LOCUS       NZ_CP069837             1506 bp    DNA     circular CON 03-DEC-2023
DEFINITION  Klebsiella pneumoniae strain FDAARGOS_1327 plasmid unnamed11,
            complete sequence.
ACCESSION   NZ_CP069837
VERSION     NZ_CP069837.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16357469
            Assembly: GCF_016903115.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 1506)
  AUTHORS   Sokurenko,E., Tallon,L., Sadzewicz,L., Zhao,X., Boylan,J., Ott,S.,
            Bowen,H., Vavikolanu,K., Mehta,A., Aluvathingal,J., Nadendla,S.,
            Yan,Y. and Sichtig,H.
  TITLE     FDA dAtabase for Regulatory Grade micrObial Sequences (FDA-ARGOS):
            Supporting development and validation of Infectious Disease Dx tests
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1506)
  AUTHORS   Sokurenko,E., Tallon,L., Sadzewicz,L., Zhao,X., Boylan,J., Ott,S.,
            Bowen,H., Vavikolanu,K., Mehta,A., Aluvathingal,J., Nadendla,S.,
            Yan,Y. and Sichtig,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-FEB-2021) Institute for Genome Sciences, University of
            Maryland School of Medicine, BioPark II, 801 W. Baltimore St., Suite
            619, Baltimore, MD 21201, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: SMRT v. 8.0.0, HGAP v. 4
            Genome Coverage                   :: 763.24x
            Sequencing Technology             :: Pacbio; Illumina
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 12/03/2023 04:05:30
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,467
            CDSs (total)                      :: 5,342
            Genes (coding)                    :: 5,238
            CDSs (with protein)               :: 5,238
            Genes (RNA)                       :: 125
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 104
            CDSs (without protein)            :: 104
            Pseudo Genes (ambiguous residues) :: 0 of 104
            Pseudo Genes (frameshifted)       :: 36 of 104
            Pseudo Genes (incomplete)         :: 63 of 104
            Pseudo Genes (internal stop)      :: 13 of 104
            Pseudo Genes (multiple problems)  :: 8 of 104
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP069837.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1506
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="FDAARGOS_1327"
                     /host="Homo sapiens"
                     /culture_collection="FDA:FDAARGOS_1327"
                     /db_xref="taxon:573"
                     /plasmid="unnamed11"
                     /geo_loc_name="USA: WA"
                     /collected_by="ARMADA"
     gene            906..1346
                     /locus_tag="I6K57_RS27155"
                     /old_locus_tag="I6K57_27155"
     CDS             906..1346
                     /locus_tag="I6K57_RS27155"
                     /old_locus_tag="I6K57_27155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000031238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000031238.1"
                     /translation="MSKDVERITQINDQGEIIGGFVAVIRPKQKSAFQRHFTMNQDALR
                     ILAKELTGEQFKVLMLMLADLDYENFIQIAQADIAETLGMQKTNVSRAVRALLDVGVIF
                     EGPKVGRSKTYRLNEQFGWKGTVTNHKKALKNGFSVIQGGRI"
                     /name="hypothetical protein"
     Typing          complement(126..382)
                     /name="Col(MG828)"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="94.186"
                     /coverage="98.0"
                     /evalue="3.06e-107"
ORIGIN
        1 taatctccaa aacgtctgag ctgccacggt tccggcagcg ccttgagcgc aaccggaaac
       61 cgtctgggga gaaccccaga cccccatcgc tgtaacatcg acggtctacg accaccaacc
      121 agctgaatag ctgccagtgc cgtgcaaatg ggctttgcag ggggctgacg cggttcctgg
      181 cgacctgaaa gcccctggtt aggggtatcg gcgcgcctga cctcctgaaa ccctctgtaa
      241 gcgtttttcg cgccttccat gccctgacgg gcatttaaaa cccgtttcgt gcgcctgaga
      301 gcttctgaga gcgtttgaag agctatctgg cgactcatcc ccgaaagaac aacagcggaa
      361 tcaccgataa catgcgagag gtggcaccgc tcgccgcagc cccagcgacc gaacgttagt
      421 gagcgagtgg gcgaggaagc ggaagagaac cggaaaccac attgagcacg tacgcactga
      481 tgcggggtgt cggggtgaag ccctgaccag atggcaaacg gaatatcgtc gcgggtgacg
      541 gtattacatt tgcacatcct gtcccgattt ctgcggagtt taacggtgaa cggacggcaa
      601 aaaacgtgca ggagctgttg aacgtgaaaa cctcgaaatc tggcaaaaat cacggctgac
      661 gaggcttgca gaggattaag ccagtataca ctccgctatc gttacgtgac tgggtcaggg
      721 cttcgccccg acaccccaaa gagtagctag gataaatatc taatggaatc aatgcgttag
      781 acgcctaata taaagataca gaaaggagaa taaaaacatt aacaaaatct aagggttaca
      841 gttgacatag ttatcaataa tgataacact gttatcatta ttgataactc aaatagggtt
      901 caaagatgag taaggatgtc gagagaatca ctcagataaa tgaccagggt gagattatcg
      961 gcggcttcgt tgccgttatc cgccctaaac aaaaatcagc atttcagagg catttcacca
     1021 tgaatcaaga cgcattacgg atcttggcta aggaattaac cggggagcaa ttcaaggtct
     1081 taatgctgat gcttgcagat ctggattacg aaaacttcat tcagatcgcc caagcagata
     1141 ttgctgaaac tttagggatg cagaaaacga atgttagtcg cgccgttcgc gcgctactgg
     1201 atgttggggt gatctttgag ggacctaaag ttggcagatc aaaaacatac cggctgaatg
     1261 aacaatttgg ttggaaaggc accgtaacca accacaaaaa ggcactcaaa aacggcttta
     1321 gtgtcattca gggcggccgg atttaaagag ccagcggcag gcggacaatc agggctacgt
     1381 gttaacgttt tgaccatgat tgtctatcct gcattgctct tttgccgcat gtcagttcga
     1441 tgcgatgcag gatagggcaa acgccgcaaa atgacgtcat tgacgtcatt cgcaaccttt
     1501 gcccga
//
