LOCUS       NZ_CP069818             4775 bp    DNA     circular CON 03-DEC-2023
DEFINITION  Raoultella planticola strain HH15 plasmid pHH15_3, complete
            sequence.
ACCESSION   NZ_CP069818
VERSION     NZ_CP069818.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14258342
            Assembly: GCF_011290675.2
KEYWORDS    RefSeq.
SOURCE      Raoultella planticola
  ORGANISM  Raoultella planticola
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Raoultella.
REFERENCE   1  (bases 1 to 4775)
  AUTHORS   Kang,M., Chmara,J., Naushad,S. and Huang,H.
  TITLE     Complete Genome Sequences of a Canadian Raoultella planticola
            strain, Obtained using Oxford Nanopore and Illumina Sequencing
            Technologies
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4775)
  AUTHORS   Huang,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-FEB-2021) Research and Development, Science Branch,
            Canadian Food Inspection Agency, 960 Carling Ave Bldg. 22, Ottawa,
            Ontario K1A 0Y9, Canada
REFERENCE   3  (bases 1 to 4775)
  AUTHORS   Huang,H., Chmara,J.T. and Duceppe,M.-O.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-MAR-2020) Research and Development, Science Branch,
            Canadian Food Inspection Agency, 960 Carling Ave Bldg. 22, Ottawa,
            Ontario K1A 0Y9, Canada
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 08-JAN-2021
            Assembly Method                   :: Unicycler v. v0.4.9b
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 121.6x
            Sequencing Technology :: Oxford Nanopore MinION; Illumina MiSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 12/03/2023 04:01:00
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,675
            CDSs (total)                      :: 5,551
            Genes (coding)                    :: 5,438
            CDSs (with protein)               :: 5,438
            Genes (RNA)                       :: 124
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 85
            ncRNAs                            :: 14
            Pseudo Genes (total)              :: 113
            CDSs (without protein)            :: 113
            Pseudo Genes (ambiguous residues) :: 0 of 113
            Pseudo Genes (frameshifted)       :: 52 of 113
            Pseudo Genes (incomplete)         :: 80 of 113
            Pseudo Genes (internal stop)      :: 37 of 113
            Pseudo Genes (multiple problems)  :: 49 of 113
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP069818.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4775
                     /organism="Raoultella planticola"
                     /mol_type="genomic DNA"
                     /strain="HH15"
                     /db_xref="taxon:575"
                     /plasmid="pHH15_3"
                     /collection_date="2010"
                     /collected_by="Canadian Food Inspection Agency"
     gene            join(4609..4775,1..76)
                     /locus_tag="G9395_RS28185"
                     /old_locus_tag="G9395_028185"
     CDS             join(4609..4775,1..76)
                     /locus_tag="G9395_RS28185"
                     /old_locus_tag="G9395_028185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001713065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_023316026.1"
                     /translation="MALVRSGNKSKIFEADTKFNSVFDTEYKPGETCEYEGIYKCTGCG
                     KEVTIAGGKTIPPQNHHQHTPAQGNIRWQLFVYAQ"
                     /name="hypothetical protein"
     gene            complement(739..954)
                     /locus_tag="G9395_RS28190"
