LOCUS       NZ_CP070363             1967 bp    DNA     circular CON 10-FEB-2024
DEFINITION  Acinetobacter baumannii strain AB5075-VUB plasmid pAB5075-VUB_1,
            complete sequence.
ACCESSION   NZ_CP070363
VERSION     NZ_CP070363.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN17898087
            Assembly: GCF_016919505.2
KEYWORDS    RefSeq.
SOURCE      Acinetobacter baumannii
  ORGANISM  Acinetobacter baumannii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales;
            Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii
            complex.
REFERENCE   1  (bases 1 to 1967)
  AUTHORS   Whiteway,C., Philippe,C., Mateus,Y., Breine,A. and Van der Henst,C.
  TITLE     A novel phenotypic switch controls the virulence and resistances of
            Acinetobacter baumannii
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1967)
  AUTHORS   Whiteway,C., Philippe,C., Mateus,Y., Breine,A., Valcek,A. and Van
            der Henst,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-FEB-2021) Center for Structural Biology, Vrije
            Universiteit Brussel, Pleinlaan 2, Brussels 1050, Belgium
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Flye v. 2.8.2
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 400x
            Sequencing Technology :: Oxford Nanopore MinION; Illumina
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 02/10/2024 02:44:33
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,013
            CDSs (total)                      :: 3,917
            Genes (coding)                    :: 3,828
            CDSs (with protein)               :: 3,828
            Genes (RNA)                       :: 96
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 74
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 89
            CDSs (without protein)            :: 89
            Pseudo Genes (ambiguous residues) :: 0 of 89
            Pseudo Genes (frameshifted)       :: 54 of 89
            Pseudo Genes (incomplete)         :: 33 of 89
            Pseudo Genes (internal stop)      :: 17 of 89
            Pseudo Genes (multiple problems)  :: 13 of 89
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP070363.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1967
                     /organism="Acinetobacter baumannii"
                     /mol_type="genomic DNA"
                     /strain="AB5075-VUB"
                     /host="Homo sapiens"
                     /db_xref="taxon:470"
                     /plasmid="pAB5075-VUB_1"
                     /geo_loc_name="Belgium"
                     /collection_date="2008"
                     /note="derived from AB5075"
     gene            complement(join(1949..1967,1..1163))
                     /locus_tag="JWB56_RS19525"
                     /old_locus_tag="JWB56_19265"
     CDS             complement(join(1949..1967,1..1163))
                     /locus_tag="JWB56_RS19525"
                     /old_locus_tag="JWB56_19265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000271233.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /GO_process="GO:0006260 - DNA replication [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_000271233.1"
                     /translation="MYANTQNTQATAERGVPRTHIAPSVDGGSLGIYTDNSANRTTQGF
                     QPIREKFKLLHFARKLLPKERTAHCFYNRITKEEGVSVFLNKLRNKANYGNVMRCANPW
                     ACPVCSAIISEGRKDEVKTAMDWWKAQGGDVLLLTLTAPHYSTTDIKSLKPAMLKARKY
