LOCUS       NZ_CP069827             2340 bp    DNA     linear   CON 03-DEC-2023
DEFINITION  Klebsiella pneumoniae strain FDAARGOS_1326 plasmid unnamed6.
ACCESSION   NZ_CP069827
VERSION     NZ_CP069827.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16357468
            Assembly: GCF_016903155.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 2340)
  AUTHORS   Sokurenko,E., Tallon,L., Sadzewicz,L., Zhao,X., Boylan,J., Ott,S.,
            Bowen,H., Vavikolanu,K., Mehta,A., Aluvathingal,J., Nadendla,S.,
            Yan,Y. and Sichtig,H.
  TITLE     FDA dAtabase for Regulatory Grade micrObial Sequences (FDA-ARGOS):
            Supporting development and validation of Infectious Disease Dx tests
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2340)
  AUTHORS   Sokurenko,E., Tallon,L., Sadzewicz,L., Zhao,X., Boylan,J., Ott,S.,
            Bowen,H., Vavikolanu,K., Mehta,A., Aluvathingal,J., Nadendla,S.,
            Yan,Y. and Sichtig,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-FEB-2021) Institute for Genome Sciences, University of
            Maryland School of Medicine, BioPark II, 801 W. Baltimore St., Suite
            619, Baltimore, MD 21201, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: SMRT v. 8.0.0, HGAP v. 4
            Genome Coverage                   :: 1046.3x
            Sequencing Technology             :: Pacbio; Illumina
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 12/03/2023 03:43:46
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,440
            CDSs (total)                      :: 5,318
            Genes (coding)                    :: 5,186
            CDSs (with protein)               :: 5,186
            Genes (RNA)                       :: 122
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 132
            CDSs (without protein)            :: 132
            Pseudo Genes (ambiguous residues) :: 0 of 132
            Pseudo Genes (frameshifted)       :: 59 of 132
            Pseudo Genes (incomplete)         :: 75 of 132
            Pseudo Genes (internal stop)      :: 20 of 132
            Pseudo Genes (multiple problems)  :: 20 of 132
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP069827.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..2340
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="FDAARGOS_1326"
                     /host="Homo sapiens"
                     /culture_collection="FDA:FDAARGOS_1326"
                     /db_xref="taxon:573"
                     /plasmid="unnamed6"
                     /geo_loc_name="USA: WA"
                     /collected_by="ARMADA"
     gene            complement(<1..>2340)
                     /locus_tag="I6K56_RS27055"
                     /old_locus_tag="I6K56_27060"
     CDS             complement(<1..>2340)
                     /locus_tag="I6K56_RS27055"
                     /old_locus_tag="I6K56_27060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="RHS repeat domain-containing protein"
                     /protein_id="WP_204745160.1"
                     /translation="HADGSVTQSQFDAVGRLKAQTDAAGRTTEYSPDVVTGLITRITTP
                     DGRASAFYYNHHSQLTSATGPDGLELRREYDESGRLIQETAHNGDITRYRYDNPHSDLP
                     CATEDATGSRKTMTWSRYGQLLTVTDCSGYVTRYDHDRFGQMTAVHREEGLSQYRAYDS
                     RGQLIAVKDTQGHETRYEYNAAGDLTAVIAPDGSRNGTQYDAWGKPVRTTQGGLTRSME
                     YDAAGRVIRLTSENGSHTTFRYDVLDRLIQETGFDGRTQRYHHDLTGKLIRSEDEGLVT
                     HWHYDEADRLTHRTVKGEPAEQWQYDERGWLTGISHLSEGHRVTVHYGYDEKGRLTGER
                     QTVHHPQTEALLWQHETRHAYNAQGLANRCIPDSLPAVEWLTYGSGWLSGMKLGDTPLV
