LOCUS       NZ_CP069186             3043 bp    DNA     circular CON 30-MAR-2024
DEFINITION  Enterococcus faecalis strain L11 plasmid pL11-A, complete sequence.
ACCESSION   NZ_CP069186
VERSION     NZ_CP069186.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN17615183
            Assembly: GCF_016812095.1
KEYWORDS    RefSeq.
SOURCE      Enterococcus faecalis
  ORGANISM  Enterococcus faecalis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Enterococcaceae;
            Enterococcus.
REFERENCE   1  (bases 1 to 3043)
  AUTHORS   Zorzi,F.M., Almeida,L.M. and Gilmore,M.S.
  TITLE     Enterococcus faecalis L11
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3043)
  AUTHORS   Zorzi,F.M., Almeida,L.M. and Gilmore,M.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-JAN-2021) Clinical Analysis, USP, Prof. Lineu Prestes,
            580, SP, SP 05508000, Brazil
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: CLC NGS Cell v. 8.0.3
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 348.0x
            Sequencing Technology             :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_016812095.1-RS_2024_03_30
            Annotation Date                   :: 03/30/2024 05:10:37
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,731
            CDSs (total)                      :: 2,652
            Genes (coding)                    :: 2,623
            CDSs (with protein)               :: 2,623
            Genes (RNA)                       :: 79
            rRNAs                             :: 4, 4, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 4, 4 (5S, 16S, 23S)
            tRNAs                             :: 63
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 13 of 29
            Pseudo Genes (incomplete)         :: 10 of 29
            Pseudo Genes (internal stop)      :: 10 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP069186.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3043
                     /organism="Enterococcus faecalis"
                     /mol_type="genomic DNA"
                     /strain="L11"
                     /isolation_source="Rectal swab"
                     /host="Swine"
                     /db_xref="taxon:1351"
                     /plasmid="pL11-A"
                     /geo_loc_name="Brazil: Distrito Federal"
                     /collection_date="2013"
     gene            510..653
                     /locus_tag="JO410_RS13540"
                     /old_locus_tag="JO410_13540"
     CDS             510..653
                     /locus_tag="JO410_RS13540"
                     /old_locus_tag="JO410_13540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016373449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CopG family transcriptional regulator"
                     /protein_id="WP_202249593.1"
                     /translation="MAKKRLTITLSPAVLEYLENTAKEKGLSKSAVITVALEEYKKGQK
                     KA"
                     /name="CopG family transcriptional regulator"
     gene            721..1377
                     /locus_tag="JO410_RS13545"
                     /old_locus_tag="JO410_13545"
     CDS             721..1377
                     /locus_tag="JO410_RS13545"
                     /old_locus_tag="JO410_13545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011222008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication protein"
                     /protein_id="WP_202249587.1"
                     /translation="MSKDKSRYFTFLLYPESIPEDWELRLESIGVPMAISPLHDKDLSD
                     VEGQKYKKSHYHVIYVAKNPVTADSVRYKVKGLLGDKSVALVKIIVTSIENMYLYLTHE
                     SKDAIAKKKHIYKKSDIKLLNNFDIDRYIKLDVEDKDDMLNEVCDMIDEHDLANMRELR
                     RFIQNHASEYGLPSMKVINSVLRSHTGLIRLYFDAVYQERRYGRLDYDKETGEVK"
                     /name="replication protein"
     gene            1585..2097
                     /locus_tag="JO410_RS13550"
                     /old_locus_tag="JO410_13550"
     CDS             1585..2097
                     /locus_tag="JO410_RS13550"
                     /old_locus_tag="JO410_13550"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_202249589.1"
                     /translation="MKKKNQISVRKIKQVFFENNSDLKEILIKEDGKERGYGYVYSLIE
                     GHHFAIPLRSSINHKFGFMIATPANNRKGYTGLDYTKAMIVSPKDLGLAFIIPNNQFSK
                     IYRNENKIIEEFSEYVLVYKEYVLTKKLPEQYINAFTYSTLINYHDELGLNNKNDNDDE
                     NDDKKDE"