                     MLKGVRATKDLFKHYAIEHYISVFEVTHGKNGFHPHFHILLFTKYHVHNPRGSVMRMQF
                     FEQWKKACEKAGLDQPSYEHGLDLRNGQKAASYVSKWGLEHEMTKGHIKKGKTDSKTPF
                     DLLRDYAEGDENAGKLFRIYFDAFKGTRQLNWSKGLKKLSSKGQEEKTDQELVDETDNV
                     AELMFKLSIELWNPIRKHGRQGELLIKVQEDHTLKKAMEYVKECLGYDGQLRE"
                     /name="protein rep"
     gene            complement(1238..1489)
                     /locus_tag="JWB56_RS19530"
                     /old_locus_tag="JWB56_19270"
     CDS             complement(1238..1489)
                     /locus_tag="JWB56_RS19530"
                     /old_locus_tag="JWB56_19270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000290587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000290587.1"
                     /translation="MAVQKRLALTIQPDYLDLLKKVADYQNIPVSTMVMGLLDAQRPVV
                     EAMLKAFQDIEAGKDKQKILSELLASGLEAAAQEIRKD"
                     /name="hypothetical protein"
ORIGIN
        1 tcatagccta agcactcttt gacatattcc attgcctttt taagtgtgtg atcttcttgc
       61 accttaatca gcaattcgcc ttgtctgccg tgtttccgta ttggattcca tagttctata
      121 gataatttga acatcagctc cgcaacattg tccgtttcat caactaattc ttgatctgtt
      181 ttttcttctt gccctttgct ggagagtttt ttcaaacctt ttgaccaatt taattggcgt
      241 gtacctttga aagcatcaaa gtaaatccta aataattttc ctgcattttc gtcaccctct
      301 gcataatcac ggagtaaatc gaaaggcgtt ttagaatctg ttttaccttt tttaatatgt
      361 ccttttgtca tttcatgttc caaaccccat tttgaaacat agcttgctgc cttttgacca
      421 ttgcggagat ccaaaccgtg ttcatagctt ggttggtcta atcctgcttt ttcacatgcc
      481 tttttccatt gttcaaagaa ttgcatacgc atcacagaac cacgtggatt gtgtacgtga
      541 tacttagtga ataacagaat atggaagtgt ggatggaatc cattttttcc gtgtgtcact
      601 tcaaatacag aaatgtaatg ttcaatggca tagtgtttga aaaggtcttt agtcgcccga
      661 acacccttga gcatatattt tcgagcttta agcattgcag gctttaaaga tttaatatca
      721 gtagtcgaat agtggggagc tgttagagta agaagtaata catcaccgcc ttgagctttc
      781 caccagtcca tagccgtttt tacttcatct tttcgacctt ctgaaataat tgcagaacaa
      841 acaggacaag cccagggatt agcacagcgc atcacattcc cataattggc tttattccgt
      901 aatttattca aaaaaacaga tacaccctct tcttttgtaa tccgattata gaaacagtga
      961 gcagtacgtt ctttagggag taattttcga gcaaaatgca gtaatttaaa cttttctcgt
     1021 atgggctgaa agccttgtgt agtgcggttg gcggagttat ccgtatatat accaagggag
     1081 ccgccatcaa ctgacggagc gatgtgcgtt cgcggaacgc cacgctccgc agttgcttgc
     1141 gtattttgag tattagcgta caatttagtt acctcgtagt attagcgtac aacaggattc
     1201 gaagccctaa gaactgccat tcttggggct ttactattta atcctttcta atttcttgag
     1261 ctgctgcttc aagacccgat gctaaaagtt cagataagat tttttgttta tcttttcctg
     1321 cctcaatatc ctgaaatgct ttaagcattg cctcaactac agggcgttga gcgtctaata
     1381 agcccataac cattgttgat acagggatat tttgataatc cgctactttc ttcaataaat
     1441 ccaaatagtc gggctgaatt gtgagggcta atcgtttttg aactgccatt ctaaaaacct
     1501 tatgttacta atagtcacat aatacatcta ttcaaaaaat aagcaaatgt tttgcagtcg
     1561 gcatagccga aaaactcccg atcttggttt agatgggagc gttgtaatca gggagagaag
     1621 gtttttagtt tttattgcgg agtcgtcact cgtagacact cgttcggtac ttgtaaacat
     1681 gacaacatga caacatgtaa gcaaggatac acatagtacc ctgtgacctt gttagggaca
     1741 ccctaagacc cctttaattt cgctctcaaa ctttctaaat atttttttgc tgtttctcta
     1801 tgttttaagt actcgacctt atttttaaga cagtcaccac aaacaccacg aacaagatta
     1861 tctctattct tgatatgaac catttcagtg ttttttgtag acatcacccg atcacagtcg
     1921 gtacatagaa aaaaacccca atacataatt attccctcag ttgtcca
//
