LOCUS       NZ_CP069819             3852 bp    DNA     circular CON 03-DEC-2023
DEFINITION  Raoultella planticola strain HH15 plasmid pHH15_4, complete
            sequence.
ACCESSION   NZ_CP069819
VERSION     NZ_CP069819.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14258342
            Assembly: GCF_011290675.2
KEYWORDS    RefSeq.
SOURCE      Raoultella planticola
  ORGANISM  Raoultella planticola
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Raoultella.
REFERENCE   1  (bases 1 to 3852)
  AUTHORS   Kang,M., Chmara,J., Naushad,S. and Huang,H.
  TITLE     Complete Genome Sequences of a Canadian Raoultella planticola
            strain, Obtained using Oxford Nanopore and Illumina Sequencing
            Technologies
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3852)
  AUTHORS   Huang,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-FEB-2021) Research and Development, Science Branch,
            Canadian Food Inspection Agency, 960 Carling Ave Bldg. 22, Ottawa,
            Ontario K1A 0Y9, Canada
REFERENCE   3  (bases 1 to 3852)
  AUTHORS   Huang,H., Chmara,J.T. and Duceppe,M.-O.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-MAR-2020) Research and Development, Science Branch,
            Canadian Food Inspection Agency, 960 Carling Ave Bldg. 22, Ottawa,
            Ontario K1A 0Y9, Canada
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 08-JAN-2021
            Assembly Method                   :: Unicycler v. v0.4.9b
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 121.6x
            Sequencing Technology :: Oxford Nanopore MinION; Illumina MiSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 12/03/2023 04:01:00
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,675
            CDSs (total)                      :: 5,551
            Genes (coding)                    :: 5,438
            CDSs (with protein)               :: 5,438
            Genes (RNA)                       :: 124
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 85
            ncRNAs                            :: 14
            Pseudo Genes (total)              :: 113
            CDSs (without protein)            :: 113
            Pseudo Genes (ambiguous residues) :: 0 of 113
            Pseudo Genes (frameshifted)       :: 52 of 113
            Pseudo Genes (incomplete)         :: 80 of 113
            Pseudo Genes (internal stop)      :: 37 of 113
            Pseudo Genes (multiple problems)  :: 49 of 113
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP069819.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3852
                     /organism="Raoultella planticola"
                     /mol_type="genomic DNA"
                     /strain="HH15"
                     /db_xref="taxon:575"
                     /plasmid="pHH15_4"
                     /collection_date="2010"
                     /collected_by="Canadian Food Inspection Agency"
     gene            441..1280
                     /locus_tag="G9395_RS28220"
                     /old_locus_tag="G9395_028220"
     CDS             441..1280
                     /locus_tag="G9395_RS28220"
                     /old_locus_tag="G9395_028220"
                     /inference="COORDINATES: protein motif:HMM:NF042851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HipA family kinase"
                     /protein_id="WP_048987779.1"
                     /translation="MHIEFKPSSDFNNVKINRAPDGAMAETFSCNINWGENLDSRSYVK
                     CFSDRKIMAISNEITGYILAKEAGLPVPEKCALIALPQEIKDEFKSRSGEECFEYGFAM
                     MMADGSTPNAIIKIHSPDGDFANSIFMDALNKWPQTARLIAFDEWVANEDRNLGNFIIT
