctaaaaaa
     1321 cgtcctccag ttggatcgag aaaccaatga ggatcttgtc attgccgacg atgtagggga
     1381 tggcactgat gacgggaagc ggacggcgtt tgtctgggat tcaggtaaac ggcgttacaa
     1441 acgcgcccct gagaaggata aatcggatta acgtatgaat attaatattg aatacctgaa
     1501 tggaaataag actattggtt tatttttttt aagaagtgaa gcggtgattc ctgacaggtt
     1561 taaaaacctt attttgctta ttgatggatt aagttttggc acatttggtt ttcatccgca
     1621 cgaaggtttt gaggatgaat taattttata tattcagaaa acaaacgaga gggtaaaaac
     1681 tctttttgtg aaaatagatt taaacggtat caagtttgga tttttaagaa cgcattctta
     1741 gttctggaaa agagccagcg gcaggctgag gtgataggta cgagattgca tgcaatctct
     1801 agtgctctgt ctatcctgca ttatcctcag cattatcctc agcattatcc tcagcattat
     1861 cctcagcctt gccaactcga caccaatgca ggatagacaa tccgatgtca aatgttaaca
     1921 ctctgcgagt ggtacatttt ccccggatta tcgtcctgag cctgccgctg gctctctttc
     1981 taccgcctcg ctttgctcgt tgctcaacgc ctcacagaca cggattaaaa tccgcatccg
     2041 ttcaccgttt tttaaagtcc gttaaaagca tgatgccatc tccgagagtt aatctcgtca
     2101 aatgctaaat cgt
//
