LOCUS       NZ_CP070182             1506 bp    DNA     circular CON 11-JAN-2024
DEFINITION  Klebsiella pneumoniae strain FDAARGOS_1330 plasmid unnamed13,
            complete sequence.
ACCESSION   NZ_CP070182
VERSION     NZ_CP070182.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16357472
            Assembly: GCF_016903515.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 1506)
  AUTHORS   Sokurenko,E., Tallon,L., Sadzewicz,L., Zhao,X., Boylan,J., Ott,S.,
            Bowen,H., Vavikolanu,K., Mehta,A., Aluvathingal,J., Nadendla,S.,
            Yan,Y. and Sichtig,H.
  TITLE     FDA dAtabase for Regulatory Grade micrObial Sequences (FDA-ARGOS):
            Supporting development and validation of Infectious Disease Dx tests
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1506)
  AUTHORS   Sokurenko,E., Tallon,L., Sadzewicz,L., Zhao,X., Boylan,J., Ott,S.,
            Bowen,H., Vavikolanu,K., Mehta,A., Aluvathingal,J., Nadendla,S.,
            Yan,Y. and Sichtig,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-FEB-2021) Institute for Genome Sciences, University of
            Maryland School of Medicine, BioPark II, 801 W. Baltimore St., Suite
            619, Baltimore, MD 21201, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: SMRT v. 8.0.0, HGAP v. 4
            Genome Coverage                   :: 635.94x
            Sequencing Technology             :: Pacbio; Illumina
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/11/2024 06:11:10
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,373
            CDSs (total)                      :: 5,245
            Genes (coding)                    :: 5,139
            CDSs (with protein)               :: 5,139
            Genes (RNA)                       :: 128
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 88
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 107
            CDSs (without protein)            :: 106
            Pseudo Genes (ambiguous residues) :: 0 of 107
            Pseudo Genes (frameshifted)       :: 42 of 107
            Pseudo Genes (incomplete)         :: 56 of 107
            Pseudo Genes (internal stop)      :: 20 of 107
            Pseudo Genes (multiple problems)  :: 11 of 107
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP070182.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1506
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="FDAARGOS_1330"
                     /host="Homo sapiens"
                     /culture_collection="FDA:FDAARGOS_1330"
                     /db_xref="taxon:573"
                     /plasmid="unnamed13"
                     /geo_loc_name="USA: WA"
                     /collected_by="ARMADA"
     gene            complement(113..553)
                     /locus_tag="I6K60_RS26385"
                     /old_locus_tag="I6K60_26385"
     CDS             complement(113..553)
                     /locus_tag="I6K60_RS26385"
                     /old_locus_tag="I6K60_26385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000031238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000031238.1"
                     /translation="MSKDVERITQINDQGEIIGGFVAVIRPKQKSAFQRHFTMNQDALR
                     ILAKELTGEQFKVLMLMLADLDYENFIQIAQADIAETLGMQKTNVSRAVRALLDVGVIF
                     EGPKVGRSKTYRLNEQFGWKGTVTNHKKALKNGFSVIQGGRI"
                     /name="hypothetical protein"
     Typing          1078..1334
                     /name="Col(MG828)"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="94.186"
                     /coverage="98.0"
                     /evalue="3.06e-107"
ORIGIN
        1 gccctatcct gcatcgcatc gaactgacat gcggcaaaag agcaatgcag gatagacaat
       61 catggtcaaa acgttaacac gtagccctga ttgtccgcct gccgctggct ctttaaatcc
      121 ggccgccctg aatgacacta aagccgtttt tgagtgcctt tttgtggttg gttacggtgc
      181 ctttccaacc aaattgttca ttcagccggt atgtttttga tctgccaact ttaggtccct
      241 caaagatcac cccaacatcc agtagcgcgc gaacggcgcg actaacattc gttttctgca
      301 tccctaaagt ttcagcaata tctgcttggg cgatctgaat gaagttttcg taatccagat
      361 ctgcaagcat cagcattaag accttgaatt gctccccggt taattcctta gccaagatcc
      421 gtaatgcgtc ttgattcatg gtgaaatgcc tctgaaatgc tgatttttgt ttagggcgga
      481 taacggcaac gaagccgccg ataatctcac cctggtcatt tatctgagtg attctctcga
      541 catccttact catctttgaa ccctatttga gttatcaata atgataacag tgttatcatt
      601 attgataact atgtcaactg taacccttag attttgttaa tgtttttatt ctcctttctg
      661 tatctttata ttaggcgtct aacgcattga ttccattaga tatttatcct agctactctt
      721 tggggtgtcg gggcgaagcc ctgacccagt cacgtaacga tagcggagtg tatactggct
      781 taatcctctg caagcctcgt cagccgtgat ttttgccaga tttcgaggtt ttcacgttca
      841 acagctcctg cacgtttttt gccgtccgtt caccgttaaa ctccgcagaa atcgggacag
      901 gatgtgcaaa tgtaataccg tcacccgcga cgatattccg tttgccatct ggtcagggct
      961 tcaccccgac accccgcatc agtgcgtacg tgctcaatgt ggtttccggt tctcttccgc
     1021 ttcctcgccc actcgctcac taacgttcgg tcgctggggc tgcggcgagc ggtgccacct
     1081 ctcgcatgtt atcggtgatt ccgctgttgt tctttcgggg atgagtcgcc agatagctct
     1141 tcaaacgctc tcagaagctc tcaggcgcac gaaacgggtt ttaaatgccc gtcagggcat
     1201 ggaaggcgcg aaaaacgctt acagagggtt tcaggaggtc aggcgcgccg atacccctaa
     1261 ccaggggctt tcaggtcgcc aggaaccgcg tcagccccct gcaaagccca tttgcacggc
     1321 actggcagct attcagctgg ttggtggtcg tagaccgtcg atgttacagc gatgggggtc
     1381 tggggttctc cccagacggt ttccggttgc gctcaaggcg ctgccggaac cgtggcagct
     1441 cagacgtttt ggagattatc gggcaaaggt tgcgaatgac gtcaatgacg tcattttgcg
     1501 gcgttt
//
