LOCUS       NZ_CP070359             1967 bp    DNA     circular CON 21-APR-2024
DEFINITION  Acinetobacter baumannii strain AB5075-VUB-itrA::ISAba13 plasmid
            pAB5075-VUB-itrA_1, complete sequence.
ACCESSION   NZ_CP070359
VERSION     NZ_CP070359.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN17898088
            Assembly: GCF_016919525.1
KEYWORDS    RefSeq.
SOURCE      Acinetobacter baumannii
  ORGANISM  Acinetobacter baumannii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales;
            Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii
            complex.
REFERENCE   1  (bases 1 to 1967)
  AUTHORS   Whiteway,C., Philippe,C., Mateus,Y., Breine,A. and Van der Henst,C.
  TITLE     A novel phenotypic switch controls the virulence and resistances of
            Acinetobacter baumannii
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1967)
  AUTHORS   Whiteway,C., Philippe,C., Mateus,Y., Breine,A., Valcek,A. and Van
            der Henst,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-FEB-2021) Center for Structural Biology, Vrije
            Universiteit Brussel, Pleinlaan 2, Brussels 1050, Belgium
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Flye v. 2.8.2
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 400x
            Sequencing Technology :: Oxford Nanopore MinION; Illumina
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_016919525.1-RS_2024_04_21
            Annotation Date                   :: 04/21/2024 04:55:09
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,043
            CDSs (total)                      :: 3,947
            Genes (coding)                    :: 3,846
            CDSs (with protein)               :: 3,846
            Genes (RNA)                       :: 96
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 74
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 101
            CDSs (without protein)            :: 101
            Pseudo Genes (ambiguous residues) :: 0 of 101
            Pseudo Genes (frameshifted)       :: 65 of 101
            Pseudo Genes (incomplete)         :: 35 of 101
            Pseudo Genes (internal stop)      :: 17 of 101
            Pseudo Genes (multiple problems)  :: 14 of 101
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP070359.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1967
                     /organism="Acinetobacter baumannii"
                     /mol_type="genomic DNA"
                     /strain="AB5075-VUB-itrA::ISAba13"
                     /host="Homo sapiens"
                     /db_xref="taxon:470"
                     /plasmid="pAB5075-VUB-itrA_1"
                     /geo_loc_name="Belgium"
                     /collection_date="2008"
                     /note="derived from AB5075"
     gene            join(1558..1967,1..772)
                     /locus_tag="JWB57_RS19645"
                     /old_locus_tag="JWB57_19350"
     CDS             join(1558..1967,1..772)
                     /locus_tag="JWB57_RS19645"
                     /old_locus_tag="JWB57_19350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000271233.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /GO_process="GO:0006260 - DNA replication [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_000271233.1"
                     /translation="MYANTQNTQATAERGVPRTHIAPSVDGGSLGIYTDNSANRTTQGF
                     QPIREKFKLLHFARKLLPKERTAHCFYNRITKEEGVSVFLNKLRNKANYGNVMRCANPW