                     /old_locus_tag="G9395_028190"
     CDS             complement(739..954)
                     /locus_tag="G9395_RS28190"
                     /old_locus_tag="G9395_028190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_029590204.1"
                     /translation="MTELEKQLLSALEQLQQDYSQRLDEWESAFAEWRSMCGLMQRENA
                     MLNERVSDLSTQVLSLSEQLRRLSGN"
                     /name="MbeD family mobilization/exclusion protein"
     gene            complement(961..1452)
                     /locus_tag="G9395_RS28195"
                     /old_locus_tag="G9395_028195"
     CDS             complement(961..1452)
                     /locus_tag="G9395_RS28195"
                     /old_locus_tag="G9395_028195"
                     /inference="COORDINATES: protein motif:HMM:NF016710.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_181469608.1"
                     /translation="MSSLLTLAKDLEQQSKARQQSTGEMLKAAFSEHEQSVRAELSASA
                     RRISDAILAHEQSMSEAMEKNRRSVLRTAGRTWLTILMVSALLIGTSGSILWWQGQQIT
                     DNYTHLRQQEDTLAKMTARTWGVSYQESSDGRRFLILPPGMQTEAIPYDGTTWIRLKQE
                     "
                     /name="MbeB family mobilization protein"
     gene            complement(<1487..2191)
                     /locus_tag="G9395_RS28705"
                     /old_locus_tag="G9395_028200"
                     /pseudo=""
     CDS             complement(<1487..2191)
                     /locus_tag="G9395_RS28705"
                     /old_locus_tag="G9395_028200"
                     /inference="COORDINATES: protein motif:HMM:NF015397.3"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            complement(2130..2453)
                     /locus_tag="G9395_RS28205"
                     /old_locus_tag="G9395_028205"
     CDS             complement(2130..2453)
                     /locus_tag="G9395_RS28205"
                     /old_locus_tag="G9395_028205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000957083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_163063187.1"
                     /translation="MLTMWVTEGEHRRLLERCDGRPLAAWMRQTCLDEKPARTGKLPSL
                     SPALLRQLAGMGNNLNQIARRVNAGGGTGHDRVQIVAALMAIDAGLERLRHAVLEKGTD
                     DDR"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            3104..>3226
                     /locus_tag="G9395_RS28710"
                     /pseudo=""
     CDS             3104..>3226
                     /locus_tag="G9395_RS28710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001487656.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /name="replication initiation protein"
     gene            complement(3546..3902)
                     /locus_tag="G9395_RS28210"
                     /old_locus_tag="G9395_028210"
     CDS             complement(3546..3902)
                     /locus_tag="G9395_RS28210"
                     /old_locus_tag="G9395_028210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000075993.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HigA family addiction module antitoxin"
                     /protein_id="WP_023316024.1"
                     /translation="MSQATRKPSTVGDIILYEYLEPSGLKINDLAEMLNVHRNSASALV
                     NNNRKLSTDMAFRLAKAFDTTAKFWLNIQQSVDLWEVTSSPRLQEEIDRVIPAHEIIER
                     KHIVDSSEKKHAIA"
                     /name="HigA family addiction module antitoxin"
     gene            complement(4105..4422)
                     /locus_tag="G9395_RS28215"
                     /old_locus_tag="G9395_028215"
     CDS             complement(4105..4422)
                     /locus_tag="G9395_RS28215"
