LOCUS       NZ_CP069879             2413 bp    DNA     linear   CON 05-JAN-2024
DEFINITION  Klebsiella pneumoniae strain FDAARGOS_1323 plasmid unnamed5.
ACCESSION   NZ_CP069879
VERSION     NZ_CP069879.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16357465
            Assembly: GCF_016903295.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 2413)
  AUTHORS   Sokurenko,E., Tallon,L., Sadzewicz,L., Zhao,X., Boylan,J., Ott,S.,
            Bowen,H., Vavikolanu,K., Mehta,A., Aluvathingal,J., Nadendla,S.,
            Yan,Y. and Sichtig,H.
  TITLE     FDA dAtabase for Regulatory Grade micrObial Sequences (FDA-ARGOS):
            Supporting development and validation of Infectious Disease Dx tests
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2413)
  AUTHORS   Sokurenko,E., Tallon,L., Sadzewicz,L., Zhao,X., Boylan,J., Ott,S.,
            Bowen,H., Vavikolanu,K., Mehta,A., Aluvathingal,J., Nadendla,S.,
            Yan,Y. and Sichtig,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-FEB-2021) Institute for Genome Sciences, University of
            Maryland School of Medicine, BioPark II, 801 W. Baltimore St., Suite
            619, Baltimore, MD 21201, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: SMRT v. 8.0.0, HGAP v. 4
            Genome Coverage                   :: 771.48x
            Sequencing Technology             :: Pacbio; Illumina
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/05/2024 07:40:22
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,312
            CDSs (total)                      :: 5,188
            Genes (coding)                    :: 5,080
            CDSs (with protein)               :: 5,080
            Genes (RNA)                       :: 124
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 13
            Pseudo Genes (total)              :: 108
            CDSs (without protein)            :: 108
            Pseudo Genes (ambiguous residues) :: 0 of 108
            Pseudo Genes (frameshifted)       :: 48 of 108
            Pseudo Genes (incomplete)         :: 59 of 108
            Pseudo Genes (internal stop)      :: 15 of 108
            Pseudo Genes (multiple problems)  :: 14 of 108
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP069879.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..2413
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="FDAARGOS_1323"
                     /host="Homo sapiens"
                     /culture_collection="FDA:FDAARGOS_1323"
                     /db_xref="taxon:573"
                     /plasmid="unnamed5"
                     /geo_loc_name="USA: WA"
                     /collected_by="ARMADA"
     gene            complement(<1..155)
                     /locus_tag="I6K53_RS26425"
                     /old_locus_tag="I6K53_26425"
     CDS             complement(<1..155)
                     /locus_tag="I6K53_RS26425"
                     /old_locus_tag="I6K53_26425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005229355.1"
                     /GO_function="GO:0005524 - ATP binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="WP_204752689.1"
                     /translation="MALLTVDKLSVHFGEKEMPFRAVDRISYQVEEGEVLGIVGESGSG
                     KSVSSLA"
                     /name="ATP-binding cassette domain-containing protein"
     gene            complement(166..1068)
                     /gene="dppC"
                     /locus_tag="I6K53_RS26430"
                     /old_locus_tag="I6K53_26430"
     CDS             complement(166..1068)
                     /gene="dppC"
                     /locus_tag="I6K53_RS26430"
                     /old_locus_tag="I6K53_26430"
                     /EC_number="7.4.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008912916.1"
                     /GO_process="GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide ABC transporter permease DppC"
                     /protein_id="WP_004236547.1"
                     /translation="MSETTNTTVTRAPEPLSPLREFWHYFRRNKGALIGLIYILLMLLI
                     AVFAPLLAPHLPDEQFRDHLLQPPVWQEGGSWQFILGTDDIGRDILSRLMYGARLSLLV
                     GCLVVALSLLLGVVIGLAAGYFGGWVDALIMRIVDIMLALPSLLLALVLVAIFGPSIVN
                     ASLALTFVALPHYIRLTRAAVLTEVSRDYVTASAVAGAGPVRQMFVNILPNCLAPLIVQ
                     ASLGFSNAILDMAALGFLGMGAQPPTPEWGTMLSDVLQFTQSAWWVVTFPGLAILLTVL
                     AFNLMGDGLRDALDPKLKQ"
                     /name="dppC"
     gene            complement(1081..2100)
                     /gene="dppB"
