LOCUS       NZ_CP070147             1278 bp    DNA     linear   CON 05-JAN-2024
DEFINITION  Klebsiella oxytoca strain FDAARGOS_1331 plasmid unnamed3.
ACCESSION   NZ_CP070147
VERSION     NZ_CP070147.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16357473
            Assembly: GCF_016904515.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella oxytoca
  ORGANISM  Klebsiella oxytoca
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 1278)
  AUTHORS   Sokurenko,E., Tallon,L., Sadzewicz,L., Zhao,X., Boylan,J., Ott,S.,
            Bowen,H., Vavikolanu,K., Mehta,A., Aluvathingal,J., Nadendla,S.,
            Yan,Y. and Sichtig,H.
  TITLE     FDA dAtabase for Regulatory Grade micrObial Sequences (FDA-ARGOS):
            Supporting development and validation of Infectious Disease Dx tests
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1278)
  AUTHORS   Sokurenko,E., Tallon,L., Sadzewicz,L., Zhao,X., Boylan,J., Ott,S.,
            Bowen,H., Vavikolanu,K., Mehta,A., Aluvathingal,J., Nadendla,S.,
            Yan,Y. and Sichtig,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-FEB-2021) Institute for Genome Sciences, University of
            Maryland School of Medicine, BioPark II, 801 W. Baltimore St., Suite
            619, Baltimore, MD 21201, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: SMRT v. 8.0.0, HGAP v. 4
            Genome Coverage                   :: 904.14x
            Sequencing Technology             :: Pacbio; Illumina
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/05/2024 07:44:36
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,691
            CDSs (total)                      :: 5,575
            Genes (coding)                    :: 5,481
            CDSs (with protein)               :: 5,481
            Genes (RNA)                       :: 116
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 85
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 94
            CDSs (without protein)            :: 94
            Pseudo Genes (ambiguous residues) :: 0 of 94
            Pseudo Genes (frameshifted)       :: 37 of 94
            Pseudo Genes (incomplete)         :: 55 of 94
            Pseudo Genes (internal stop)      :: 23 of 94
            Pseudo Genes (multiple problems)  :: 18 of 94
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP070147.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..1278
                     /organism="Klebsiella oxytoca"
                     /mol_type="genomic DNA"
                     /strain="FDAARGOS_1331"
                     /host="Homo sapiens"
                     /culture_collection="FDA:FDAARGOS_1331"
                     /db_xref="taxon:571"
                     /plasmid="unnamed3"
                     /geo_loc_name="USA: WA"
                     /collected_by="ARMADA"
     gene            41..574
                     /locus_tag="I6K61_RS28315"
                     /old_locus_tag="I6K61_28320"
     CDS             41..574
                     /locus_tag="I6K61_RS28315"
                     /old_locus_tag="I6K61_28320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005221103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000168770.1"
                     /translation="MASTEEKLLTLLLSVEHLQHTAMEQQKAVADSLAVARETLRGYRD
                     ISDGVAKQVRDEVRNEVQKLDVAGLIGERISQDFQRLEESVANMKANADALNRDIATIH
                     SNIVQEYNTLKGYSWKWLGGVSVAFLVMFCVLGWGMKTILDRNYNATAAVYQKVVTLED
                     KLVEKPVTGKSRKN"
                     /name="hypothetical protein"
     gene            complement(640..849)
                     /locus_tag="I6K61_RS28320"
                     /old_locus_tag="I6K61_28325"
     CDS             complement(640..849)
                     /locus_tag="I6K61_RS28320"
                     /old_locus_tag="I6K61_28325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001618649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001096196.1"
                     /translation="MAKLGENTPHIIDATVDFMASSQAFREYLKKLPPDNTIPPALTDE
                     HVPLYIRRLEYYRLLYRPKQTESY"
                     /name="hypothetical protein"
ORIGIN
        1 ttaaatcacc gtcacgtgga ttttctatgg gattctgaac atggccagca cagaagaaaa
       61 attacttacg ctcctgttat cggtggagca tctgcaacat accgcaatgg agcaacagaa
      121 agctgttgct gattctctgg ctgtggcaag ggaaactctt cgcggatatc gggatatttc
      181 tgacggtgtg gcaaaacagg tcagggatga agtcagaaat gaggtgcaga agctggacgt
      241 ggcaggactg ataggtgagc gcatcagcca ggattttcag cggctggaag agtcagtcgc
      301 aaacatgaag gcaaacgcgg atgccctgaa cagggatatt gcgacaattc acagcaatat
      361 cgtgcaggaa tacaacaccc ttaaagggta tagctggaaa tggctgggtg gggtgtcagt
      421 ggcttttctg gttatgttct gtgtgctcgg atggggaatg aaaacaatac tcgacaggaa
      481 ctacaacgcc acagcggcgg tgtatcagaa agttgtgaca ctggaagata aactggtgga
      541 gaaacctgtc acggggaaga gccggaaaaa ctgacgcgct tcgcttgtcc aacgcctcac
      601 gacccgcgaa agaatttcgc gaaccgttca ccgttttttt caatatgatt ctgtctgctt
      661 tggtcgataa agcagacgat agtattccag ccttcgtata tataacggta cgtgctcatc
      721 agtaagagct ggcggtattg tgttatcagg gggaagtttt ttcagatact cacgaaatgc
      781 ctggcttgat gccataaaat ctacagtagc atcgataata tgtggggtgt tttcacctaa
      841 ttttgccatg atgataatcc ttatattatc acggtttgtg aatgataggg tgtcactatt
      901 atttatgcgt tagtgaacca gaaaaaatcc cccgttggca tagggggata tgtaaggaga
      961 aataacttcg caggtgttct tgtttgtata acgtgaaaag actgcacgca acttaataag
     1021 tctgccgtac ttactttcag ttttcaacat aaggtttata acaatgtatg gaatggaagt
     1081 gagctttaag gtttcagctc taaaaaataa aatatttatt agttggctgg ttgttgttct
     1141 tgttctgtat gtatataaac actatcgaca tattatgacc gggaacattc cttaccccct
     1201 ctgcgctcgc agaggttttt tttgtcatta attaataatg aactgaaatg cagttccgat
     1261 acctccattt gcacatta
//
