LOCUS       NZ_CP069222             2563 bp    DNA     circular CON 03-APR-2024
DEFINITION  Staphylococcus epidermidis strain Z0118SE0272 plasmid unnamed3,
            complete sequence.
ACCESSION   NZ_CP069222
VERSION     NZ_CP069222.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN17718513
            Assembly: GCF_016834495.1
KEYWORDS    RefSeq.
SOURCE      Staphylococcus epidermidis
  ORGANISM  Staphylococcus epidermidis
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1  (bases 1 to 2563)
  AUTHORS   Chae,J.C.
  TITLE     Complete genome of Staphylococcus epidermidis Z0118SE0272
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2563)
  AUTHORS   Chae,J.C.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-FEB-2021) Division of Biotechnology, Jeonbuk National
            University, 79 Gobong-ro, Iksan, Jeonbuk 54596, South Korea
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 22-DEC-2020
            Assembly Method                   :: Unicycler v. 0.4.9
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 627.0x
            Sequencing Technology             :: Illumina; PacBio RSII
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_016834495.1-RS_2024_04_03
            Annotation Date                   :: 04/03/2024 04:48:06
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,456
            CDSs (total)                      :: 2,372
            Genes (coding)                    :: 2,296
            CDSs (with protein)               :: 2,296
            Genes (RNA)                       :: 84
            rRNAs                             :: 7, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 61
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 76
            CDSs (without protein)            :: 76
            Pseudo Genes (ambiguous residues) :: 0 of 76
            Pseudo Genes (frameshifted)       :: 43 of 76
            Pseudo Genes (incomplete)         :: 42 of 76
            Pseudo Genes (internal stop)      :: 28 of 76
            Pseudo Genes (multiple problems)  :: 29 of 76
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP069222.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2563
                     /organism="Staphylococcus epidermidis"
                     /mol_type="genomic DNA"
                     /strain="Z0118SE0272"
                     /host="sofa"
                     /db_xref="taxon:1282"
                     /plasmid="unnamed3"
                     /geo_loc_name="South Korea: Seoul"
                     /collection_date="2018-05-23"
     gene            join(1954..2563,1..335)
                     /locus_tag="JQC90_RS12180"
     CDS             join(1954..2563,1..335)
                     /locus_tag="JQC90_RS12180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002440612.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA];
                     GO:0003916 - DNA topoisomerase activity [Evidence IEA]"
                     /GO_process="GO:0006270 - DNA replication initiation
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation factor domain-containing
                     protein"
                     /protein_id="WP_002440612.1"
                     /translation="MSRKEQEIHSKQSTLQEVTNYTSTGYSNSRLGVHSVHPQNPKLSF
                     DAMTIVGNLSRDNAQKLSSFMSIEPQIRLWDILQTKFKAKALQEKVYIEYDKVKADTWD
                     RRNMRVEFNPNKLTHEEMLWLKQNIINYMEDDGFTRIDLAFDFEDDLSNYYAMTDKAVK
                     KTVFYGRDGKPETKYFGVRDSDRFIRIYNKKQERKDNADVEVMSDHLWRVEIELKRDMV
                     DYWNDCFNDLHILKPDWTSPEKLNEQAMVYMLIHEEDKWGELNKRTKYKYKNLIKEISP
                     VDLTELMKSTLRENEKQLQKQIEFWQTKGKKLF"
                     /name="replication initiation factor domain-containing
                     protein"
     gene            1121..1309
                     /locus_tag="JQC90_RS12185"
     CDS             1121..1309
                     /locus_tag="JQC90_RS12185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002440614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CsbD family protein"
