LOCUS       NZ_CP069536             3125 bp    DNA     circular CON 08-MAY-2024
DEFINITION  Rhodanobacter sp. FDAARGOS 1247 strain FDAARGOS_1247 plasmid
            unnamed, complete sequence.
ACCESSION   NZ_CP069536
VERSION     NZ_CP069536.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16357389
            Assembly: GCF_016889805.1
KEYWORDS    RefSeq.
SOURCE      Rhodanobacter sp. FDAARGOS 1247
  ORGANISM  Rhodanobacter sp. FDAARGOS 1247
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Rhodanobacteraceae; Rhodanobacter.
REFERENCE   1  (bases 1 to 3125)
  AUTHORS   Carlson,P., Fischbach,M., Hastie,J., Bilen,M., Cheng,A., Tallon,L.,
            Sadzewicz,L., Zhao,X., Boylan,J., Ott,S., Bowen,H., Vavikolanu,K.,
            Mehta,A., Aluvathingal,J., Nadendla,S., Yan,Y. and Sichtig,H.
  TITLE     FDA dAtabase for Regulatory Grade micrObial Sequences (FDA-ARGOS):
            Supporting development and validation of Infectious Disease Dx tests
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3125)
  AUTHORS   Carlson,P., Fischbach,M., Hastie,J., Bilen,M., Cheng,A., Tallon,L.,
            Sadzewicz,L., Zhao,X., Boylan,J., Ott,S., Bowen,H., Vavikolanu,K.,
            Mehta,A., Aluvathingal,J., Nadendla,S., Yan,Y. and Sichtig,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-FEB-2021) Institute for Genome Sciences, University of
            Maryland School of Medicine, BioPark II, 801 W. Baltimore St., Suite
            619, Baltimore, MD 21201, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method :: SMRT v. 8.0.0, HGAP v. 4, SPAdes v. 3.14.1
            Genome Coverage                   :: 1660.54x
            Sequencing Technology             :: Pacbio; Illumina
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_016889805.1-RS_2024_05_06
            Annotation Date                   :: 05/06/2024 11:14:25
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,541
            CDSs (total)                      :: 3,480
            Genes (coding)                    :: 3,463
            CDSs (with protein)               :: 3,463
            Genes (RNA)                       :: 61
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 50
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 7 of 17
            Pseudo Genes (incomplete)         :: 13 of 17
            Pseudo Genes (internal stop)      :: 2 of 17
            Pseudo Genes (multiple problems)  :: 5 of 17
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP069536.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3125
                     /organism="Rhodanobacter sp. FDAARGOS 1247"
                     /mol_type="genomic DNA"
                     /strain="FDAARGOS_1247"
                     /culture_collection="FDA:FDAARGOS_1247"
                     /db_xref="taxon:2778082"
                     /plasmid="unnamed"
                     /geo_loc_name="USA: MD"
                     /collected_by="FDA-Stanford Microbiome Effort"
     Typing          complement(2381..2545)
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="2.42e-81"
     Typing          complement(2..485)
                     /name="rep_cluster_1017"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
     Typing          complement(2616..3125)
                     /name="rep_cluster_1017"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="96.282"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 gaacgcataa atccaacaag attttgttta acctttttat atctactcaa cctatcaaat
       61 gctttagtta gatgcttcaa actttgttct aaagtatctc catctatcgc attttttgtt
      121 gaaagtgtta aaaacaacca acgtgctttt ggcttttcct taattacttt ttcaatcact
      181 ttttgagctt gataactatt tttcatagca cgtctccaat tacaaaccgg acataatttt