                     EYTRDRLHRETLRSFGRYELTTAYTSAGQLQSQHLNSLQYDRDYTWNDNGELIRISSPR
                     QTRSYSYSDTGRLTGVHTTAANLDIRIPYATDPAGNRLPDPELHPDSTLSMWPDNRIAR
                     DAHYLYRYDRHGRLTEKTDLIPEGVIRTDDERTHRYHYDSRHRLVHYTRTQYAEPLVES
                     RYLYDPLGRRVAKRVWRRERDLTGWMSLSWKPEVTWYGWDGDRLTTIQNDRTRIQTVYQ
                     PGSFTPLIRVETATGELAKTQRRSLADALQQSGGEDGGSVVFPPVLVQMLDRLESEILA
                     DRVSEESRRWLASCGLTVEQIQNQMDPVYTPARKIHLYHCDHRGLPLALVSTGGTAAWY
                     AEYDEWGNQLNEENPHQLQQLIRLPG"
                     /name="RHS repeat domain-containing protein"
ORIGIN
        1 gacccggcag gcggatgagc tgctgcagct gatgcgggtt ctcttcattc agctggttac
       61 cccattcatc gtattctgcg taccacgctg ctgtccctcc cgtgctgaca agcgccagcg
      121 gcaggccgcg atggtcgcag tggtacaggt ggatttttcg cgccggcgtg tacaccgggt
      181 ccatctggtt ttgtatctgc tccaccgtca ggccgcacga tgccagccag cggcggcttt
      241 cctcactcac ccggtcagcc aggatttcac tttccagccg gtcgagcatc tgcaccagca
      301 ccggcgggaa caccacactg ccaccgtctt cgccgccgga ctgctgaagg gcatccgcca
      361 ggctgcggcg ctgcgttttc gccagctcac cggtggcagt ttcaactctg atgagtggcg
      421 tgaagctccc cggctgataa accgtctgga tgcgggttct gtcgttctgt attgtggtca
      481 gccggtcgcc gtcccagccg taccaggtca cttccggttt ccatgacagc gacatccagc
      541 ccgtcaggtc ccgttcacgc cgccataccc gttttgccac cctgcggccc agcgggtcgt
      601 aaagatagcg actttcgacc agcggctctg catattgtgt ccgcgtgtag tgcaccagcc
      661 ggtgccggct gtcgtaatgg taccggtgag tccgctcatc atccgtgcgg ataacccctt
      721 ccgggatgag gtcggttttc tccgtcagcc tgccgtgacg gtcataccgg taaagatagt
      781 gcgcgtcacg ggcgatacgg ttatccggcc acatgctgag ggtgctgtcc gggtgcagct
      841 ccgggtcggg caggcggttg cctgccgggt ccgtggcata cgggatgcgg atatccaggt
      901 tcgctgccgt ggtgtggacg ccggtcagcc tgccggtgtc gctgtagctg taactccggg
      961 tctggcgcgg gctgctgatg cggatgagtt cgccgttgtc gttccaggtg taatcgcggt
     1021 catactgcag gctgttcagg tgctggctct gtaactgccc ggcagaggtg taagcggtgg
     1081 tgagttcata acggccgaag ctgcgcagcg tttcccggtg caggcggtcg cgggtgtact
     1141 ccaccagcgg tgtgtcgccg agtttcatgc ctgacagcca gccgctgccg taggtcagcc
     1201 attccacggc gggcaggctg tccggtatac agcggttcgc cagtccctgc gcgttgtaag
     1261 cgtgtctggt ttcatgctgc cagagcagtg cttccgtctg cgggtgatgc accgtctggc
     1321 gctcaccggt caggcggcct ttctcatcat acccgtaatg caccgtcacc cggtggcctt
     1381 cgctgagatg gctgatgcct gtcagccagc cgcgttcgtc atactgccac tgctctgcag
     1441 gttcaccctt cacggtgcgg tgagtgaggc ggtctgcttc gtcatagtgc cagtgggtga
     1501 ccagcccctc atcctcgctg cggataagtt tgccggtcag gtcgtggtga taacgctgtg
     1561 tgcggccgtc aaagccggtt tcctgtatca gccggtcaag tacatcgtaa cggaaggtgg
     1621 tgtggctgcc gttttcactg gtcaggcgga tgacccgtcc ggcagcatcg tattccatac
     1681 tgcgcgtcag accgccctgt gtggtacgaa cgggctttcc ccacgcatcg tactgtgtcc
     1741 cgtttctgct gccgtccggg gcaatgacgg cggtcaggtc accggcggcg ttgtattcat
     1801 accgcgtttc atggccctgc gtgtctttca ccgcaattaa ctgtccacgg ctgtcgtatg
     1861 cgcggtactg actcagccct tcctcgcggt gcaccgccgt catctgacca aaacggtcat
     1921 ggtcataacg ggttacataa ccggaacagt cagtgacggt cagcaactga ccgtaacggc
     1981 tccatgtcat ggttttccgg ctgccggtgg catcctccgt tgcgcagggt aagtcactgt
     2041 gtggattatc ataacggtag cgggtgatat cgccgttgtg tgcggtttcc tgaatcagac
     2101 ggccggattc atcatattcc cggcgcaatt ccagcccgtc aggcccggtg gctgacgtta
     2161 actggctgtg gtggttatag taaaatgccg atgccctgcc atccggtgtg gtgatgcgcg
     2221 tgatgagtcc cgtcaccaca tccgggctgt actcagtcgt ccggcctgcg gcatccgtct
     2281 gtgccttaag cctgcccacc gcgtcaaact gactctgcgt gacgctgccg tccgcgtgtt
//