                     /old_locus_tag="G9395_028215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001183575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="WP_023316025.1"
                     /translation="MQQDHEHDDCRIQFRDDWLYQFYKYGKANRKIPTAISASLGRKLD
                     MLNAADKVGDLRSPPGNRFENLNPPLTGYSSIRVNEKYRLIFKWGENGVEDLYLDPHDY
                     R"
                     /name="type II toxin-antitoxin system RelE/ParE family
                     toxin"
     Typing          complement(2569..2742)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="96.0"
                     /coverage="100.0"
                     /evalue="1.21e-74"
     Typing          2666..3213
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="92.559"
                     /coverage="90.0"
                     /evalue="0.0"
     Typing          complement(642..2140)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="91.287"
                     /coverage="100.0"
                     /evalue="0.0"
     Typing          complement(2137..2453)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="92.453"
                     /coverage="99.0"
                     /evalue="1.45e-59"
ORIGIN
        1 cccaccacaa aaccaccacc aacatacccc cgcgcaaggg aacattcgtt ggcaattgtt
       61 tgtttatgct cagtgaggta tagaaaatgg cagatcgtcg accactcaac ccacacgttg
      121 tcgttcctaa accaggcggc ggaactcaac ctcgtgaccg taacaatgac ggaagggtca
      181 gaggaaaacg ctcagatgca ggaaagccac gaaaataaca gcaagccgcc agcctggcgg
      241 cttttttata tctgcagctg atactgattt accataacat ccgttgcccg caccgctgaa
      301 acggggttgg ctgcgtttcc ggtgccagac gcgagaaagt ggcgacagac atgacgaaaa
      361 aacaccggaa acgcagccgc tggatattac actgatgcat agtcatgcag ccagatgcat
      421 ggcgcgtaaa gtcacactaa aatcagcgcg aacgccttaa aaaccggcaa atgcctctcc
      481 ggcaactcac acagctccat caccaggtaa aaacagttca gcagggcttc aataacgttg
      541 agaattttca tcacttcctc cgggataagt cactaccatt ccggtagtca gcctatttag
      601 caggaacgcg atgagccctt cttcgtgcgg gctgtcacct catcttcgga ccatcgaaac
      661 tcttctgctt ctgtcggagc gtcagctcca gctcgttctg acgctgatac tccagtacag
      721 ccttctcctc gatggcattc agttcccgga caagcggcgc agctgctcgc ttaaactcag
      781 cacctgcgtg ctcaagtccg acacgcgctc gttcagcatc gcgttctccc gttgcataag
      841 cccacacatg ctccgccatt ccgcgaaggc gctctcccat tcgtccagcc tttgcgagta
      901 gtcctgctgt agctgctcta atgcgctcag caactgcttt tccagctctg tcattttccg
      961 ctactcctgt ttcaggcgga tccatgtcgt cccgtcgtaa gggatggctt cggtttgcat
     1021 ccccggcggc aggataagaa acctccggcc gtcgctgctc tcctgatagc tcactcccca
     1081 cgtccgggcg gtcattttcg ccagggtatc ttcctgctga cgaagatgcg tgtaattgtc
     1141 ggttatctgc tgcccctgcc accacagaat gctcccgctc gtgccgatca gcagcgctga
     1201 caccatcagg atggtgagcc atgtccgccc ggcagtccgc agtacgctcc gccggttttt
     1261 ctccatcgcc tcgctcatac tctgctcgtg ggcgaggatg gcgtcgctga ttctcctcgc
     1321 gcttgcgctc agttccgctc tgacagactg ctcgtgctcg ctgaatgcgg ctttcagcat
     1381 ctcgccggta ctctgctgcc gcgctttcga ttgctgctct aagtccttcg ccagcgttaa
     1441 aagactgctc atagatggct cccttcagtc ggatgtttcg ccccccgtcc gggtcggcaa
     1501 tgctgatact gcttttcgtg gtgcgcacca cctcaaaacc tgaccgttcc agcgcctcag
     1561 tgacatcctg acggcttttc agctccccgg acgaagcaag cgtcagcagt ccgcgcgtga
     1621 tggcttctgc ggcctcctgc ttcgttttcg gcagtccgga cggcgtgacc agcgcccggc
     1681 ggttttccgg tgcgttcggg tcgtgcagcc ccagtctgcc gttcacgatg gtctgccagg
     1741 catcgatgcg cggtcggtcg gcgcggtcgt agtacggctg gagccgcctg ccggtcagta
     1801 gctcggtatt ggggatcaga aagttcagct ccagacgccc cttgtcctcg tgctccaccc
     1861 acagaatgct gtactgatct ttatcgagtc cgggcatcag aacccgctcg aagctggcca