                     ACPVCSAIISEGRKDEVKTAMDWWKAQGGDVLLLTLTAPHYSTTDIKSLKPAMLKARKY
                     MLKGVRATKDLFKHYAIEHYISVFEVTHGKNGFHPHFHILLFTKYHVHNPRGSVMRMQF
                     FEQWKKACEKAGLDQPSYEHGLDLRNGQKAASYVSKWGLEHEMTKGHIKKGKTDSKTPF
                     DLLRDYAEGDENAGKLFRIYFDAFKGTRQLNWSKGLKKLSSKGQEEKTDQELVDETDNV
                     AELMFKLSIELWNPIRKHGRQGELLIKVQEDHTLKKAMEYVKECLGYDGQLRE"
                     /name="protein rep"
     gene            1232..1483
                     /locus_tag="JWB57_RS19650"
                     /old_locus_tag="JWB57_19355"
     CDS             1232..1483
                     /locus_tag="JWB57_RS19650"
                     /old_locus_tag="JWB57_19355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000290587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000290587.1"
                     /translation="MAVQKRLALTIQPDYLDLLKKVADYQNIPVSTMVMGLLDAQRPVV
                     EAMLKAFQDIEAGKDKQKILSELLASGLEAAAQEIRKD"
                     /name="hypothetical protein"
ORIGIN
        1 tcttactcta acagctcccc actattcgac tactgatatt aaatctttaa agcctgcaat
       61 gcttaaagct cgaaaatata tgctcaaggg tgttcgggcg actaaagacc ttttcaaaca
      121 ctatgccatt gaacattaca tttctgtatt tgaagtgaca cacggaaaaa atggattcca
      181 tccacacttc catattctgt tattcactaa gtatcacgta cacaatccac gtggttctgt
      241 gatgcgtatg caattctttg aacaatggaa aaaggcatgt gaaaaagcag gattagacca
      301 accaagctat gaacacggtt tggatctccg caatggtcaa aaggcagcaa gctatgtttc
      361 aaaatggggt ttggaacatg aaatgacaaa aggacatatt aaaaaaggta aaacagattc
      421 taaaacgcct ttcgatttac tccgtgatta tgcagagggt gacgaaaatg caggaaaatt
      481 atttaggatt tactttgatg ctttcaaagg tacacgccaa ttaaattggt caaaaggttt
      541 gaaaaaactc tccagcaaag ggcaagaaga aaaaacagat caagaattag ttgatgaaac
      601 ggacaatgtt gcggagctga tgttcaaatt atctatagaa ctatggaatc caatacggaa
      661 acacggcaga caaggcgaat tgctgattaa ggtgcaagaa gatcacacac ttaaaaaggc
      721 aatggaatat gtcaaagagt gcttaggcta tgatggacaa ctgagggaat aattatgtat
      781 tggggttttt ttctatgtac cgactgtgat cgggtgatgt ctacaaaaaa cactgaaatg
      841 gttcatatca agaatagaga taatcttgtt cgtggtgttt gtggtgactg tcttaaaaat
      901 aaggtcgagt acttaaaaca tagagaaaca gcaaaaaaat atttagaaag tttgagagcg
      961 aaattaaagg ggtcttaggg tgtccctaac aaggtcacag ggtactatgt gtatccttgc
     1021 ttacatgttg tcatgttgtc atgtttacaa gtaccgaacg agtgtctacg agtgacgact
     1081 ccgcaataaa aactaaaaac cttctctccc tgattacaac gctcccatct aaaccaagat
     1141 cgggagtttt tcggctatgc cgactgcaaa acatttgctt attttttgaa tagatgtatt
     1201 atgtgactat tagtaacata aggtttttag aatggcagtt caaaaacgat tagccctcac
     1261 aattcagccc gactatttgg atttattgaa gaaagtagcg gattatcaaa atatccctgt
     1321 atcaacaatg gttatgggct tattagacgc tcaacgccct gtagttgagg caatgcttaa
     1381 agcatttcag gatattgagg caggaaaaga taaacaaaaa atcttatctg aacttttagc
     1441 atcgggtctt gaagcagcag ctcaagaaat tagaaaggat taaatagtaa agccccaaga
     1501 atggcagttc ttagggcttc gaatcctgtt gtacgctaat actacgaggt aactaaattg
     1561 tacgctaata ctcaaaatac gcaagcaact gcggagcgtg gcgttccgcg aacgcacatc
     1621 gctccgtcag ttgatggcgg ctcccttggt atatatacgg ataactccgc caaccgcact
     1681 acacaaggct ttcagcccat acgagaaaag tttaaattac tgcattttgc tcgaaaatta
     1741 ctccctaaag aacgtactgc tcactgtttc tataatcgga ttacaaaaga agagggtgta
     1801 tctgtttttt tgaataaatt acggaataaa gccaattatg ggaatgtgat gcgctgtgct
     1861 aatccctggg cttgtcctgt ttgttctgca attatttcag aaggtcgaaa agatgaagta
     1921 aaaacggcta tggactggtg gaaagctcaa ggcggtgatg tattact
//