                     /protein_id="WP_002440614.1"
                     /translation="MSEEKFEQAKGNIKETIGDATDNKDLKAEGKGDKASGKAKEVVDD
                     VKDKANDLIDKVKGDKN"
                     /name="CsbD family protein"
     Typing          2..310
                     /name="rep_cluster_1118"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="94.516"
                     /coverage="97.0"
                     /evalue="2.8900000000000004e-132"
     Typing          2051..2561
                     /name="rep_cluster_1118"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="92.578"
                     /coverage="97.0"
                     /evalue="0.0"
ORIGIN
        1 aagttatgtc tgatcactta tggcgtgtag aaattgaact taaaagagat atggtggatt
       61 actggaatga ttgttttaat gatttacata tcttgaaacc agattggact tcgccagaaa
      121 aattaaatga acaagcaatg gtttacatgt taattcatga agaagacaaa tggggagaat
      181 tgaataaaag aactaaatat aaatataaaa atttaattaa agaaatatct ccagttgatt
      241 taacggaatt aatgaaatcg actttaagag aaaatgaaaa acaattacaa aagcaaatag
      301 aattttggca gacaaaaggt aagaagctat tttaaaaatg gctaccattt gactcccttt
      361 tagctcccaa atggctccat aaaaagggag ctatttttga ttttatgtag ctatttggga
      421 gctatttttg attttatgta gccatttggg agtcattttt gattttgggt agccatttgg
      481 gagtcatttt tgattttggg tagccatttg ggagtcattt ttgattttgg gtagctattc
      541 ggtagctttt gtgtagtcgt tcgggagtca tataacaatt tttatcgcat aaataggaat
      601 cccatttgac actgtcaaat caatattttg cacagaaacg gctaccgaat ggctacatac
      661 ggagacattt ctgtgtagga ttcctcttat gctcttttaa aatataaaag ttacattata
      721 cacctatttt tttcaggttt tagcttttta ttgagaagga taattaaaat aaaaaaacat
      781 atttttttct gaaagtgttg agaaataaat tttaaaatga tttatagcct ctctgttgaa
      841 caaaaaaagt ttttagtcat ttttatacgt ggaatgatta aatgtcctag aaagggctta
      901 aaatgcaaaa taaaaagact actcattttt tgagtagtct atctgtagga tagtttttga
      961 tattctaaat gaaaaggagt aatacataaa tcattttgta tacatgggat aatacaaggt
     1021 ttaatgcatg ggataaaaaa ggatatgatt tcacttttaa aaagggtatt tgaataatag
     1081 aattgtattg tagacattga ttatttagga ggaatagaaa atgagcgaag aaaaattcga
     1141 acaagcaaaa ggaaatatca aagagactat tggagatgct actgataata aggatttaaa
     1201 agcagaaggt aaaggagata aagcttctgg taaagccaaa gaagtagtag atgatgttaa
     1261 agataaagct aatgacttga ttgataaagt taaaggagat aaaaactaaa taaaaattaa
     1321 aacgtcttaa gtattattat gtagcatact tgggacgttt tttatttaaa gtgaataaaa
     1381 ataaataata agacacgcat ttatgccgag aaaatttatt gatgttgaga agaaccctta
     1441 actaaacttg gagacgaatg tcggcatagc gtgagctatt aagccgacca ttcgacaagt
     1501 tttgggattg ttaagggttc cgaggctcaa cgtcaataaa gcaattggaa taaagcaaca
     1561 aaaggagttg aagaaaatga gtgagaaaac taagaaaagc attcgtatag cattatcttt
     1621 tgcacaagta gtagtacagt catttatagt ttattatgct tacaagcaat ataaattatc
     1681 taaagaaaat taatttttga ttatgtaata agttttggta ctaaaaaaga cttgatctga
     1741 ttagaccaag ccttttgata gtgttatatt aataaacaaa taaaaagaag tcgctcaccc
     1801 accgaccaaa gtttgtgaac gacaatccaa aaagaaaaca tgagttgttt tttatgaatt
     1861 tgtatattta aatactaaac gatatttaaa tatacatcaa gataaatatt cgggtgggcg
     1921 acttcttaaa ttaaattaag gagtcgattt tttatgagta gaaaagagca agaaattcat
     1981 tcaaagcaaa gcacattaca agaagttaca aattacacct caaccggata ctctaatagc
     2041 cggttaggag tgcattctgt gcacccacaa aatcctaaat taagttttga cgctatgaca
     2101 atagttggaa atctcagtcg tgacaacgct caaaagctat cgtcatttat gagtatcgaa
     2161 ccacaaattc gactttggga tatactacaa acgaaattta aagctaaagc actgcaggaa
     2221 aaagtttata tcgaatacga caaagtaaaa gcagatacat gggatagacg taatatgcgt
     2281 gttgaattta atccgaataa acttacgcat gaagaaatgc tttggttaaa acaaaacatt
     2341 atcaactaca tggaagatga cggttttaca agaatagatt tagcttttga ttttgaagat
     2401 gatttaagta attattatgc aatgactgat aaagcagtta agaaaactgt attttatggt
     2461 cgtgacggga aaccagaaac aaaatatttt ggcgttcgtg atagtgatag atttattaga
     2521 atttataaca aaaaacaaga acgtaaagat aacgcagatg tcg
//