     1921 tcagtttttc ccgctggccg ggaggcagat cggcctccgc aaacgacagt acgccggaag
     1981 tgtatttctt cacgtaaggc gacgcgtcaa tcagctcccg gacttcttcc ggcttcccct
     2041 gcaggacgct ggcgccttca cgctgccggt ctttacccag cagatagtcc accggcccgg
     2101 cgccaccgcc gcgaccgcgt ggatgaaatt taacgatcat cgtccgttcc tttctcaaga
     2161 acggcgtgcc gcagccgctc aagcccggca tcgatggcca tcagcgccgc cacaatctgt
     2221 accctgtcat ggccggtgcc gccgccggcg ttaacacggc gggctatctg gttcaggtta
     2281 ttgcccatac cggcaagctg gcgcagcagc gccggcgaga gtgaggggag ctttccggtg
     2341 cgcgcaggct tttcgtccag gcaggtctgc cgcatccacg ccgccagcgg cctgccgtcg
     2401 cagcgctcaa gcagccgccg gtgctcgccc tccgtcaccc acatggtgag catcttgttc
     2461 cgtttctctg acaaaccggc ctcctgataa cgccgggacg ggcgggaaag cctttcccgg
     2521 tcggcgcggg gttggacaag ccgcaggcgc gtcagtggct tttggcgggt ttcggggcgc
     2581 agccctgaac cagtcacgta gcgctagcgg agtgtatact ggcttaatat gttggcacgg
     2641 atacggaaat cagtgaagtg cttcatgtgg caggagaaaa aaggcggcaa cggcgcgtca
     2701 gcagaatatg cgatacagga tatattccgc ttcctcgctc actgactcgc tgcgctcggt
     2761 cgttcggctg cggcgagcgg tgcgggctta cgaacggggc ggaaatttcc tggaagatgc
     2821 caggaagaaa cttaacaggg aagcgataag gccacggcag agccggtttt ccataggctc
     2881 cgcccccctg acgagcatca cagaatctga cgctcaaatc agtggtggcg aaacccgaca
     2941 ggactataaa gataccaggc gtttccccct gatggctccc tcgtgcgctc tcctgttcct
     3001 gcctttcggt ttaccggtgt cattccgctg ttatggccgc gtttgtctca ttccacgcct
     3061 gacactcggt tccgggtagg cagttcgctc caagctggac tgtatgcacg aaccccccgt
     3121 tcagtccgac cgctgcgcct gttccggtaa ctatcgactt gagtccaacc cggaaagaca
     3181 cgacaaaacg ccactggcag cagccactgg taacaggatt agcagagcga ggtatgtagg
     3241 cggtgctaca gagttcttga agtggtggcc taactacggc tacactggaa ggacagtatt
     3301 tggtatctgc gctctgctga agccagttac caggttaagc agttccccaa ctgacttaac
     3361 cttcgaaaaa ccgcctcccc aggcggtttt ttcgtttaca gagcaagaga ttacgcgtac
     3421 agagcacgga tctcaagaag atcgtaagaa gaaagttaac atgagcgttt ttatccctca
     3481 aaaagaaggc ttctagttat agaagccttc tttttgaggg ataacttata tttttttaaa
     3541 aaaaatcatg caatagcatg tttcttctca gaactatcaa caatgtgttt cctttctatg
     3601 atttcatgag cgggaatcac tctgtctatt tcttcttgca atcgagggct actagtaacc
     3661 tcccataaat caacagactg ctgtatattt agccagaact ttgcagtggt atcgaaggct
     3721 ttagccaacc taaaagccat atcggtagac agctttctat tattgttaac taaagcactg
     3781 gcagagtttc tatgcacatt caacatttca gccaagtcat tgatttttaa accacttggt
     3841 tcgagatatt cataaagaat aatatcccct acagttgatg gttttctagt tgcttgggac
     3901 atgctttact cctaaatttt ttacttctct ctgttagatg aggaagataa gtatttcgtc
     3961 tattaccagc tgtagcgatg agtaattatc ttaaatatag tcacgtcatt ttttttatta
     4021 atcattattt gtaatgacat tttaatgtag gtgagggaac gcctcaccta cttgttttat
     4081 aagataacag ccacgacctg ttatctatcg gtaatcatgt ggatcgagat acaaatcctc
     4141 gactccgttt tcaccccact taaatatcaa gcggtacttc tcattcaccc gtatggatga
     4201 ataccctgtc aatggagggt tgagattctc aaatcggttt cccgggggag accgcaaatc
     4261 tccaacttta tcagcagcat tcagcatatc cagcttgcga cctaatgaag cactaatcgc
     4321 agttggaatc tttcgattgg ctttaccata tttgtaaaac tggtatagcc aatcgtctcg
     4381 aaactgaatg cggcaatcat catgttcatg atcttgctgc atttttcttt tacctcaatt
     4441 tttgccgcaa cttggcaatt ttttcgatca ccttcttacc tccgatatag tacagcaaac
     4501 atatcaaatg cacaacagca cagtgcactt gtgcaatcaa tggctatgct gtagaatgca
     4561 ctcatgcaca gtgcaggtgt gcaaaataaa tgataatttg gaggttgcat ggctcttgtt
     4621 cgctcaggaa acaaaagcaa gatttttgaa gcagatacga agtttaactc ggtttttgac
     4681 actgaatata agccgggaga aacatgtgaa tatgaaggga tttataaatg taccggttgc
     4741 ggtaaagaag taactatcgc aggcgggaaa acaat
//