                     /name="hypothetical protein"
     gene            complement(2694..>2840)
                     /locus_tag="JO410_RS13555"
                     /old_locus_tag="JO410_13555"
                     /pseudo=""
     CDS             complement(2694..>2840)
                     /locus_tag="JO410_RS13555"
                     /old_locus_tag="JO410_13555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002358695.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="antitoxin epsilon"
                     /name="antitoxin epsilon"
ORIGIN
        1 agcgattatt tcgtttagtt gtcggcataa tcgtcaaaac agaggttctc gaaacgtaaa
       61 aggccttgag cgtagcgtgc ctttgcagtg tagaggttct ctgttagatt atgaaagccg
      121 ataactgaat gaaataatca gcggtaacgc cactctattt cggtaggaga ggctctaggg
      181 gattttaagg ggagtgaaat tccccttaag atctttttta ttgcacttgt tttttgccga
      241 gcggtagcgc tggaaaattt ttgaaaaaat ttggaatttc ggaaaatggg gggggtacta
      301 cgacccccct tttaagtgcc cagtgccaaa tttttaaaaa ataggtcttt attcttactc
      361 tctcaatggt ttagcccgct taaaatctcg gcgagttttt ggcgagtttt tggcgagttt
      421 ttggcgaaaa gaaaatattt atgcaataaa tgttgcattg tatgcacagt taagttacta
      481 tatacatata aattatagga ggttacgtaa tggctaaaaa gcgattaaca attacgcttt
      541 ctcctgccgt tttggaatat ttagaaaata cggctaagga aaagggattg tcgaagtctg
      601 cagtgattac tgtagcgtta gaagaatata agaaagggca aaaaaaagca taaaaaaaga
      661 gctatcttgg ccggacgctc tttagttaaa tatgctattt gttaaggtga ttatatcatt
      721 atgtcaaagg acaaatcaag atacttcaca tttttgctat atccagaatc aattcctgaa
      781 gattgggaat tgaggttaga atctatcggc gtgccaatgg cgattagtcc gttgcatgat
      841 aaagatttaa gtgatgttga aggacaaaaa tataaaaaat cccattatca tgttatttat
      901 gtagcaaaga atcctgttac tgctgatagt gttaggtata aagtaaaagg attacttggc
      961 gataaaagtg ttgctttagt aaaaattatt gttacaagca ttgaaaatat gtatttatat
     1021 ttaacacatg agtcaaaaga tgcaattgct aagaaaaaac atatttataa aaaatcagat
     1081 ataaagttat taaataattt tgatattgat cgctatatta agctagatgt tgaagataaa
     1141 gatgacatgt taaacgaagt ttgtgacatg atagatgaac atgatttagc gaatatgcgt
     1201 gaattaagaa gatttattca gaatcacgct tctgaatatg gattaccaag tatgaaagtt
     1261 attaattctg ttttacgttc tcatactgga ttaattagat tatattttga cgctgtttat
     1321 caagagagaa gatatggtag attagattat gataaagaaa ctggagaagt aaaatagttg
     1381 aggaaaataa aaagcctcat cctaagatga ggcttttttc attcgttaag ctatatttta
     1441 cgtggccgct ttgccacgaa atttcattcg ttaagctata ttttacgtgg ccgctttgcc
     1501 acatttattc tatatatatc ttagtataca ctaaagcgta tgtcaattta ttttgtttat
     1561 tgcatatatt tttggaggtg ctttttgaaa aagaaaaatc aaatatctgt tcggaaaatt
     1621 aaacaggtgt tttttgaaaa taattcagac cttaaagaaa ttttaataaa agaagatgga
     1681 aaagaacgag gttatggata tgtgtattct cttattgaag ggcatcattt tgctatacct
     1741 ttaagatctt ctataaatca taaatttggt tttatgattg ctacaccagc taataataga
     1801 aaaggttata caggattaga ttatacgaaa gcgatgattg ttagtccaaa ggatttgggt
     1861 ttagcgttta ttattccaaa taatcaattt agtaaaatat acagaaatga gaacaaaatt
     1921 attgaagaat tttctgaata tgttttagtg tataaggaat atgttttaac aaaaaaatta
     1981 cctgagcagt atataaacgc atttacttat tctacgctaa taaattatca tgatgaatta
     2041 ggtttaaata ataaaaatga taatgatgac gaaaatgatg acaagaaaga tgagtaaaga
     2101 aattgaagat tttgatttac gcatgagtgt agcgaattca taaatttcga tagaaattta
     2161 cacatagaaa agtgccctgc aatgcaattg cgaagggtgc ttttttcttt tatttttgct
     2221 gatttttcgt agaaaaaatg tgcacgaaac actggcttaa aaagtcgtgt gtaagtgcgc
     2281 ccttggcaaa aaaataaaag tgcacgacat caatctgaaa gatgatgtgt aagtgcgcat
     2341 tgacctaaaa attcagttgg tcaatgattc tgattaacta ttttttaact ttctttttac
     2401 atgagcacag cgaattttaa ccaacacgcc tgacgaaaaa agagtacaag ttcatgaaaa
     2461 tgatctgtac tcttttttag cacaaacaca gcaatttttt cgtaagaaaa atttggtggg
     2521 tataagtgcg cccttagtaa aaatcgctaa gggaatattt tcaaattaac tttatagaaa
     2581 cgcacccctt atttttaagg gcgcacttac acccaccaac ttatgtttgt gggtaatgtg
     2641 ctataaaact taacattcgt ttcgttttat cgtcaggcgt gttttgataa gactcacttc
     2701 gttcgtgtga tgatgtctgc atattttttt atatttctta aatactcgtg atgagctttt
     2761 aattcttcaa gagataattt aaataaatca atttgattca tatttgataa ttgctttagt
     2821 aaatttgttt gtagcctggt tccgagtttc gctttgctca actaaacatt ttattttaat
     2881 taaacagact acgctagttt aatcaaaata aaacgtgcaa ttagaattac gtcaatgctt
     2941 ctaaaaggct cttattttca ttctgacgat tttttataga tagctgtaaa aaatataagg
     3001 ctaagctttt aaagtgtctt aattcgcaaa ttatggcttt ctg
//