                     PNNNIVVIDHSNLPCEMLWECDDLINEKAYTNKLVLIYELCKVKGRSYSIPDDAFINKE
                     ASHHALILTSSIAELEAWWDYLLDQPRKAKLKDFLNVRANKARTLPYNQQSGLRMTA"
                     /name="HipA family kinase"
     gene            1277..2128
                     /locus_tag="G9395_RS28225"
                     /old_locus_tag="G9395_028225"
     CDS             1277..2128
                     /locus_tag="G9395_RS28225"
                     /old_locus_tag="G9395_028225"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_048295908.1"
                     /translation="MINIQELLAASKAKENNQLVKGVWFLIQWSPDDYSQERFNIGVAF
                     SSERGEKQVKFTKSFKELSNWYGGNLTKQGDMVIKIATHTFIGKSLDKFSSGFFESGIH
                     YVPMGMAQGESIEKIMNVLFKDVVPMAQEKQNIARASYTTTRNIITVVREAISKNSVLK
                     DIMPENPMVETLSGISVKVPIQFRSNAGTIVSADYATSDTVENELLRSFRDIDLILNGN
                     DFDNVNSFLLLPASAKGEAKKISNLISDYTSSLKSKGVETISAHQPSSLVNKIDGWYKE
                     VA"
                     /name="hypothetical protein"
     gene            2889..3080
                     /locus_tag="G9395_RS28230"
                     /old_locus_tag="G9395_028230"
     CDS             2889..3080
                     /locus_tag="G9395_RS28230"
                     /old_locus_tag="G9395_028230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000166328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_032421723.1"
                     /translation="MTKQQKTALNMAKFIQNQSLLLLEKLNELDLDAEADLCEKLHDDA
                     EHLFRTLSSRLDELQDGN"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            3080..3490
                     /locus_tag="G9395_RS28235"
                     /old_locus_tag="G9395_028235"
     CDS             3080..3490
                     /locus_tag="G9395_RS28235"
                     /old_locus_tag="G9395_028235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005229777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_048295909.1"
                     /translation="MARVSISEAARLVKVSRPTIYKMINSGKLSYTSVVKHGKGIKVID
                     TSELIRVFGSLDGVIDDVKSDAESTGINSVGLHDLQHRIALLEAENDGLKGAVKARDEH
                     IDSLRQAMQLLEHKHEPSSPPHSPWWKFWKKS"
                     /name="helix-turn-helix domain-containing protein"
     Typing          complement(2367..2769)
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="88.78"
                     /coverage="99.0"
                     /evalue="4.8099999999999985e-137"
ORIGIN
        1 atcgccggtg agtcgtccgg cgacttgcca taacgtgatt gccggccgtc gacgaacccg
       61 attcctgaac gtgctgaaaa ccggttttcc ggctgcgccg gcaacgcttc acggccacgc
      121 aataaattgc gtccccgttc accgttttcg gatgggaaga acgccggaaa caggacttac
      181 cccggctgaa tggcgtgaat ttccgcgcta tgcacttgtg cgcatactca tgcatgccgt
      241 aaaaacagag cctgcgcgtt tctggcgggt tttcgggtgg tttgttgcct gttttgccgg
      301 tttcccgtca gaaacgccct gagggcctct caggcggtgc tgataacgga tgttatggta
      361 aatgtgaaaa acatttccct tgataaaaaa gctttcaaga aaaataatac agcaaccaca
      421 aactttgatg gaccagagct atgcacatag aatttaagcc gtcatctgac tttaataacg
      481 ttaaaattaa tagagctcct gacggcgcta tggcagaaac ttttagctgc aatattaact
      541 ggggcgagaa tcttgacagc agaagctatg tgaaatgctt tagcgatcgc aagattatgg
      601 caatttccaa cgaaataact ggttatattt tggcgaagga ggcagggctg cctgtacctg
      661 aaaaatgtgc tttaatagca ttgccacaag aaataaaaga tgaatttaaa tccaggtctg
      721 gcgaagagtg ctttgaatac ggatttgcta tgatgatggc cgacgggagc acgcctaacg
      781 ctattataaa aattcacagc cctgatgggg attttgcaaa ttccatcttt atggatgctt
      841 taaataaatg gcctcaaaca gctaggctta tagcgtttga tgaatgggtt gccaatgaag
      901 ataggaattt aggtaacttt attattacgc caaataataa tattgtggtc atagatcata