                     /locus_tag="I6K53_RS26435"
                     /old_locus_tag="I6K53_26435"
     CDS             complement(1081..2100)
                     /gene="dppB"
                     /locus_tag="I6K53_RS26435"
                     /old_locus_tag="I6K53_26435"
                     /EC_number="7.4.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005133865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide ABC transporter permease DppB"
                     /protein_id="WP_015422405.1"
                     /translation="MLQFILRRVGMVIPTFIGITLLTFIFVHLIPGDPVTIMAGERGIS
                     PERHAQLMAALGLDQPYWKQYLHYINGVLHGDLGLSLKSRQPVWEEFVPRFKATLELAA
                     CAMIFAISVGIPVGVLAAVKRGSIFDHTAIGVSLTGYSMPIFWWGIMLIMLVSVNLDLT
                     PVSGRLSDSVFLDDSQPLTGFMLIDTLIWGEDGDFHDAVMHLILPSIVLGTIPLAVIVR
                     MTRSAMLEVLGEDYIRTARAKGLSRIRVIVVHALRNALLPVVTVIGLQVGVMLAGAILT
                     ETIFSWPGIGRWLIDALQRRDYPVVQGGVLLIAILIILVNLCVDLLYGVVNPRIRHKK"
                     /name="dppB"
     gene            complement(2301..>2413)
                     /locus_tag="I6K53_RS26665"
     CDS             complement(2301..>2413)
                     /locus_tag="I6K53_RS26665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004240752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_228289562.1"
                     /translation="LIVAHSTVFEPVRKEVKGYVVDPLGKHHFDNVSIEK"
                     /name="hypothetical protein"
ORIGIN
        1 gccagtgaac tgacggattt accggagccg gattccccga caatcccgag cacctcacct
       61 tcctcaacct gatagctgat ccggtcaacg gcgcggaatg gcatctcttt ttcaccgaag
      121 tgaacagata atttatcaac tgttaataac gccatgtctg cacctctact gcttaagctt
      181 aggatcaagg gcatcacgca atccgtcgcc catcaggtta aacgccagta ctgtcagtaa
      241 aatcgccagg cccgggaagg tcaccaccca ccatgcgctc tgcgtaaact gtaaaacatc
      301 ggacagcatg gttccccact ccggtgtcgg cggctgtgcg cccatcccga ggaaacctaa
      361 tgcagccatg tccagaatag cgttggaaaa acccagagat gcctgcacaa tcagcggcgc
      421 caggcagttc ggcagaatat tgacaaacat ctggcgcacc gggcctgcgc ccgccaccgc
      481 ggaagcggtc acatagtcgc ggctcacttc cgtcagcacc gccgcgcggg tcagacggat
      541 atagtgcggc agtgccacga aagtcagcgc cagcgaggcg ttaacaatcg acgggccgaa
      601 aatcgccacc agcaccagtg ccagcagcag gctcggcagt gccagcatga tatcgacgat
      661 acgcatgatc agggcatcaa cccagccgcc gaaatacccg gcagcgaggc caatcaccac
      721 ccccagcagc agcgacagcg ctaccaccag acaaccgacc agcagtgaaa gccgtgcgcc
      781 gtacatcagg cgcgacagaa tatcgcggcc gatatcatca gtaccgagaa taaactgcca
      841 tgagccgcct tcctgccaga ccggcggctg taataaatga tcacggaact gctcatccgg
      901 cagatgcggg gcgagcagcg gggcaaaaac ggcgatcagc agcatcagca ggatatagat
      961 caggccgatc agcgcgcctt tgttgcgccg gaagtagtgc cagaattcgc gcagcgggga
     1021 aagcggctca ggcgcgcggg tcacggtagt atttgtcgtc tcagacattg tgcgctcctg
     1081 ttatttttta tgacggatcc gcgggttaac gacgccgtag agtaaatcca cgcacaggtt
     1141 aaccaggata atcagaatgg cgatcagcag aacaccgccc tgcacaaccg gatagtcgcg
     1201 gcgctgaagg gcatcaatca gccagcggcc gataccgggc caggaaaaaa tcgtttcggt
     1261 cagaatcgcc ccggccagca tcacgccgac ctgtaagccg ataacggtca ccaccggcag
     1321 cagcgcgttg cgcagtgcat gcaccacaat cacgcggatg cggctcagcc ccttggcgcg
     1381 ggcggtacgg atataatcct cacccagcac ttccagcatt gccgaacggg tcatacggac
     1441 aatcaccgcc agcgggatgg taccgagcac aatggacggc agaataagat gcatcaccgc
     1501 atcatgaaaa tcgccgtcct caccccagat cagggtatca atcagcataa atccggtcag
     1561 cggctgactg tcatcgagga acacactgtc cgataagcgc cctgacaccg gtgtcagatc
     1621 gagattcacc gacaccagca tgatcagcat gatgccccac cagaaaatcg gcatggaata
     1681 accggtcagg gagaccccga tagcagtgtg atcaaagatt gacccgcgtt tgacggccgc
     1741 cagcaccccg accgggatcc cgacagaaat ggcgaaaatc atggcacagg cagcgagttc
     1801 cagcgtggct ttaaagcggg gaacaaactc ttcccacacc ggctgacggc tcttcagaga
     1861 gaggccgagg tcaccgtgca ggacaccatt gatataatga aggtactgtt tccagtaagg
     1921 ctgatccagc cccagagccg ccatcagctg ggcgtggcgt tcaggggaaa ttccccgctc
     1981 acccgccatg atagtgaccg ggtctcccgg aatcagatga acaaatataa acgtcagtaa
     2041 cgtaataccg ataaatgtcg gtattaccat cccgacccgt cggaggataa attgcagcat
     2101 atccctgttt ctcttgtaat ggccgctgac agcgctctgg tcataagacc ggacgaaagg
     2161 gaggactttc cctttatact cacacgatga ataatattgt tttagttatg tgttctgcgt
     2221 cgtccgtgca atgcggttcg atacagggtt gccgcccccc ggaggaggcg gcagaccggt
     2281 aacactcatt tccggtttac ttatttttcg atagacacat tgtcaaagtg gtgtttaccc
     2341 agcggatcca ccacatagcc tttcacttct ttgcgcaccg gctcaaacac tgtggagtgt
     2401 gcaacgatca gtg
//