      241 gatttacaaa accatgtctt atgtaacttc aaatagcctt catcagttgg cttaaattct
      301 aaaatattac cacattgttt tacattaaaa gcctttttga tttttaaaat ttctagtata
      361 tctgcatagc ttacattatc tattttcttt tctctccatg ggcgttgttt cccacttttc
      421 gtcatatctt ttaacgtttt attatcttga ttttcggtta tacttctagt agtattatat
      481 tgcatataaa aagaccccca gtattattta agattcgaca ccttaataat ataactgggg
      541 ttttttattg tcaaattttc ctttcacgca caaaaacacg tttaaacact gtaatatcaa
      601 cagttacagc tatatatata aaatcgagtt atttctatat agtatcaaga caagaagaaa
      661 ctcgttcaca ctcgtttcaa aaaacaacct attccttctt ctttttatga ccctctaaac
      721 ctaaataaat taatgtgaaa accaatgaat aaataaaact ttctaaaaag tcaaaaggat
      781 tatcaaataa aatcgaatta acaaaattaa aaattaaaaa tacagataat aaaataatca
      841 aaaagtaaaa aaacttattc atattaaact cctttgtttt tatatgttaa tattatattg
      901 aattcattta aataacaaaa caagggggca tttacaatga atgcaattca aaacagtata
      961 tcactaagaa agattttagt agtatcttta agtattttaa ccatactttc aatggtcttg
     1021 gattttaatt tcaaagaagc tcaagcccaa aacaaaaata acattgcaga taaaaacgtt
     1081 gaaactttaa acgaaaaaga aattgaaaaa gaactaaaat acatatatgg caaaattatt
     1141 attttagata aagacggaac agctaaagat gttaatctag aaaatgccaa atctcgatat
     1201 ggatatgttc ctgaaggatt ccaaaaacta aaaaacgaca tagagaataa aaagaaaact
     1261 agttcaatat cacctagagc agttggtggg aactacaaaa atagcggtga ctgtttctat
     1321 tctgaagttt taaactcata tggagaactt ttaactggaa acataatcac agcagttttt
     1381 gaagatgtta aagccaaaaa cttaaagggc gtagcaaaaa aattagctaa aattgggata
     1441 aaaggaaacc tagctggaat cgcagctact atggtttcga aggatgtaca atgtaatctt
     1501 aaatacgggt tactttagat actatttatt ccaattgctt tattgacgtt gagcctcgga
     1561 acccttaaca atcccaaaac ttgtcgaatg gtcggcttaa tagctcacgc tatgccgaca
     1621 ttcgtctgca agtttagtta agggttcttc tcaacatcaa taaattttct cggcataaat
     1681 gcgtcgtcta ttttttatta tcttcatgat aatcatattt ttcttccatc tcgtcaaaag
     1741 catcatcttt atagaaaaac aaaaagtaag caacaacacc aataggaata aaaaaacagt
     1801 gtgaaaacaa gaagaaactc gtttcaaaat cccctcaaat attctaatta ttctttttga
     1861 aattcataac cttaacaacc aaataaatag catttattcc catcaaaata acatacggaa
     1921 ttaatatata taaattttcc aaatgagata taaaaattaa tccaagtaaa aagaaaacat
     1981 ttaaaatagt tgctataacg taaccttcat ctaacactgt gtttttattc aaaataaaca
     2041 ctcctttttt aaaaaacttt atcacaagac ttactcaaat tataaatacc tttattttga
     2101 gttttaaggg ggtattttaa aggtttaggg ggtatcatat aggtttttaa cttaaaaata
     2161 tatacaagct cttaaaacgc aaatatgagc caaataaata tatggtaatt tcacaaacaa
     2221 aaatttcagc aaaaccagtg actaattttt taacactgcc catttacatg caaattaaaa
     2281 attagcataa aatcctttaa aacttccaca tgtttttcta aattcctgca gggcgttttt
     2341 tatcaaaaat cgagaatttt taatttttct ctaaaaactc cgtaagagca taaggagaat
     2401 ttgctatcat tcaaaaatga taggtctggc aaagccagaa attccagggg ttttaaggta
     2461 ttttaaagtg atatcataca aagctgtact gtcttatttt tgtgacacaa tatattgcgt
     2521 ttgtcttatt tttgtgacac tacatacagc atttgtcaca aaaataagac agtacttttt
     2581 tataaaaaat caacaaaaaa gacattagtc aacactaatg tcttaaataa taattttgct
     2641 tttcgaaatt ccaaattgcg gtaattgaat gtgctttttc ttcttcgtct gttgttttat
     2701 cttcatcact tgcattaatc aaattaccat cttcgacatc gtctaagttt aaaattttat
     2761 gtttttgttt aagcaatcca ccataactta acatacgttt tcgatacaaa cctttttcta
     2821 aatcacttac aatttcttga tttttttcat catcatcagt taaaaaatca gatgatttaa
     2881 ccgaatattt tgaggtctct ttgattgccg attcaatgtc tttatcgcct tttctattcg
     2941 gtttgatcgc tttaacatta gcaacaggtc gatagtcaac ttgtaatgct ctttgccata
     3001 aattaaccca ttcttcttga gttatataat tctctttttt tctaaaatat gcattttcaa
     3061 cacataacaa aacatgcatg tgctgattat aactaccgtc atttttatta acggtaactt
     3121 ctgtt
//