      961 gtaatctccc atgcgaaatg ctatgggagt gtgatgactt aataaatgaa aaggcataca
     1021 ccaataaatt ggtgttgatt tatgaattat gtaaggtaaa ggggcgttca tactccattc
     1081 ctgatgatgc ctttattaat aaagaagcta gccaccatgc tttaatatta acttcttcaa
     1141 ttgcagagct tgaagcatgg tgggattatc ttttagatca gccaagaaaa gctaagttga
     1201 aagatttttt gaacgtgcgt gccaacaaag caagaacatt gccttataac cagcagtctg
     1261 ggctaaggat gacagcatga taaacataca agagttactt gccgcaagca aagctaagga
     1321 aaacaatcag cttgttaaag gggtttggtt ccttattcaa tggtcacctg atgactatag
     1381 ccaagagcgt tttaatattg gtgttgcttt ttcatcagaa agaggcgaga aacaagttaa
     1441 gttcaccaaa tccttcaagg aattatctaa ttggtatggt ggtaacttaa caaagcaagg
     1501 tgatatggtt ataaaaatag ctacccatac ttttattggg aaaagccttg ataaattttc
     1561 cagtgggttt ttcgagagtg gaattcatta tgtccctatg ggtatggctc aaggtgagtc
     1621 gatagaaaaa ataatgaatg tgctatttaa agatgtagtt cccatggctc aagaaaagca
     1681 aaatatcgct agggctagtt atacaacaac acgaaatatt ataactgttg ttagagaagc
     1741 catatcaaaa aatagcgtgc ttaaagacat tatgcctgag aatccaatgg tggaaacgct
     1801 ttcaggaatt tcggttaagg ttcctattca atttagaagt aatgcaggaa ctatagtgtc
     1861 ggctgattac gctacgagcg atacagtaga aaatgagttg cttaggtctt ttagagatat
     1921 tgatcttatc ttaaatggca atgattttga taatgtaaat agctttctct tgttgccagc
     1981 atctgccaaa ggggaggcta aaaaaattag caatctaatt agtgattata catcttcttt
     2041 aaaatctaag ggcgttgaaa ctattagtgc tcatcagcca tcatccctag tgaataaaat
     2101 tgatggttgg tataaagagg ttgcataatc tttatacgca tcctatttct tgacgctgag
     2161 gattggcgat cgtatcttag aggccaaacg aaaaaaaccg ccttggcggg cggttttttc
     2221 gaaggttcgc aagagttggc gctcttttga accgtggtaa ctggctttaa cggagcgcag
     2281 taaccaaatc tgtccttcca gtgtagccgt atttgggctt tcacttcaag aactctgcgt
     2341 taatacacct tcgctccgta aacctgttac cagtggctac caccagtggc aattcgttgt
     2401 gtcttcagag attggaatca agagtacagt tgctttgaag gcgtggtagt cggactgaac
     2461 ggggggttcg tgcatacagt ccagcttgga gcgaactgcc tacccggaac tgagtgtcag
     2521 gcgtggaatg agacaaacgc ggccataaca gcggaatgac accggtaaac cgaaaggcag
     2581 gaacaggaga gcgcacgagg gagctaccag ggggaaacgc ctgggatctt tatagtcctg
     2641 tcgggtttcg ccaccactga tttgagcgtc agatttcgtg atgcttgtca ggggggcgga
     2701 gcctatggaa aaacggccgc catgcggcct ttccttttta catcacgcga ccgttcggtt
     2761 ttctcgagct ttatacgcat gctcctgccg ctcgccgcag ccgaacggca ggagcgtagc
     2821 gactgagtga gcgaggaagc ggaaaagaga acatccctac attgagcact gacgctctga
     2881 ggccccttat gacgaaacaa cagaaaacag cgctgaacat ggctaaattc atccagaatc
     2941 agtctctgct cctgctggag aagcttaacg agcttgatct cgatgctgag gccgaccttt
     3001 gtgagaaact ccacgatgat gcggagcatc ttttccgtac actgtcctcg agactggatg
     3061 aattacagga tggtaactga tggccagagt gtctattagt gaagcagcac ggcttgttaa
     3121 ggttagtcgc cctactattt acaagatgat taacagtggt aagttaagtt acacctctgt
     3181 tgtaaagcac gggaagggta ttaaagttat tgatacatca gagcttatta gagtgtttgg
     3241 ttctcttgat ggtgtcatcg atgatgtaaa aagtgacgca gaatctacag gtattaacag
     3301 cgttggttta catgatttac aacatagaat cgctttactt gaagctgaaa acgatggtct
     3361 taaaggggct gttaaggctc gagatgagca tattgattcc cttcgtcagg ctatgcagct
     3421 tctggagcac aagcacgaac cttcttcacc accccattcc ccgtggtgga aattctggaa
     3481 aaaatcctga tcccgccatg cttgagtttt cctctccggc catcccgggg cgttcctgaa
     3541 ccttcccaaa aatcgccaga tccgggaaca ctcctcacca cgaaaaatac ccacacacca
     3601 cgcaaaatta aaattttgca gataactcct tattatcagt tggttaggtt ttattaaatt
     3661 acgcagtatt accttctgta aggtcaatcc aagtcgtcgg tgattcgtgt acgacttgcc
     3721 gacgactcgt catagagtca tcgacgactc actccacact atcagtaact tatgacgact
     3781 tgactctaga gtcgaatcgt cgctttggcg tttttttgac cacggtgact ctagagtcaa
     3841 gtcacgagtc ga
//
